Published in Genetics on May 01, 2014
A meiosis-specific Spt5 homolog involved in non-coding transcription. Nucleic Acids Res (2017) 0.75
Preferential expression of scores of functionally and evolutionarily diverse DNA and RNA-binding proteins during Oxytricha trifallax macronuclear development. PLoS One (2017) 0.75
Thousands of RNA-cached copies of whole chromosomes are present in the ciliate Oxytricha during development. RNA (2017) 0.75
BLAT--the BLAST-like alignment tool. Genome Res (2002) 126.78
Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol (2003) 102.57
NIH Image to ImageJ: 25 years of image analysis. Nat Methods (2012) 84.41
Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc (2008) 62.52
The Pfam protein families database. Nucleic Acids Res (2011) 33.46
In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc (2006) 16.56
Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. Anal Chem (2003) 13.58
Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat Methods (2007) 8.94
Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Science (2001) 8.92
Dosage sensitivity and the evolution of gene families in yeast. Nature (2003) 6.77
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution. Cell (1999) 5.88
The DNA of ciliated protozoa. Microbiol Rev (1994) 5.79
PIWI-interacting small RNAs: the vanguard of genome defence. Nat Rev Mol Cell Biol (2011) 5.59
Architecture of RNA polymerase II and implications for the transcription mechanism. Science (2000) 5.12
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature (2006) 5.06
Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat Rev Genet (2012) 4.37
Evolution from fish to mammals by gene duplication. Hereditas (1968) 3.95
RNA polymerase II is required for RNAi-dependent heterochromatin assembly. Science (2005) 3.94
DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration. Nature (2011) 3.90
RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing. Genes Dev (2005) 2.99
RNA-mediated epigenetic programming of a genome-rearrangement pathway. Nature (2007) 2.79
The X-ray crystal structure of RNA polymerase from Archaea. Nature (2008) 2.78
RNA polymerase II subunits link transcription and mRNA decay to translation. Cell (2010) 2.67
DNA of ciliated protozoa: DNA sequence diminution during macronuclear development of Oxytricha. Cell (1976) 2.60
The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. PLoS Biol (2013) 2.08
Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement. Cell (2012) 1.95
Monoclonal antibodies to double-stranded RNA as probes of RNA structure in crude nucleic acid extracts. Nucleic Acids Res (1991) 1.92
A theoretical approach to select effective antisense oligodeoxyribonucleotides at high statistical probability. Nucleic Acids Res (1999) 1.73
The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs. Genes Dev (2005) 1.60
piRNAs, transposon silencing, and Drosophila germline development. J Cell Biol (2010) 1.55
A functional role for transposases in a large eukaryotic genome. Science (2009) 1.46
Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure. PLoS Biol (2009) 1.36
The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms. J Cell Biol (2007) 1.26
Distinct functions for the Drosophila piRNA pathway in genome maintenance and telomere protection. PLoS Genet (2010) 1.19
Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax. Genome Biol (2012) 1.00
The Oxytricha trifallax mitochondrial genome. Genome Biol Evol (2011) 0.98
The evolutionary origin of a complex scrambled gene. Proc Natl Acad Sci U S A (2005) 0.92