Published in Proteomics on February 18, 2014
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience. Mol Cell Proteomics (2014) 1.27
Development of data representation standards by the human proteome organization proteomics standards initiative. J Am Med Inform Assoc (2015) 0.96
jmzTab: a java interface to the mzTab data standard. Proteomics (2014) 0.92
The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard. Proteomics (2015) 0.84
Representation of selected-reaction monitoring data in the mzQuantML data standard. Proteomics (2015) 0.80
mzML--a community standard for mass spectrometry data. Mol Cell Proteomics (2010) 4.81
The mzIdentML data standard for mass spectrometry-based proteomics results. Mol Cell Proteomics (2012) 2.82
jmzML, an open-source Java API for mzML, the PSI standard for MS data. Proteomics (2010) 1.96
TraML--a standard format for exchange of selected reaction monitoring transition lists. Mol Cell Proteomics (2011) 1.65
The PSI semantic validator: a framework to check MIAPE compliance of proteomics data. Proteomics (2009) 1.62
jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data. Proteomics (2012) 1.44
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary. Database (Oxford) (2013) 1.31
The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics. Mol Cell Proteomics (2013) 1.28
A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis. OMICS (2012) 1.25
A software toolkit and interface for performing stable isotope labeling and top3 quantification using Progenesis LC-MS. OMICS (2012) 1.09
A tutorial for software development in quantitative proteomics using PSI standard formats. Biochim Biophys Acta (2013) 0.83
The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24
Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res (2010) 4.62
Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France. Proteomics (2007) 3.69
A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group. OMICS (2006) 3.51
The PSI semantic validator: a framework to check MIAPE compliance of proteomics data. Proteomics (2009) 1.62
Guidelines for reporting the use of gel electrophoresis in proteomics. Nat Biotechnol (2008) 1.54
jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data. Proteomics (2012) 1.44
The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation. Genome Biol (2008) 1.35
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary. Database (Oxford) (2013) 1.31
The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics. Mol Cell Proteomics (2013) 1.28
A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis. OMICS (2012) 1.25
FDRAnalysis: a tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines. J Proteome Res (2011) 1.14
A software toolkit and interface for performing stable isotope labeling and top3 quantification using Progenesis LC-MS. OMICS (2012) 1.09
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments. Genome Biol (2010) 1.07
A database for curating the associations between killer cell immunoglobulin-like receptors and diseases in worldwide populations. Database (Oxford) (2013) 1.05
How to submit MS proteomics data to ProteomeXchange via the PRIDE database. Proteomics (2014) 0.99
Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML. Mol Cell Proteomics (2013) 0.97
Capture and analysis of quantitative proteomic data. Proteomics (2007) 0.96
Semi-automatic tool to describe, store and compare proteomics experiments based on MIAPE compliant reports. Proteomics (2010) 0.95
Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites. Nucleic Acids Res (2012) 0.94
A toolkit for capturing and sharing FuGE experiments. Bioinformatics (2008) 0.92
jmzTab: a java interface to the mzTab data standard. Proteomics (2014) 0.92
The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative. Proteomics (2010) 0.91
Guidelines for reporting quantitative mass spectrometry based experiments in proteomics. J Proteomics (2013) 0.90
Ten years of standardizing proteomic data: a report on the HUPO-PSI Spring Workshop: April 12-14th, 2012, San Diego, USA. Proteomics (2012) 0.89
Guidelines for reporting the use of gel image informatics in proteomics. Nat Biotechnol (2010) 0.86
Annual spring meeting of the Proteomics Standards Initiative 23-25 April 2008, Toledo, Spain. Proteomics (2008) 0.86
The HUPO pre-congress Proteomics Standards Initiative workshop. HUPO 5th annual World Congress. Long Beach, CA, USA 28 October-1 November 2006. Proteomics (2007) 0.86
Guidelines for reporting the use of column chromatography in proteomics. Nat Biotechnol (2010) 0.86
ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards. Proteomics (2014) 0.85
A DIGE study on the effects of salbutamol on the rat muscle proteome - an exemplar of best practice for data sharing in proteomics. BMC Res Notes (2011) 0.85
A standardized framing for reporting protein identifications in mzIdentML 1.2. Proteomics (2014) 0.85
Listen to genes: dealing with microarray data in the frequency domain. PLoS One (2009) 0.84
A tutorial for software development in quantitative proteomics using PSI standard formats. Biochim Biophys Acta (2013) 0.83
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. Biochim Biophys Acta (2013) 0.83
The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards. Mol Cell Proteomics (2011) 0.83
Preparing to work with big data in proteomics - a report on the HUPO-PSI Spring Workshop: April 15-17, 2013, Liverpool, UK. Proteomics (2013) 0.82
In silico analysis of HLA associations with drug-induced liver injury: use of a HLA-genotyped DNA archive from healthy volunteers. Genome Med (2012) 0.81
Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany. Proteomics (2014) 0.80
Annual spring meeting of the Proteomics Standards Initiative. Proteomics (2009) 0.80
FuGEFlow: data model and markup language for flow cytometry. BMC Bioinformatics (2009) 0.77
Entering the implementation era: a report on the HUPO-PSI Fall workshop 25-27 September 2006, Washington DC, USA. Proteomics (2007) 0.77
Computational phosphoproteomics: from identification to localization. Proteomics (2015) 0.76
Bioinformatics challenges and solutions in proteomics as quantitative methods mature. OMICS (2012) 0.75
A guide for integration of proteomic data standards into laboratory workflows. Proteomics (2013) 0.75
Software for analysing ion mobility mass spectrometry data to improve peptide identification. Proteomics (2012) 0.75
nmrML: a community supported open data standard for the description, storage, and exchange of NMR data. Anal Chem (2017) 0.75