Published in Eukaryot Cell on April 04, 2014
Abf1 and other general regulatory factors control ribosome biogenesis gene expression in budding yeast. Nucleic Acids Res (2017) 0.75
The Role of Transcription Factors at Antisense-Expressing Gene Pairs in Yeast. Genome Biol Evol (2016) 0.75
RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res (2007) 85.81
Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell (2000) 36.09
OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res (2003) 33.03
The economics of ribosome biosynthesis in yeast. Trends Biochem Sci (1999) 15.22
A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet (2007) 12.21
The biology of chromatin remodeling complexes. Annu Rev Biochem (2009) 10.02
A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat Genet (2000) 9.47
Nuclear organization of the genome and the potential for gene regulation. Nature (2007) 8.22
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res (2008) 7.89
Saccharomyces cerevisiae GAL1-GAL10 divergent promoter region: location and function of the upstream activating sequence UASG. Mol Cell Biol (1984) 7.83
Yeast LEU2. Repression of mRNA levels by leucine and primary structure of the gene product. J Biol Chem (1984) 5.84
Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. Mol Cell (2007) 5.67
Ribosome assembly in eukaryotes. Gene (2003) 5.37
Making ribosomes. Curr Opin Cell Biol (2002) 5.20
A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size. Genes Dev (2004) 5.08
A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol Cell (2004) 4.54
TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1. Cell (2004) 4.21
Histone modification levels are predictive for gene expression. Proc Natl Acad Sci U S A (2010) 4.00
How Saccharomyces responds to nutrients. Annu Rev Genet (2008) 3.92
Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction. Mol Cell Biol (1999) 3.90
The delitto perfetto approach to in vivo site-directed mutagenesis and chromosome rearrangements with synthetic oligonucleotides in yeast. Methods Enzymol (2006) 2.84
Ribosome biogenesis: of knobs and RNA processing. Exp Cell Res (2004) 2.70
Inducible gene expression: diverse regulatory mechanisms. Nat Rev Genet (2010) 2.53
The transcriptional activity of RNA polymerase I is a key determinant for the level of all ribosome components. Genes Dev (2006) 2.46
Controlling gene expression in response to stress. Nat Rev Genet (2011) 2.33
The specificity and topology of chromatin interaction pathways in yeast. Mol Cell (2011) 2.04
Tor pathway regulates Rrn3p-dependent recruitment of yeast RNA polymerase I to the promoter but does not participate in alteration of the number of active genes. Mol Biol Cell (2003) 1.89
Ras and Gpa2 mediate one branch of a redundant glucose signaling pathway in yeast. PLoS Biol (2004) 1.76
A physiological role for gene loops in yeast. Genes Dev (2009) 1.73
Disentangling the many layers of eukaryotic transcriptional regulation. Annu Rev Genet (2012) 1.68
Intergenic transcription causes repression by directing nucleosome assembly. Genes Dev (2010) 1.61
Sfp1 plays a key role in yeast ribosome biogenesis. Eukaryot Cell (2003) 1.45
The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes. Yeast (2006) 1.37
SWI/SNF displaces SAGA-acetylated nucleosomes. Eukaryot Cell (2006) 1.36
Formation of boundaries of transcriptionally silent chromatin by nucleosome-excluding structures. Mol Cell Biol (2004) 1.32
The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress. Genome Biol (2009) 1.29
Long-range communication between the silencers of HMR. Mol Cell Biol (2008) 1.28
Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae. J Biol Chem (2007) 1.28
EBP2 is a member of the yeast RRB regulon, a transcriptionally coregulated set of genes that are required for ribosome and rRNA biosynthesis. Mol Cell Biol (2001) 1.27
Control of eukaryotic gene expression: gene loops and transcriptional memory. Adv Enzyme Regul (2010) 1.24
Gene looping is conferred by activator-dependent interaction of transcription initiation and termination machineries. J Biol Chem (2009) 1.21
Chromosomal boundaries in S. cerevisiae. Curr Opin Genet Dev (2001) 1.18
Systematic identification of gene annotation errors in the widely used yeast mutation collections. Nat Methods (2012) 1.17
Detection of gene loops by 3C in yeast. Methods (2009) 1.02
Promoter architectures in the yeast ribosomal expression program. Transcription (2011) 0.91
The role of chromatin structure in regulating stress-induced transcription in Saccharomyces cerevisiae. Biochem Cell Biol (2006) 0.90
Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study. Microbiology (2008) 0.86
The adjacent positioning of co-regulated gene pairs is widely conserved across eukaryotes. BMC Genomics (2012) 0.81
Adjacent gene pairing plays a role in the coordinated expression of ribosome biogenesis genes MPP10 and YJR003C in Saccharomyces cerevisiae. Eukaryot Cell (2010) 0.78
Transcription regulation of a yeast gene from a downstream location. J Mol Biol (2012) 0.77