Published in Nucleic Acids Res on February 21, 2014
Regulation of bacterial virulence by Csr (Rsm) systems. Microbiol Mol Biol Rev (2015) 1.26
Specificity and nonspecificity in RNA-protein interactions. Nat Rev Mol Cell Biol (2015) 1.08
Structural basis of the non-coding RNA RsmZ acting as a protein sponge. Nature (2014) 1.04
Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo. EMBO J (2016) 0.98
Different combinations of atomic interactions predict protein-small molecule and protein-DNA/RNA affinities with similar accuracy. Proteins (2015) 0.88
The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in Campylobacter jejuni. Nat Commun (2016) 0.80
(S)Pinning down protein interactions by NMR. Protein Sci (2016) 0.77
csrT Represents a New Class of csrA-Like Regulatory Genes Associated with Integrative Conjugative Elements of Legionella pneumophila. J Bacteriol (2015) 0.77
Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins. Nucleic Acids Res (2016) 0.76
Abundant Intergenic TAACTGA Direct Repeats and Putative Alternate RNA Polymerase β' Subunits in Marine Beggiatoaceae Genomes: Possible Regulatory Roles and Origins. Front Microbiol (2015) 0.76
Structural basis for the CsrA-dependent modulation of translation initiation by an ancient regulatory protein. Proc Natl Acad Sci U S A (2016) 0.75
Improving the accuracy of high-throughput protein-protein affinity prediction may require better training data. BMC Bioinformatics (2017) 0.75
Small Non-Coding RNAs: New Insights in Modulation of Host Immune Response by Intracellular Bacterial Pathogens. Front Immunol (2016) 0.75
Primary and Secondary Sequence Structure Requirements for Recognition and Discrimination of Target RNAs by Pseudomonas aeruginosa RsmA and RsmF. J Bacteriol (2016) 0.75
Integrative FourD omics approach profiles the target network of the carbon storage regulatory system. Nucleic Acids Res (2017) 0.75
Few basepairing-independent motifs in the apical half of the avian HBV ε RNA stem-loop determine site-specific initiation of protein-priming. Sci Rep (2017) 0.75
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A (2000) 96.90
The Amber biomolecular simulation programs. J Comput Chem (2005) 28.84
TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J Biomol NMR (2009) 16.09
Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation. Biochemistry (1994) 13.94
Regulatory RNAs in bacteria. Cell (2009) 9.57
Automated NMR structure calculation with CYANA. Methods Mol Biol (2004) 9.31
Generalized born models of macromolecular solvation effects. Annu Rev Phys Chem (2000) 6.55
Regulation of bacterial gene expression by riboswitches. Annu Rev Microbiol (2005) 5.66
Hfq and its constellation of RNA. Nat Rev Microbiol (2011) 4.94
Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell (2011) 4.68
Conformational entropy in molecular recognition by proteins. Nature (2007) 3.98
Molecular basis of RNA recognition by the human alternative splicing factor Fox-1. EMBO J (2005) 3.91
Mechanism of RNA silencing by Hfq-binding small RNAs. Curr Opin Microbiol (2007) 3.55
Spatial organization of the flow of genetic information in bacteria. Nature (2010) 3.43
Positive regulation of motility and flhDC expression by the RNA-binding protein CsrA of Escherichia coli. Mol Microbiol (2001) 3.05
Metal ions and RNA folding: a highly charged topic with a dynamic future. Curr Opin Chem Biol (2005) 3.00
Gac/Rsm signal transduction pathway of gamma-proteobacteria: from RNA recognition to regulation of social behaviour. Mol Microbiol (2007) 2.94
Regulatory RNA as mediator in GacA/RsmA-dependent global control of exoproduct formation in Pseudomonas fluorescens CHA0. J Bacteriol (2002) 2.86
CsrB sRNA family: sequestration of RNA-binding regulatory proteins. Curr Opin Microbiol (2007) 2.83
Regulatory RNA in bacterial pathogens. Cell Host Microbe (2010) 2.41
Molecular basis for interaction of let-7 microRNAs with Lin28. Cell (2011) 2.28
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA. Mol Microbiol (2009) 2.19
RNA thermometers. FEMS Microbiol Rev (2006) 2.16
Protein dynamics measurements by TROSY-based NMR experiments. J Magn Reson (2000) 2.12
RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction. RNA (2005) 2.11
Regulatory interactions of Csr components: the RNA binding protein CsrA activates csrB transcription in Escherichia coli. J Bacteriol (2001) 1.87
RNA folding during transcription. Annu Rev Biophys Biomol Struct (2006) 1.81
Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems. Environ Microbiol (2012) 1.76
Structural basis for the coevolution of a viral RNA-protein complex. Nat Struct Mol Biol (2007) 1.71
Three small RNAs jointly ensure secondary metabolism and biocontrol in Pseudomonas fluorescens CHA0. Proc Natl Acad Sci U S A (2005) 1.69
RNAs: regulators of bacterial virulence. Nat Rev Microbiol (2010) 1.63
Post-transcriptional global regulation by CsrA in bacteria. Cell Mol Life Sci (2010) 1.53
Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA. Nat Struct Mol Biol (2007) 1.48
Nonspecific recognition is achieved in Pot1pC through the use of multiple binding modes. Structure (2012) 1.47
Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein. Proc Natl Acad Sci U S A (2009) 1.40
Molecular geometry of CsrA (RsmA) binding to RNA and its implications for regulated expression. J Mol Biol (2009) 1.33
A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens. J Biol Chem (2004) 1.32
CsrA activates flhDC expression by protecting flhDC mRNA from RNase E-mediated cleavage. Mol Microbiol (2013) 1.29
A syn-anti conformational difference allows SRSF2 to recognize guanines and cytosines equally well. EMBO J (2011) 1.18
Hidden specificity in an apparently nonspecific RNA-binding protein. Nature (2013) 1.13
Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy. Prog Nucl Magn Reson Spectrosc (2010) 1.11
Mechanism of hcnA mRNA recognition in the Gac/Rsm signal transduction pathway of Pseudomonas fluorescens. Mol Microbiol (2007) 1.11
NMR chemical exchange as a probe for ligand-binding kinetics in a theophylline-binding RNA aptamer. J Am Chem Soc (2009) 1.01
Distinct and overlapping binding sites of Pseudomonas aeruginosa Hfq and RsmA proteins on the non-coding RNA RsmY. Biochem Biophys Res Commun (2006) 1.00
An unusual CsrA family member operates in series with RsmA to amplify posttranscriptional responses in Pseudomonas aeruginosa. Proc Natl Acad Sci U S A (2013) 0.97
Isotope labeling and segmental labeling of larger RNAs for NMR structural studies. Adv Exp Med Biol (2012) 0.94
A fast, efficient and sequence-independent method for flexible multiple segmental isotope labeling of RNA using ribozyme and RNase H cleavage. Nucleic Acids Res (2010) 0.94
Iron regulation of the hcnABC genes encoding hydrogen cyanide synthase depends on the anaerobic regulator ANR rather than on the global activator GacA in Pseudomonas fluorescens CHA0. Microbiology (2000) 0.92
Structural rearrangement in an RsmA/CsrA ortholog of Pseudomonas aeruginosa creates a dimeric RNA-binding protein, RsmN. Structure (2013) 0.91
A procedure to validate and correct the 13C chemical shift calibration of RNA datasets. J Biomol NMR (2012) 0.91
RNA pentaloop structures as effective targets of regulators belonging to the RsmA/CsrA protein family. RNA Biol (2013) 0.89
Automated and assisted RNA resonance assignment using NMR chemical shift statistics. Nucleic Acids Res (2013) 0.87
Kill the messenger: bacterial antisense RNA promotes mRNA decay. Nat Struct Mol Biol (2009) 0.85
Alternative conformations at the RNA-binding surface of the N-terminal U2AF(65) RNA recognition motif. J Mol Biol (2006) 0.83
Recent developments in (15)N NMR relaxation studies that probe protein backbone dynamics. Top Curr Chem (2012) 0.83
A NMR guided approach for CsrA-RNA crystallization. J Biomol NMR (2013) 0.82
High-yield Escherichia coli-based cell-free expression of human proteins. J Biomol NMR (2012) 0.80
Crystal structure of the bacteriophage Qβ coat protein in complex with the RNA operator of the replicase gene. J Mol Biol (2013) 0.79
The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. FEBS J (2005) 6.72
Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science (2005) 5.14
Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy. Nature (2002) 4.29
Molecular basis of RNA recognition by the human alternative splicing factor Fox-1. EMBO J (2005) 3.91
RNA recognition motifs: boring? Not quite. Curr Opin Struct Biol (2008) 3.78
Gac/Rsm signal transduction pathway of gamma-proteobacteria: from RNA recognition to regulation of social behaviour. Mol Microbiol (2007) 2.94
Sequence-specific binding of single-stranded RNA: is there a code for recognition? Nucleic Acids Res (2006) 2.89
Molecular basis for temperature sensing by an RNA thermometer. EMBO J (2006) 1.82
Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J (2006) 1.78
The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific readout of the minor groove. Cell (2010) 1.77
Shape-specific recognition in the structure of the Vts1p SAM domain with RNA. Nat Struct Mol Biol (2006) 1.61
A distinct structural region of the prokaryotic ubiquitin-like protein (Pup) is recognized by the N-terminal domain of the proteasomal ATPase Mpa. FEBS Lett (2009) 1.55
Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA. Nat Struct Mol Biol (2007) 1.48
RNA sequence- and shape-dependent recognition by proteins in the ribonucleoprotein particle. EMBO Rep (2005) 1.48
The YTH domain is a novel RNA binding domain. J Biol Chem (2010) 1.45
Improved T and B cell recovery by the transfer of slowly dividing human hematopoietic stem cells. Leuk Res (2009) 1.39
RRM-RNA recognition: NMR or crystallography…and new findings. Curr Opin Struct Biol (2012) 1.38
Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate. J Am Chem Soc (2010) 1.36
NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition. Nucleic Acids Res (2006) 1.34
Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs. Structure (2006) 1.31
Conformation of polypyrimidine tract binding protein in solution. Structure (2006) 1.30
RNA looping by PTB: Evidence using FRET and NMR spectroscopy for a role in splicing repression. Proc Natl Acad Sci U S A (2010) 1.29
RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence. Cell Mol Life Sci (2012) 1.28
Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28. Nat Struct Mol Biol (2011) 1.26
The phosphoglucan phosphatase like sex Four2 dephosphorylates starch at the C3-position in Arabidopsis. Plant Cell (2011) 1.26
The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction. EMBO Rep (2007) 1.25
Molecular basis of UG-rich RNA recognition by the human splicing factor TDP-43. Nat Struct Mol Biol (2013) 1.25
Molecular basis of purine-rich RNA recognition by the human SR-like protein Tra2-β1. Nat Struct Mol Biol (2011) 1.22
Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs. Nat Struct Mol Biol (2010) 1.20
U1 snRNA directly interacts with polypyrimidine tract-binding protein during splicing repression. Mol Cell (2011) 1.18
Structure of the two most C-terminal RNA recognition motifs of PTB using segmental isotope labeling. EMBO J (2005) 1.18
A syn-anti conformational difference allows SRSF2 to recognize guanines and cytosines equally well. EMBO J (2011) 1.18
Adhesion of hematopoietic progenitor cells to human mesenchymal stem cells as a model for cell-cell interaction. Exp Hematol (2007) 1.17
Solving the structure of PTB in complex with pyrimidine tracts: an NMR study of protein-RNA complexes of weak affinities. J Mol Biol (2006) 1.14
IL-22 is produced by innate lymphoid cells and limits inflammation in allergic airway disease. PLoS One (2011) 1.13
Structure determination and dynamics of protein-RNA complexes by NMR spectroscopy. Prog Nucl Magn Reson Spectrosc (2010) 1.11
The Notch signaling pathway is related to neurovascular progression of pancreatic cancer. Ann Surg (2005) 1.11
ADAR proteins: double-stranded RNA and Z-DNA binding domains. Curr Top Microbiol Immunol (2012) 1.09
Aldehyde dehydrogenase activity among primary leukemia cells is associated with stem cell features and correlates with adverse clinical outcomes. Exp Hematol (2009) 1.08
Plasticity of the β-trefoil protein fold in the recognition and control of invertebrate predators and parasites by a fungal defence system. PLoS Pathog (2012) 1.05
An extended dsRBD with a novel zinc-binding motif mediates nuclear retention of fission yeast Dicer. EMBO J (2011) 1.03
NMR structure of the apoB mRNA stem-loop and its interaction with the C to U editing APOBEC1 complementary factor. RNA (2005) 1.03
A combination of granulocyte-colony-stimulating factor (G-CSF) and plerixafor mobilizes more primitive peripheral blood progenitor cells than G-CSF alone: results of a European phase II study. Cytotherapy (2009) 0.99
Structural basis for sigma factor mimicry in the general stress response of Alphaproteobacteria. Proc Natl Acad Sci U S A (2012) 0.98
Isolated pseudo-RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition. Proc Natl Acad Sci U S A (2013) 0.98
Minimally invasive computer-navigated total hip arthroplasty, following the concept of femur first and combined anteversion: design of a blinded randomized controlled trial. BMC Musculoskelet Disord (2011) 0.97
Solution structure of the two RNA recognition motifs of hnRNP A1 using segmental isotope labeling: how the relative orientation between RRMs influences the nucleic acid binding topology. J Biomol NMR (2012) 0.97
Recent advances in segmental isotope labeling of proteins: NMR applications to large proteins and glycoproteins. J Biomol NMR (2009) 0.95
A fast, efficient and sequence-independent method for flexible multiple segmental isotope labeling of RNA using ribozyme and RNase H cleavage. Nucleic Acids Res (2010) 0.94
Isotope labeling and segmental labeling of larger RNAs for NMR structural studies. Adv Exp Med Biol (2012) 0.94
A novel RNA pentaloop fold involved in targeting ADAR2. RNA (2005) 0.93
Structures of Pup ligase PafA and depupylase Dop from the prokaryotic ubiquitin-like modification pathway. Nat Commun (2012) 0.93
Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif. J Am Chem Soc (2014) 0.92
Cytoplasmic N-glycosyltransferase of Actinobacillus pleuropneumoniae is an inverting enzyme and recognizes the NX(S/T) consensus sequence. J Biol Chem (2011) 0.92
Stabilization of branched oligosaccharides: Lewis(x) benefits from a nonconventional C-H···O hydrogen bond. J Am Chem Soc (2013) 0.92
NMR structure determination of a segmentally labeled glycoprotein using in vitro glycosylation. J Am Chem Soc (2009) 0.91
Solution structure and activation mechanism of ubiquitin-like small archaeal modifier proteins. J Mol Biol (2010) 0.91
A procedure to validate and correct the 13C chemical shift calibration of RNA datasets. J Biomol NMR (2012) 0.91
High-resolution structural analysis shows how Tah1 tethers Hsp90 to the R2TP complex. Structure (2013) 0.90
Unambiguous determination of the ionization state of a glycoside hydrolase active site lysine by 1H-15N heteronuclear correlation spectroscopy. J Am Chem Soc (2006) 0.90
A strong 13C chemical shift signature provides the coordination mode of histidines in zinc-binding proteins. J Biomol NMR (2012) 0.89
Unexpected reactivity and mechanism of carboxamide activation in bacterial N-linked protein glycosylation. Nat Commun (2013) 0.89
Improved segmental isotope labeling methods for the NMR study of multidomain or large proteins: application to the RRMs of Npl3p and hnRNP L. J Mol Biol (2007) 0.89
Short, synthetic and selectively 13C-labeled RNA sequences for the NMR structure determination of protein-RNA complexes. Nucleic Acids Res (2006) 0.88
How a rotavirus hijacks the human protein synthesis machinery. Nat Struct Biol (2002) 0.87
Novel enzymatic activity derived from the Semliki Forest virus capsid protein. J Mol Biol (2007) 0.87
Automated and assisted RNA resonance assignment using NMR chemical shift statistics. Nucleic Acids Res (2013) 0.87
Pheromone discrimination by a pH-tuned polymorphism of the Bombyx mori pheromone-binding protein. Proc Natl Acad Sci U S A (2013) 0.87
Shear stress regulates adhesion and rolling of CD44+ leukemic and hematopoietic progenitor cells on hyaluronan. Biophys J (2011) 0.85
The high kinetic stability of a G-quadruplex limits hnRNP F qRRM3 binding to G-tract RNA. Nucleic Acids Res (2012) 0.85
Heterogeneity of leukemia stem cell candidates at diagnosis of acute myeloid leukemia and their clinical significance. Exp Hematol (2011) 0.85
Increase in backbone mobility of the VTS1p-SAM domain on binding to SRE-RNA. J Mol Biol (2009) 0.84
A bimodular nuclear localization signal assembled via an extended double-stranded RNA-binding domain acts as an RNA-sensing signal for transportin 1. Proc Natl Acad Sci U S A (2014) 0.83
A catalytically essential motif in external loop 5 of the bacterial oligosaccharyltransferase PglB. J Biol Chem (2013) 0.81
Changes in dynamics of SRE-RNA on binding to the VTS1p-SAM domain studied by 13C NMR relaxation. J Am Chem Soc (2008) 0.80
RNA-directed epigenomic reprogramming: an emerging principle of a more targeted cancer therapy? Genes Chromosomes Cancer (2011) 0.78
Anatomical relationships of human pelvises and their application to registration techniques. Comput Aided Surg (2012) 0.78
NMR spectroscopic characterization of a beta-(1,4)-glycosidase along its reaction pathway: stabilization upon formation of the glycosyl-enzyme intermediate. Biochemistry (2007) 0.78
Resonance assignments of the two N-terminal RNA recognition motifs (RRM) of the human heterogeneous nuclear ribonucleoprotein F (HnRNP F). J Biomol NMR (2005) 0.77
Solution structure of the N-terminal dsRBD of Drosophila ADAR and interaction studies with RNA. Biochimie (2011) 0.77
Amino acid-selective segmental isotope labeling of multidomain proteins for structural biology. Chembiochem (2013) 0.76
NMR spectroscopy: an excellent tool to understand RNA and carbohydrate recognition by proteins. Chimia (Aarau) (2012) 0.76
Assignments for the Bombyx mori pheromone-binding protein fragment BmPBP(1-128) at pH 6.5. J Biomol NMR (2005) 0.75
Noncontact three-dimensional laser measuring device for tracheoscopy. Ann Otol Rhinol Laryngol (2002) 0.75
Single-stranded nucleic acid recognition: is there a code after all? Structure (2013) 0.75
Complete NMR assignment of succinimide, its detection and quantification in peptides and intact proteins. Anal Chem (2017) 0.75