Published in BMC Genomics on March 25, 2014
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A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution. Plant Biotechnol J (2016) 0.77
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Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature (2007) 4.50
A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation. Proc Natl Acad Sci U S A (2005) 4.49
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol (2006) 4.33
Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell (2010) 4.19
PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development. Nature (2007) 3.95
The auxin influx carrier LAX3 promotes lateral root emergence. Nat Cell Biol (2008) 3.69
Phosphate availability alters architecture and causes changes in hormone sensitivity in the Arabidopsis root system. Plant Physiol (2002) 3.21
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Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiol (2009) 2.98
The main auxin biosynthesis pathway in Arabidopsis. Proc Natl Acad Sci U S A (2011) 2.87
ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J (2007) 2.84
Nitrate and phosphate availability and distribution have different effects on root system architecture of Arabidopsis. Plant J (2002) 2.83
pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol (2006) 2.77
Phosphate starvation triggers distinct alterations of genome expression in Arabidopsis roots and leaves. Plant Physiol (2003) 2.75
Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus. Plant Cell Environ (2007) 2.71
Root structure and functioning for efficient acquisition of phosphorus: Matching morphological and physiological traits. Ann Bot (2006) 2.71
MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant J (2007) 2.65
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An ancient mechanism controls the development of cells with a rooting function in land plants. Science (2007) 2.11
Phosphate availability alters lateral root development in Arabidopsis by modulating auxin sensitivity via a mechanism involving the TIR1 auxin receptor. Plant Cell (2008) 2.08
Cluster roots--an underground adaptation for survival in extreme environments. Trends Plant Sci (2002) 2.03
Lateral root development in Arabidopsis: fifty shades of auxin. Trends Plant Sci (2013) 1.97
Regulatory network of microRNA399 and PHO2 by systemic signaling. Plant Physiol (2008) 1.93
The effect of iron on the primary root elongation of Arabidopsis during phosphate deficiency. Plant Physiol (2008) 1.93
Genetic control of root development in rice, the model cereal. Trends Plant Sci (2010) 1.77
A role for auxin redistribution in the responses of the root system architecture to phosphate starvation in Arabidopsis. Plant Physiol (2005) 1.76
Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings. Plant Physiol (2009) 1.65
Root developmental adaptation to phosphate starvation: better safe than sorry. Trends Plant Sci (2011) 1.64
A PHABULOSA/cytokinin feedback loop controls root growth in Arabidopsis. Curr Biol (2012) 1.61
Reactive oxygen species and root hairs in Arabidopsis root response to nitrogen, phosphorus and potassium deficiency. Plant Cell Physiol (2005) 1.59
An indole-3-acetic acid carboxyl methyltransferase regulates Arabidopsis leaf development. Plant Cell (2005) 1.53
Interaction between phosphate-starvation, sugar, and cytokinin signaling in Arabidopsis and the roles of cytokinin receptors CRE1/AHK4 and AHK3. Plant Physiol (2005) 1.53
Genetic regulation by NLA and microRNA827 for maintaining nitrate-dependent phosphate homeostasis in arabidopsis. PLoS Genet (2011) 1.49
The emerging importance of the SPX domain-containing proteins in phosphate homeostasis. New Phytol (2012) 1.47
ER-resident proteins PDR2 and LPR1 mediate the developmental response of root meristems to phosphate availability. Proc Natl Acad Sci U S A (2009) 1.35
PHO2-dependent degradation of PHO1 modulates phosphate homeostasis in Arabidopsis. Plant Cell (2012) 1.34
Arabidopsis Tyrosylprotein sulfotransferase acts in the auxin/PLETHORA pathway in regulating postembryonic maintenance of the root stem cell niche. Plant Cell (2010) 1.28
Linking development and determinacy with organic acid efflux from proteoid roots of white lupin grown with low phosphorus and ambient or elevated atmospheric CO2 concentration Plant Physiol (1999) 1.28
An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants. Plant Physiol (2012) 1.21
Identification of downstream components of ubiquitin-conjugating enzyme PHOSPHATE2 by quantitative membrane proteomics in Arabidopsis roots. Plant Cell (2013) 1.19
RSL genes are sufficient for rhizoid system development in early diverging land plants. Development (2011) 1.18
The signal transducer NPH3 integrates the phototropin1 photosensor with PIN2-based polar auxin transport in Arabidopsis root phototropism. Plant Cell (2012) 1.18
Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery. Plant Cell (2013) 1.14
Conservation of lotus and Arabidopsis basic helix-loop-helix proteins reveals new players in root hair development. Plant Physiol (2009) 1.13
Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proc Natl Acad Sci U S A (2010) 1.12
Spatiotemporal regulation of lateral root organogenesis in Arabidopsis by cytokinin. Plant Cell (2012) 1.09
MicroRNAs as regulators of root development and architecture. Plant Mol Biol (2011) 1.07
The transcription factor PHR1 plays a key role in the regulation of sulfate shoot-to-root flux upon phosphate starvation in Arabidopsis. BMC Plant Biol (2011) 1.02
Walls are thin 1 (WAT1), an Arabidopsis homolog of Medicago truncatula NODULIN21, is a tonoplast-localized protein required for secondary wall formation in fibers. Plant J (2010) 1.01
A comparative proteome approach to decipher the mechanism of rice adaptation to phosphorous deficiency. Proteomics (2009) 0.98
The MPK6-ERF6-ROS-responsive cis-acting Element7/GCC box complex modulates oxidative gene transcription and the oxidative response in Arabidopsis. Plant Physiol (2013) 0.96
Arabidopsis ferritin 1 (AtFer1) gene regulation by the phosphate starvation response 1 (AtPHR1) transcription factor reveals a direct molecular link between iron and phosphate homeostasis. J Biol Chem (2013) 0.95
Update on lupin cluster roots. Update on white lupin cluster root acclimation to phosphorus deficiency. Plant Physiol (2011) 0.93
Lateral root formation and growth of Arabidopsis is redundantly regulated by cytokinin metabolism and signalling genes. J Exp Bot (2013) 0.89
Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa). New Phytol (2013) 0.88
The alternative respiratory pathway mediates carboxylate synthesis in white lupin cluster roots under phosphorus deprivation. Plant Cell Environ (2013) 0.77
Root-derived auxin contributes to the phosphorus-deficiency-induced cluster-root formation in white lupin (Lupinus albus). Physiol Plant (2012) 0.77
Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. Plant Cell (2007) 2.51
Agrobacterium tumefaciens-mediated transformation of maize embryos using a standard binary vector system. Plant Physiol (2002) 2.43
ARL1, a LOB-domain protein required for adventitious root formation in rice. Plant J (2005) 2.24
Evidence for a SAL1-PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis. Plant Cell (2011) 2.16
Molecular definition of the ascorbate-glutathione cycle in Arabidopsis mitochondria reveals dual targeting of antioxidant defenses in plants. J Biol Chem (2003) 1.96
Organization and regulation of mitochondrial respiration in plants. Annu Rev Plant Biol (2011) 1.82
A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice. Plant Cell Physiol (2005) 1.79
The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress. Plant Physiol (2008) 1.73
Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings. Plant Physiol (2009) 1.65
The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a. Plant Physiol (2009) 1.60
Involvement of OsSPX1 in phosphate homeostasis in rice. Plant J (2008) 1.53
Alternative oxidases in Arabidopsis: a comparative analysis of differential expression in the gene family provides new insights into function of non-phosphorylating bypasses. Biochim Biophys Acta (2006) 1.49
TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana. Plant Cell (2010) 1.47
The emerging importance of the SPX domain-containing proteins in phosphate homeostasis. New Phytol (2012) 1.47
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process. Plant Physiol (2008) 1.45
Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Plant Cell (2002) 1.44
Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana. Plant Mol Biol (2005) 1.41
Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets. BMC Plant Biol (2010) 1.41
Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia. Plant Physiol (2008) 1.39
Approaches to defining dual-targeted proteins in Arabidopsis. Plant J (2008) 1.37
The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress. Plant J (2009) 1.35
Mutation in nicotianamine aminotransferase stimulated the Fe(II) acquisition system and led to iron accumulation in rice. Plant Physiol (2007) 1.34
The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. Plant Cell (2013) 1.34
Cytokinin-mediated cell cycling arrest of pericycle founder cells in lateral root initiation of Arabidopsis. Plant Cell Physiol (2006) 1.32
Pentatricopeptide repeat domain protein 3 associates with the mitochondrial small ribosomal subunit and regulates translation. FEBS Lett (2009) 1.29
A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. Plant Physiol (2004) 1.27
A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis. Plant Cell (2013) 1.26
Improvement of phosphorus efficiency in rice on the basis of understanding phosphate signaling and homeostasis. Curr Opin Plant Biol (2013) 1.24
Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings. Plant Physiol (2009) 1.23
Uncoupling phosphate deficiency from its major effects on growth and transcriptome via PHO1 expression in Arabidopsis. Plant J (2011) 1.22
Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family. Cell Res (2009) 1.22
Towards an analysis of the rice mitochondrial proteome. Plant Physiol (2003) 1.22
Exploring the function-location nexus: using multiple lines of evidence in defining the subcellular location of plant proteins. Plant Cell (2009) 1.20
Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity. Plant Physiol (2008) 1.20
Functional definition of outer membrane proteins involved in preprotein import into mitochondria. Plant Cell (2007) 1.19
Pentatricopeptide repeat domain protein 1 lowers the levels of mitochondrial leucine tRNAs in cells. Nucleic Acids Res (2009) 1.19
Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice. Plant Physiol (2013) 1.18
Alternative oxidase: a target and regulator of stress responses. Physiol Plant (2009) 1.18
In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Plant Physiol (2011) 1.17
Protein transport in organelles: Dual targeting of proteins to mitochondria and chloroplasts. FEBS J (2009) 1.17
Analysis of the alternative oxidase promoters from soybean. Plant Physiol (2003) 1.17
Open abdominal management after damage-control laparotomy for trauma: a prospective observational American Association for the Surgery of Trauma multicenter study. J Trauma Acute Care Surg (2013) 1.17
Nicotianamine, a novel enhancer of rice iron bioavailability to humans. PLoS One (2010) 1.17
Ordered assembly of mitochondria during rice germination begins with pro-mitochondrial structures rich in components of the protein import apparatus. Plant Mol Biol (2006) 1.16
Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs. Plant Physiol (2009) 1.15
Tom22', an 8-kDa trans-site receptor in plants and protozoans, is a conserved feature of the TOM complex that appeared early in the evolution of eukaryotes. Mol Biol Evol (2004) 1.15
Characterization of the preprotein and amino acid transporter gene family in Arabidopsis. Plant Physiol (2006) 1.15
Spatio-temporal transcript profiling of rice roots and shoots in response to phosphate starvation and recovery. Plant Cell (2013) 1.14
Defining the mitochondrial stress response in Arabidopsis thaliana. Mol Plant (2009) 1.14
A novel in vitro system for simultaneous import of precursor proteins into mitochondria and chloroplasts. Plant J (2002) 1.13
Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia. New Phytol (2011) 1.12
Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis. Plant Physiol (2011) 1.11
Type II NAD(P)H dehydrogenases are targeted to mitochondria and chloroplasts or peroxisomes in Arabidopsis thaliana. FEBS Lett (2008) 1.11
Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana. Plant Cell (2009) 1.10
Molecular distinction between alternative oxidase from monocots and dicots. Plant Physiol (2002) 1.10
A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor. FEBS Lett (2004) 1.10
A rice cis-natural antisense RNA acts as a translational enhancer for its cognate mRNA and contributes to phosphate homeostasis and plant fitness. Plant Cell (2013) 1.08
Nine 3-ketoacyl-CoA thiolases (KATs) and acetoacetyl-CoA thiolases (ACATs) encoded by five genes in Arabidopsis thaliana are targeted either to peroxisomes or cytosol but not to mitochondria. Plant Mol Biol (2006) 1.08
Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis. Plant Physiol (2008) 1.08
Mitochondrial biogenesis and function in Arabidopsis. Arabidopsis Book (2008) 1.06
Oxygen initiation of respiration and mitochondrial biogenesis in rice. J Biol Chem (2007) 1.06
Differential gene expression and subcellular targeting of Arabidopsis glutathione S-transferase F8 is achieved through alternative transcription start sites. J Biol Chem (2007) 1.05
Protein import into mitochondria: origins and functions today (review). Mol Membr Biol (2005) 1.05
Nucleotide and RNA metabolism prime translational initiation in the earliest events of mitochondrial biogenesis during Arabidopsis germination. Plant Physiol (2012) 1.05
Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-MFS1 in controlling phosphate homeostasis in leaves. New Phytol (2012) 1.04
Regulation of alternative oxidase gene expression in soybean. Plant Mol Biol (2002) 1.03
Phosphate homeostasis in the yeast Saccharomyces cerevisiae, the key role of the SPX domain-containing proteins. FEBS Lett (2012) 1.03
The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana. Plant J (2011) 1.03
Characterization of mitochondrial alternative NAD(P)H dehydrogenases in Arabidopsis: intraorganelle location and expression. Plant Cell Physiol (2005) 1.02
The transcription factor PHR1 plays a key role in the regulation of sulfate shoot-to-root flux upon phosphate starvation in Arabidopsis. BMC Plant Biol (2011) 1.02
Superoxide stimulates a proton leak in potato mitochondria that is related to the activity of uncoupling protein. J Biol Chem (2003) 1.01
Qualitative assessment of the inferior vena cava: useful tool for the evaluation of fluid status in critically ill patients. Am Surg (2012) 1.01
Gene transfer from mitochondrion to nucleus: novel mechanisms for gene activation from Cox2. Plant J (2002) 1.01
Characterization of the targeting signal of dual-targeted pea glutathione reductase. Plant Mol Biol (2003) 1.01
Intracellular gene transfer: reduced hydrophobicity facilitates gene transfer for subunit 2 of cytochrome c oxidase. Proc Natl Acad Sci U S A (2002) 1.01
A dual-targeted purple acid phosphatase in Arabidopsis thaliana moderates carbon metabolism and its overexpression leads to faster plant growth and higher seed yield. New Phytol (2012) 1.00
Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. J Exp Bot (2010) 1.00
Newfoundland rod-cone dystrophy, an early-onset retinal dystrophy, is caused by splice-junction mutations in RLBP1. Am J Hum Genet (2002) 1.00
Emergency tracheal intubation immediately following traumatic injury: an Eastern Association for the Surgery of Trauma practice management guideline. J Trauma Acute Care Surg (2012) 1.00
Chlorophyll biosynthesis. Expression of a second chl I gene of magnesium chelatase in Arabidopsis supports only limited chlorophyll synthesis. Plant Physiol (2002) 1.00
Unique components of the plant mitochondrial protein import apparatus. Biochim Biophys Acta (2012) 0.99
Prohibitins: mitochondrial partners in development and stress response. Trends Plant Sci (2010) 0.99
Dual location of the mitochondrial preprotein transporters B14.7 and Tim23-2 in complex I and the TIM17:23 complex in Arabidopsis links mitochondrial activity and biogenesis. Plant Cell (2012) 0.97
Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana. BMC Plant Biol (2010) 0.97
Antagonistic, overlapping and distinct responses to biotic stress in rice (Oryza sativa) and interactions with abiotic stress. BMC Genomics (2013) 0.96
Analysis of the rice mitochondrial carrier family reveals anaerobic accumulation of a basic amino acid carrier involved in arginine metabolism during seed germination. Plant Physiol (2010) 0.96
Zinc-dependent intermembrane space proteins stimulate import of carrier proteins into plant mitochondria. Plant J (2002) 0.96
AtWRKY40 and AtWRKY63 modulate the expression of stress-responsive nuclear genes encoding mitochondrial and chloroplast proteins. Plant Physiol (2013) 0.96
Cyclin-dependent kinase E1 (CDKE1) provides a cellular switch in plants between growth and stress responses. J Biol Chem (2012) 0.96
Findings of a randomized controlled trial using limited transthoracic echocardiogram (LTTE) as a hemodynamic monitoring tool in the trauma bay. J Trauma Acute Care Surg (2014) 0.95
Using next-generation sequencing for the diagnosis of rare disorders: a family with retinitis pigmentosa and skeletal abnormalities. J Pathol (2011) 0.94