Published in Science on November 15, 2013
PionX sites mark the X chromosome for dosage compensation. Nature (2016) 1.42
Hybrid Dysgenesis in Drosophila simulans Associated with a Rapid Invasion of the P-Element. PLoS Genet (2016) 1.38
Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates. Genome Biol Evol (2015) 1.11
Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements. Elife (2015) 0.91
Rapid evolutionary turnover underlies conserved lncRNA-genome interactions. Genes Dev (2016) 0.91
Regulatory activities of transposable elements: from conflicts to benefits. Nat Rev Genet (2016) 0.87
Sex Chromosome-wide Transcriptional Suppression and Compensatory Cis-Regulatory Evolution Mediate Gene Expression in the Drosophila Male Germline. PLoS Biol (2016) 0.86
Functional annotation of the Ophiostoma novo-ulmi genome: insights into the phytopathogenicity of the fungal agent of Dutch elm disease. Genome Biol Evol (2014) 0.86
DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons). Mob DNA (2014) 0.85
Mechanisms of x chromosome dosage compensation. J Genomics (2015) 0.82
Variation in the X:Autosome Distribution of Male-Biased Genes among Drosophila melanogaster Tissues and Its Relationship with Dosage Compensation. Genome Biol Evol (2015) 0.81
Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation. Genes Dev (2014) 0.81
Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation. PLoS Genet (2016) 0.81
Transposable elements and early evolution of sex chromosomes in fish. Chromosome Res (2015) 0.79
Ancestral Chromatin Configuration Constrains Chromatin Evolution on Differentiating Sex Chromosomes in Drosophila. PLoS Genet (2015) 0.78
Repetitive sequences and epigenetic modification: inseparable partners play important roles in the evolution of plant sex chromosomes. Planta (2016) 0.78
Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression. Chromosome Res (2015) 0.78
Non-coding roX RNAs prevent the binding of the MSL-complex to heterochromatic regions. PLoS Genet (2014) 0.78
De novo transcriptome assembly reveals sex-specific selection acting on evolving neo-sex chromosomes in Drosophila miranda. BMC Genomics (2014) 0.77
Dynamics of Transcription Factor Binding Site Evolution. PLoS Genet (2015) 0.77
Never settling down: frequent changes in sex chromosomes. PLoS Biol (2015) 0.77
The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function. Cold Spring Harb Perspect Biol (2014) 0.77
Transposons, environmental changes, and heritable induced phenotypic variability. Chromosoma (2014) 0.77
Evolution. Transposons up the dosage. Science (2013) 0.76
Sex-Biased Transcriptome of Schistosoma mansoni: Host-Parasite Interaction, Genetic Determinants and Epigenetic Regulators Are Associated with Sexual Differentiation. PLoS Negl Trop Dis (2016) 0.76
DPTEdb, an integrative database of transposable elements in dioecious plants. Database (Oxford) (2016) 0.76
A new player in X identification: the CLAMP protein is a key factor in Drosophila dosage compensation. Chromosome Res (2014) 0.76
Molecular Population Genetics. Genetics (2017) 0.75
Differential pre-mRNA Splicing Alters the Transcript Diversity of Helitrons Between the Maize Inbred Lines. G3 (Bethesda) (2015) 0.75
Spreading good news. Elife (2015) 0.75
Computational Identification of Novel Genes: Current and Future Perspectives. Bioinform Biol Insights (2016) 0.75
Evolutionary interaction between W/Y chromosome and transposable elements. Genetica (2016) 0.75
Sex chromosome evolution: life, death and repetitive DNA. Fly (Austin) (2015) 0.75
Helitrons in Drosophila: Chromatin modulation and tandem insertions. Mob Genet Elements (2016) 0.75
X-marks the spot: X-chromosome identification during dosage compensation. Biochim Biophys Acta (2014) 0.75
Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus. Nat Commun (2017) 0.75
Horizontal transfer of a novel Helentron in insects. Mol Genet Genomics (2016) 0.75
Selfish DNA: the ultimate parasite. Nature (1980) 9.85
Selfish genes, the phenotype paradigm and genome evolution. Nature (1980) 9.66
FIMO: scanning for occurrences of a given motif. Bioinformatics (2011) 8.89
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res (2005) 8.38
Transposable elements and the evolution of regulatory networks. Nat Rev Genet (2008) 6.11
Transposable elements have rewired the core regulatory network of human embryonic stem cells. Nat Genet (2010) 5.26
Site-specific transformation of Drosophila via phiC31 integrase-mediated cassette exchange. Genetics (2006) 3.94
Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res (2008) 3.76
Selfish DNA: a sexually-transmitted nuclear parasite. Genetics (1983) 3.31
A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome. Cell (2008) 3.10
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proc Natl Acad Sci U S A (2007) 3.00
Y chromosome of D. pseudoobscura is not homologous to the ancestral Drosophila Y. Science (2004) 2.80
Reduced adaptation of a non-recombining neo-Y chromosome. Nature (2002) 2.56
Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription. Nat Rev Genet (2012) 2.29
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. Nat Genet (2011) 2.22
Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet (2007) 1.74
Transposable elements re-wire and fine-tune the transcriptome. PLoS Genet (2013) 1.70
The dosage compensation system of Drosophila is co-opted by newly evolved X chromosomes. Nature (1996) 1.68
Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication. Nucleic Acids Res (2006) 1.62
Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania. PLoS Pathog (2007) 1.59
Sex-specific adaptation drives early sex chromosome evolution in Drosophila. Science (2012) 1.58
Degenerating Y chromosome of Drosophila miranda: a trap for retrotransposons. Proc Natl Acad Sci U S A (1992) 1.54
Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes Dev (2013) 1.13
Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis. Cell (2013) 3.05
Reversal of an ancient sex chromosome to an autosome in Drosophila. Nature (2013) 1.97
Sex-specific adaptation drives early sex chromosome evolution in Drosophila. Science (2012) 1.58
Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation. PLoS Biol (2013) 1.50
Sex-biased transcriptome evolution in Drosophila. Genome Biol Evol (2012) 1.48
Positive and negative selection on noncoding DNA in Drosophila simulans. Mol Biol Evol (2008) 1.47
Progress and prospects toward our understanding of the evolution of dosage compensation. Chromosome Res (2009) 1.40
X chromosomes and autosomes evolve at similar rates in Drosophila: no evidence for faster-X protein evolution. Genome Res (2006) 1.31
Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biol Evol (2011) 1.28
Evolution of sex chromosomes in insects. Annu Rev Genet (2010) 1.22
Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution. Proc Natl Acad Sci U S A (2013) 1.15
Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species. Genome Biol Evol (2010) 1.14
Neofunctionalization of young duplicate genes in Drosophila. Proc Natl Acad Sci U S A (2013) 1.14
Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes Dev (2013) 1.13
Gene content evolution on the X chromosome. Curr Opin Genet Dev (2008) 1.07
Nonrandom gene loss from the Drosophila miranda neo-Y chromosome. Genome Biol Evol (2011) 1.07
A survey of chromosomal and nucleotide sequence variation in Drosophila miranda. Genetics (2003) 1.04
The epigenome of evolving Drosophila neo-sex chromosomes: dosage compensation and heterochromatin formation. PLoS Biol (2013) 1.03
Characterizing the influence of effective population size on the rate of adaptation: Gillespie's Darwin domain. Genome Biol Evol (2011) 0.99
Correlated evolution of nearby residues in Drosophilid proteins. PLoS Genet (2011) 0.98
Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics (2012) 0.98
Evidence for male-driven evolution in Drosophila. Mol Biol Evol (2008) 0.97
Chromosome-wide gene silencing initiates Y degeneration in Drosophila. Curr Biol (2012) 0.90
Characterizing recurrent positive selection at fast-evolving genes in Drosophila miranda and Drosophila pseudoobscura. Genome Biol Evol (2010) 0.83