Published in Appl Microbiol Biotechnol on February 20, 2014
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Regional synchrony in full-scale activated sludge bioreactors due to deterministic microbial community assembly. ISME J (2016) 0.75
Microbiological Analysis of Necrosols Collected from Urban Cemeteries in Poland. Biomed Res Int (2015) 0.75
Bacterial community structure transformed after thermophilically composting human waste in Haiti. PLoS One (2017) 0.75
Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell (2009) 20.29
PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics (2009) 15.93
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J (2011) 13.64
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res (2008) 9.09
Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science (2010) 6.73
Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science (2011) 5.89
High-density microarray of small-subunit ribosomal DNA probes. Appl Environ Microbiol (2002) 4.95
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol (2007) 4.81
Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci U S A (2006) 4.62
Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma. J Allergy Clin Immunol (2010) 4.38
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol (2006) 4.09
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One (2011) 4.04
Development of a high-volume aerosol collection system for the identification of air-borne micro-organisms. Lett Appl Microbiol (2002) 4.02
Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray. FEMS Microbiol Lett (2005) 3.42
Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One (2010) 3.38
Oil biodegradation and bioremediation: a tale of the two worst spills in U.S. history. Environ Sci Technol (2011) 2.88
Chronic kidney disease alters intestinal microbial flora. Kidney Int (2012) 2.58
Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa. Environ Microbiol (2010) 2.55
Comparative analyses of the bacterial microbiota of the human nostril and oropharynx. MBio (2010) 2.53
Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spill. Appl Environ Microbiol (2011) 2.47
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. ISME J (2012) 2.45
Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. ISME J (2009) 2.44
Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity. Biotechniques (2003) 2.43
A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. OMICS (2010) 2.42
Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol (2010) 2.41
Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary. Environ Microbiol (2008) 2.37
Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California. ISME J (2008) 2.36
Environmental whole-genome amplification to access microbial populations in contaminated sediments. Appl Environ Microbiol (2006) 2.24
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J (2010) 2.21
Combined niche and neutral effects in a microbial wastewater treatment community. Proc Natl Acad Sci U S A (2010) 2.20
Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile. Appl Environ Microbiol (2008) 2.11
Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume. ISME J (2011) 2.10
Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen. J Bacteriol (2006) 2.08
Man's best friend? The effect of pet ownership on house dust microbial communities. J Allergy Clin Immunol (2010) 2.06
Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current. Environ Microbiol (2010) 2.05
Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. PLoS One (2010) 2.02
Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Appl Environ Microbiol (2003) 2.01
Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. Environ Microbiol (2008) 2.00
Environmental genomics reveals a single-species ecosystem deep within Earth. Science (2008) 1.98
Long-term sustainability of a high-energy, low-diversity crustal biome. Science (2006) 1.97
Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups. Proc Natl Acad Sci U S A (2012) 1.88
Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari, Mexico. Appl Environ Microbiol (2006) 1.87
Selective progressive response of soil microbial community to wild oat roots. ISME J (2008) 1.87
Environmental microarray analyses of Antarctic soil microbial communities. ISME J (2008) 1.84
Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors. Appl Environ Microbiol (2006) 1.83
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME J (2010) 1.71
Quantitative determination of perfluorochemicals in sediments and domestic sludge. Environ Sci Technol (2005) 1.69
Salt stress in Desulfovibrio vulgaris Hildenborough: an integrated genomics approach. J Bacteriol (2006) 1.68
Genome plasticity in Yersinia pestis. Microbiology (2002) 1.66
Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance. Front Microbiol (2011) 1.65
Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol (2012) 1.58
Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J (2009) 1.58
Structure of the human gastric bacterial community in relation to Helicobacter pylori status. ISME J (2010) 1.58
Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: betaproteobacterial dynamics and low relative abundance of Crenarchaea. Environ Microbiol (2009) 1.55
Whole-genome transcriptional analysis of heavy metal stresses in Caulobacter crescentus. J Bacteriol (2005) 1.49
A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells. ISME J (2008) 1.48
Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Appl Environ Microbiol (2009) 1.41
Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris hildenborough using gas chromatography-mass spectrometry and Fourier transform-ion cyclotron resonance mass spectrometry. J Bacteriol (2006) 1.40
Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico. Environ Sci Technol (2013) 1.38
Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome. PLoS One (2010) 1.38
Pilot-scale in situ bioremedation of uranium in a highly contaminated aquifer. 2. Reduction of u(VI) and geochemical control of u(VI) bioavailability. Environ Sci Technol (2006) 1.38
The electron transfer system of syntrophically grown Desulfovibrio vulgaris. J Bacteriol (2009) 1.35
Pyrosequencing analysis of bacterial biofilm communities in water meters of a drinking water distribution system. Appl Environ Microbiol (2010) 1.35
Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis. Appl Environ Microbiol (2006) 1.35
Metagenomic analysis and metabolite profiling of deep-sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill. Front Microbiol (2013) 1.34
Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer. Appl Environ Microbiol (2006) 1.33
Global transcriptional profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction. Appl Environ Microbiol (2005) 1.33
Animal-to-animal variation in fecal microbial diversity among beef cattle. Appl Environ Microbiol (2010) 1.33
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinformatics (2007) 1.33