PubRank

David W Ussery

Author PubWeight™ 174.02‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 2007 85.81
2 Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol 2012 8.15
3 The Genomic Standards Consortium. PLoS Biol 2011 3.99
4 Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol 2010 2.96
5 Origin of replication in circular prokaryotic chromosomes. Environ Microbiol 2006 2.55
6 The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A 2012 2.39
7 Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics 2006 1.86
8 The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology. Mol Biosyst 2008 1.79
9 The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri. PLoS One 2007 1.78
10 The Salmonella enterica pan-genome. Microb Ecol 2011 1.76
11 Analysis of intra-genomic GC content homogeneity within prokaryotes. BMC Genomics 2010 1.71
12 LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium. Mol Microbiol 2012 1.70
13 Genome Update: proteome comparisons. Microbiology 2005 1.66
14 Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray. Genome Biol 2007 1.63
15 CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data. Bioinformatics 2004 1.62
16 Genomic taxonomy of Vibrios. BMC Evol Biol 2009 1.62
17 Benchmarking of methods for genomic taxonomy. J Clin Microbiol 2014 1.51
18 Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes. BMC Genomics 2008 1.46
19 Microbial comparative pan-genomics using binomial mixture models. BMC Genomics 2009 1.46
20 Global regulation of virulence and the stress response by CsrA in the highly adapted human gastric pathogen Helicobacter pylori. Mol Microbiol 2004 1.45
21 Standard operating procedure for computing pangenome trees. Stand Genomic Sci 2010 1.45
22 Genomic characterization of Campylobacter jejuni strain M1. PLoS One 2010 1.44
23 Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes. BMC Genomics 2012 1.43
24 Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus. BMC Microbiol 2008 1.40
25 The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571. BMC Genomics 2008 1.32
26 An environmental signature for 323 microbial genomes based on codon adaptation indices. Genome Biol 2006 1.28
27 A closer look at bacteroides: phylogenetic relationship and genomic implications of a life in the human gut. Microb Ecol 2011 1.27
28 Insights from 20 years of bacterial genome sequencing. Funct Integr Genomics 2015 1.27
29 RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box. J Mol Biol 2003 1.25
30 Genomic variation in Salmonella enterica core genes for epidemiological typing. BMC Genomics 2012 1.23
31 Investigations of oligonucleotide usage variance within and between prokaryotes. PLoS Comput Biol 2008 1.18
32 The sigma54 regulon (sigmulon) of Pseudomonas putida. Environ Microbiol 2003 1.14
33 On the origins of a Vibrio species. Microb Ecol 2010 1.13
34 GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes. Stand Genomic Sci 2009 1.10
35 Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome. FEMS Microbiol Lett 2007 1.09
36 Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera. Microb Ecol 2011 1.07
37 Design of a seven-genome Escherichia coli microarray for comparative genomic profiling. J Bacteriol 2006 1.07
38 Chromatin architecture and gene expression in Escherichia coli. Genome Biol 2004 1.05
39 The TNFalpha receptor TNFRSF1A and genes encoding the amiloride-sensitive sodium channel ENaC as modulators in cystic fibrosis. Hum Genet 2006 1.05
40 From essential to persistent genes: a functional approach to constructing synthetic life. Trends Genet 2012 1.04
41 Genome update: distribution of two-component transduction systems in 250 bacterial genomes. Microbiology 2005 1.02
42 Non-O1 Vibrio cholerae unlinked to cholera in Haiti. Proc Natl Acad Sci U S A 2012 0.96
43 Defining the Pseudomonas genus: where do we draw the line with Azotobacter? Microb Ecol 2011 0.96
44 Strand misalignments lead to quasipalindrome correction. Trends Genet 2003 0.92
45 Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae. BMC Genomics 2007 0.92
46 Extracytoplasmic function sigma factors in Pseudomonas syringae. Trends Microbiol 2005 0.91
47 Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering. BMC Genomics 2009 0.91
48 The plasmid genome database. Microbiology 2003 0.91
49 Microbial taxonomy in the post-genomic era: rebuilding from scratch? Arch Microbiol 2014 0.90
50 Functionality of system components: conservation of protein function in protein feature space. Genome Res 2003 0.89
51 Inheritance and organisation of the mitochondrial genome differ between two Saccharomyces yeasts. J Mol Biol 2002 0.88
52 Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972. Mol Genet Genomics 2008 0.88
53 Genome update: sigma factors in 240 bacterial genomes. Microbiology 2005 0.87
54 Genome update: prediction of secreted proteins in 225 bacterial proteomes. Microbiology 2005 0.87
55 Campylobacter fetus subspecies: comparative genomics and prediction of potential virulence targets. Gene 2012 0.86
56 Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes. PLoS One 2013 0.86
57 Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli. Microb Inform Exp 2012 0.85
58 Stretches of alternating pyrimidine/purines and purines are respectively linked with pathogenicity and growth temperature in prokaryotes. BMC Genomics 2009 0.84
59 Comparative genomics of green sulfur bacteria. Photosynth Res 2010 0.83
60 Prediction of highly expressed genes in microbes based on chromatin accessibility. BMC Mol Biol 2007 0.83
61 Studies on monitoring and tracking genetic resources: an executive summary. Stand Genomic Sci 2009 0.83
62 Bayesian prediction of bacterial growth temperature range based on genome sequences. BMC Genomics 2012 0.82
63 Sigma factors in a thousand E. coli genomes. Environ Microbiol 2013 0.82
64 Global features of the Alcanivorax borkumensis SK2 genome. Environ Microbiol 2007 0.81
65 Genome update: chromosome atlases. Microbiology 2004 0.81
66 Genome Update: Protein secretion systems in 225 bacterial genomes. Microbiology 2005 0.78
67 Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis. Vet Microbiol 2010 0.78
68 Genome update: purine strand bias in 280 bacterial genomes. Microbiology 2006 0.78
69 Genome update: 2D clustering of bacterial genomes. Microbiology 2005 0.77
70 Genome update: prediction of membrane proteins in prokaryotic genomes. Microbiology 2005 0.77
71 Genomic analysis of two-component signal transduction proteins in basidiomycetes. J Mol Microbiol Biotechnol 2010 0.76
72 Genome update: correlation of bacterial genomic properties. Microbiology 2004 0.75
73 Genome update: base skews in 200+ bacterial chromosomes. Microbiology 2005 0.75