Published in PLoS One on November 14, 2013
An expanding universe of the non-coding genome in cancer biology. Carcinogenesis (2014) 0.89
Initial sequencing and analysis of the human genome. Nature (2001) 212.86
G*Power 3: a flexible statistical power analysis program for the social, behavioral, and biomedical sciences. Behav Res Methods (2007) 50.83
Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet (2012) 15.21
Transcriptome genetics using second generation sequencing in a Caucasian population. Nature (2010) 14.85
Detection of nonneutral substitution rates on mammalian phylogenies. Genome Res (2009) 12.58
A distinct small RNA pathway silences selfish genetic elements in the germline. Science (2006) 11.63
Alu repeats and human disease. Mol Genet Metab (1999) 6.64
Biology of mammalian L1 retrotransposons. Annu Rev Genet (2001) 6.52
Alu-containing exons are alternatively spliced. Genome Res (2002) 5.45
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes. Genome Res (2010) 5.38
Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature (2004) 5.15
Transcriptional repression by YY1 is mediated by interaction with a mammalian homolog of the yeast global regulator RPD3. Proc Natl Acad Sci U S A (1996) 4.61
Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol Cell Biol (1990) 3.58
The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model. Proc Natl Acad Sci U S A (1990) 3.56
Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences. J Mol Biol (1995) 3.50
Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell (2012) 3.48
APOBEC3 proteins inhibit human LINE-1 retrotransposition. J Biol Chem (2006) 3.30
Retroelement distributions in the human genome: variations associated with age and proximity to genes. Genome Res (2002) 3.14
A comprehensive map of mobile element insertion polymorphisms in humans. PLoS Genet (2011) 3.14
Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Mol Cell Biol (2001) 2.88
The distribution of interspersed repetitive DNA sequences in the human genome. Genomics (1989) 2.29
Analysis of transcription of the human Alu family ubiquitous repeating element by eukaryotic RNA polymerase III. Nucleic Acids Res (1981) 2.18
Active Alu retrotransposons in the human genome. Genome Res (2008) 2.09
Genomic characterization of recent human LINE-1 insertions: evidence supporting random insertion. Genome Res (2001) 1.98
The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes. Proc Natl Acad Sci U S A (1983) 1.94
Estimating the retrotransposition rate of human Alu elements. Gene (2006) 1.85
Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes. BMC Genomics (2006) 1.80
Alu transcripts: cytoplasmic localisation and regulation by DNA methylation. Nucleic Acids Res (1994) 1.70
Members of the SRY family regulate the human LINE retrotransposons. Nucleic Acids Res (2000) 1.69
Distinctive sequence organization and functional programming of an Alu repeat promoter. Proc Natl Acad Sci U S A (1984) 1.66
A YY1-binding site is required for accurate human LINE-1 transcription initiation. Nucleic Acids Res (2004) 1.59
Identification of human housekeeping genes and tissue-selective genes by microarray meta-analysis. PLoS One (2011) 1.53
Analysis of 5' junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5'-end attachment requiring microhomology-mediated end-joining. Genome Res (2005) 1.50
Alu-mediated inactivation of the human CMP- N-acetylneuraminic acid hydroxylase gene. Proc Natl Acad Sci U S A (2001) 1.49
L1 antisense promoter drives tissue-specific transcription of human genes. J Biomed Biotechnol (2006) 1.49
Similar integration but different stability of Alus and LINEs in the human genome. Gene (2001) 1.42
Nonrandom distribution of alu elements in genes of various functional categories: insight from analysis of human chromosomes 21 and 22. Mol Biol Evol (2003) 1.42
Multiple effects govern endogenous retrovirus survival patterns in human gene introns. Genome Biol (2006) 1.37
Identification of an internal cis-element essential for the human L1 transcription and a nuclear factor(s) binding to the element. Nucleic Acids Res (1992) 1.35
Intronic Alus influence alternative splicing. PLoS Genet (2008) 1.35
The impact of multiple splice sites in human L1 elements. Gene (2008) 1.26
Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms. PLoS Genet (2011) 1.18
Analysis of the role of retrotransposition in gene evolution in vertebrates. BMC Bioinformatics (2007) 1.17
Using Alu elements as polyadenylation sites: A case of retroposon exaptation. Mol Biol Evol (2008) 1.16
Nucleosome positioning by human Alu elements in chromatin. J Biol Chem (1995) 1.15
Repetitive sequence environment distinguishes housekeeping genes. Gene (2006) 1.12
Distributions of transposable elements reveal hazardous zones in mammalian introns. PLoS Comput Biol (2011) 1.12
The genomic distribution of L1 elements: the role of insertion bias and natural selection. J Biomed Biotechnol (2006) 1.08
Retrotransposons and the evolution of mammalian gene expression. Genetica (1992) 0.95
Expressing genes do not forget their LINEs: transposable elements and gene expression. Front Biosci (Landmark Ed) (2012) 0.94
Intronic L1 retrotransposons and nested genes cause transcriptional interference by inducing intron retention, exonization and cryptic polyadenylation. PLoS One (2011) 0.93
Rescuing Alu: recovery of new inserts shows LINE-1 preserves Alu activity through A-tail expansion. PLoS Genet (2012) 0.88
Novel polymorphic AluYb8 insertion in the WNK1 gene is associated with blood pressure variation in Europeans. Hum Mutat (2011) 0.87
RUNX3 downregulation in human lung adenocarcinoma is independent of p53, EGFR or KRAS status. Pathol Oncol Res (2012) 0.85
Alternative promoters and repetitive DNA elements define the species-dependent tissue-specific expression of the FMO1 genes of human and mouse. Biochem J (2007) 0.81
Effects of L1-ORF2 fragments on green fluorescent protein gene expression. Genet Mol Biol (2009) 0.78
[Evolution of Alu repeats: dynamics of distribution in genome]. Genetika (1989) 0.76
Exome sequencing of a multigenerational human pedigree. PLoS One (2009) 2.48
Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq. RNA (2010) 1.39
Whole-genome sequencing of the Akata and Mutu Epstein-Barr virus strains. J Virol (2012) 1.26
Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-Seq. J Virol (2011) 1.06