Published in Proc Natl Acad Sci U S A on October 07, 2013
Rapid divergence and diversification of mammalian duplicate gene functions. BMC Evol Biol (2015) 0.84
How evolution of genomes is reflected in exact DNA sequence match statistics. Mol Biol Evol (2014) 0.84
Genetics on the Fly: A Primer on the Drosophila Model System. Genetics (2015) 0.83
Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean. Plant Cell (2015) 0.83
Expression profile and gene age jointly shaped the genome-wide distribution of premature termination codons in a Drosophila melanogaster population. Mol Biol Evol (2014) 0.80
Chromosomal Rearrangements as Barriers to Genetic Homogenization between Archaic and Modern Humans. Mol Biol Evol (2015) 0.79
Duplication and Diversification of Dipteran Argonaute Genes, and the Evolutionary Divergence of Piwi and Aubergine. Genome Biol Evol (2016) 0.79
Faster evolving Drosophila paralogs lose expression rate and ubiquity and accumulate more non-synonymous SNPs. Biol Direct (2014) 0.79
Sequence, structural and expression divergence of duplicate genes in the bovine genome. PLoS One (2014) 0.78
Long-term asymmetrical acceleration of protein evolution after gene duplication. Genome Biol Evol (2014) 0.78
Identifying and characterising key alternative splicing events in Drosophila development. BMC Genomics (2015) 0.78
Structural divergence in vertebrate phylogeny of a duplicated prototype galectin. Genome Biol Evol (2014) 0.77
Evolutionary and Comparative Genomics to Drive Rational Drug Design, with Particular Focus on Neuropeptide Seven-Transmembrane Receptors. Biomol Ther (Seoul) (2017) 0.77
Key Role of Amino Acid Repeat Expansions in the Functional Diversification of Duplicated Transcription Factors. Mol Biol Evol (2015) 0.77
Cloning and characterization of wnt4a gene and evidence for positive selection in half-smooth tongue sole (Cynoglossus semilaevis). Sci Rep (2014) 0.77
Drosophila duplicate genes evolve new functions on the fly. Fly (Austin) (2014) 0.76
Multispecies Analysis of Expression Pattern Diversification in the Recently Expanded Insect Ly6 Gene Family. Mol Biol Evol (2015) 0.76
DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. Genome Biol (2016) 0.76
Testis-specific ATP synthase peripheral stalk subunits required for tissue-specific mitochondrial morphogenesis in Drosophila. BMC Cell Biol (2017) 0.75
Repeated Duplication of Argonaute2 Is Associated with Strong Selection and Testis Specialization in Drosophila. Genetics (2016) 0.75
Computational Identification of Novel Genes: Current and Future Perspectives. Bioinform Biol Insights (2016) 0.75
CDROM: Classification of Duplicate gene RetentiOn Mechanisms. BMC Evol Biol (2016) 0.75
A premeiotic function for boule in the planarian Schmidtea mediterranea. Proc Natl Acad Sci U S A (2016) 0.75
Evolutionary Fates and Dynamic Functionalization of Young Duplicate Genes in Arabidopsis Genomes. Plant Physiol (2016) 0.75
Diversification of spatiotemporal expression and copy number variation of the echinoid hbox12/pmar1/micro1 multigene family. PLoS One (2017) 0.75
Evidence of neofunctionalization after the duplication of the highly conserved Polycomb group gene Caf1-55 in the obscura group of Drosophila. Sci Rep (2017) 0.75
Divergent DNA Methylation Provides Insights into the Evolution of Duplicate Genes in Zebrafish. G3 (Bethesda) (2016) 0.75
RNA Decay, Evolution, and the Testis. RNA Biol (2016) 0.75
Transcriptional Interference Promotes Rapid Expression Divergence of Drosophila Nested Genes. Genome Biol Evol (2016) 0.75
Comparative genomic analysis of SET-domain family reveals the origin, expansion, and putative function of the arthropod-specific SmydA genes as histone modifiers in insects. Gigascience (2017) 0.75
A tree of life based on ninety-eight expressed genes conserved across diverse eukaryotic species. PLoS One (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol (2007) 45.68
The evolutionary fate and consequences of duplicate genes. Science (2000) 24.22
Preservation of duplicate genes by complementary, degenerative mutations. Genetics (1999) 18.29
Evolution of genes and genomes on the Drosophila phylogeny. Nature (2007) 18.01
The probability of duplicate gene preservation by subfunctionalization. Genetics (2000) 10.27
Diet and the evolution of human amylase gene copy number variation. Nat Genet (2007) 8.64
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nat Genet (2001) 7.16
Rates of DNA sequence evolution differ between taxonomic groups. Science (1986) 6.46
Evolution at two levels: on genes and form. PLoS Biol (2005) 5.84
The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet (2010) 5.75
Vertebrate genome evolution and the zebrafish gene map. Nat Genet (1998) 5.16
The probability of preservation of a newly arisen gene duplicate. Genetics (2001) 4.42
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics (2005) 3.98
Transitive functional annotation by shortest-path analysis of gene expression data. Proc Natl Acad Sci U S A (2002) 3.93
How often do duplicated genes evolve new functions? Genetics (1995) 3.80
On the rate of DNA sequence evolution in Drosophila. J Mol Evol (1989) 3.74
On the possibility of constructive neutral evolution. J Mol Evol (1999) 3.51
Rapid divergence in expression between duplicate genes inferred from microarray data. Trends Genet (2002) 3.44
Gen(om)e duplications in the evolution of early vertebrates. Curr Opin Genet Dev (1996) 3.15
Dynamic evolution of the innate immune system in Drosophila. Nat Genet (2007) 3.09
Origins, evolution, and phenotypic impact of new genes. Genome Res (2010) 2.98
The altered evolutionary trajectories of gene duplicates. Trends Genet (2004) 2.81
Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse. Genomics (1993) 2.79
Expression divergence between duplicate genes. Trends Genet (2005) 2.69
Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux. Nat Genet (2004) 2.68
Divergence in the spatial pattern of gene expression between human duplicate genes. Genome Res (2003) 2.60
Adaptive genic evolution in the Drosophila genomes. Proc Natl Acad Sci U S A (2007) 2.56
Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution. Genetics (1997) 2.55
A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications. Trends Genet (2004) 2.40
Duplicate genes increase gene expression diversity within and between species. Nat Genet (2004) 2.40
New genes in Drosophila quickly become essential. Science (2010) 2.39
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol Biol Evol (2005) 2.18
MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons. PLoS One (2011) 2.06
Asymmetric functional divergence of duplicate genes in yeast. Mol Biol Evol (2002) 2.02
Correlation between gene expression profiles and protein-protein interactions within and across genomes. Bioinformatics (2005) 1.94
Rapid evolution of expression and regulatory divergences after yeast gene duplication. Proc Natl Acad Sci U S A (2005) 1.88
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biol (2006) 1.85
Divergence in expression between duplicated genes in Arabidopsis. Mol Biol Evol (2007) 1.83
Evolution of the differential regulation of duplicate genes after polyploidization. J Mol Evol (1979) 1.69
Population-genetic models of the fates of duplicate genes. Genetica (2003) 1.67
Subfunctionalization of duplicated zebrafish pax6 genes by cis-regulatory divergence. PLoS Genet (2008) 1.59
Sex-biased transcriptome evolution in Drosophila. Genome Biol Evol (2012) 1.48
Relationships between gene expression and brain wiring in the adult rodent brain. PLoS Comput Biol (2011) 1.47
Relationships in the Drosophila obscura species group, inferred from mitochondrial cytochrome oxidase II sequences. Mol Biol Evol (1993) 1.32
Genetic redundancy. Adv Genet (1997) 1.28
A problem with the correlation coefficient as a measure of gene expression divergence. Genetics (2009) 1.13
Population genetic models of duplicated genes. Genetica (2009) 1.09
Neofunctionalization in vertebrates: the example of retinoic acid receptors. PLoS Genet (2006) 1.05
The roles of whole-genome and small-scale duplications in the functional specialization of Saccharomyces cerevisiae genes. PLoS Genet (2013) 1.05
Characterizing the influence of effective population size on the rate of adaptation: Gillespie's Darwin domain. Genome Biol Evol (2011) 0.99
Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis. Cell (2013) 3.05
Reversal of an ancient sex chromosome to an autosome in Drosophila. Nature (2013) 1.97
Dosage compensation via transposable element mediated rewiring of a regulatory network. Science (2013) 1.91
Sex-specific adaptation drives early sex chromosome evolution in Drosophila. Science (2012) 1.58
Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation. PLoS Biol (2013) 1.50
Sex-biased transcriptome evolution in Drosophila. Genome Biol Evol (2012) 1.48
Positive and negative selection on noncoding DNA in Drosophila simulans. Mol Biol Evol (2008) 1.47
Progress and prospects toward our understanding of the evolution of dosage compensation. Chromosome Res (2009) 1.40
X chromosomes and autosomes evolve at similar rates in Drosophila: no evidence for faster-X protein evolution. Genome Res (2006) 1.31
Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biol Evol (2011) 1.28
Evolution of sex chromosomes in insects. Annu Rev Genet (2010) 1.22
Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution. Proc Natl Acad Sci U S A (2013) 1.15
Effective population size and the efficacy of selection on the X chromosomes of two closely related Drosophila species. Genome Biol Evol (2010) 1.14
Conservation and de novo acquisition of dosage compensation on newly evolved sex chromosomes in Drosophila. Genes Dev (2013) 1.13
Gene content evolution on the X chromosome. Curr Opin Genet Dev (2008) 1.07
Nonrandom gene loss from the Drosophila miranda neo-Y chromosome. Genome Biol Evol (2011) 1.07
A survey of chromosomal and nucleotide sequence variation in Drosophila miranda. Genetics (2003) 1.04
The epigenome of evolving Drosophila neo-sex chromosomes: dosage compensation and heterochromatin formation. PLoS Biol (2013) 1.03
Characterizing the influence of effective population size on the rate of adaptation: Gillespie's Darwin domain. Genome Biol Evol (2011) 0.99
Correlated evolution of nearby residues in Drosophilid proteins. PLoS Genet (2011) 0.98
Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics (2012) 0.98
Evidence for male-driven evolution in Drosophila. Mol Biol Evol (2008) 0.97
Chromosome-wide gene silencing initiates Y degeneration in Drosophila. Curr Biol (2012) 0.90
Characterizing recurrent positive selection at fast-evolving genes in Drosophila miranda and Drosophila pseudoobscura. Genome Biol Evol (2010) 0.83