Published in Genome Biol Evol on June 19, 2014
Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano. Proc Natl Acad Sci U S A (2015) 0.87
Construction of relatedness matrices using genotyping-by-sequencing data. BMC Genomics (2015) 0.86
Unraveling the complexity of transcriptomic, metabolomic and quality environmental response of tomato fruit. BMC Plant Biol (2017) 0.78
Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection. BMC Genomics (2016) 0.78
Gene duplication, population genomics, and species-level differentiation within a tropical mountain shrub. Genome Biol Evol (2014) 0.76
Sequence analysis and identification of new isoform of EP4 receptors in different atlantic salmon tissues (Salmo salar L.) and its role in PGE2 induced immunomodulation in vitro. PLoS One (2015) 0.76
Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates. BMC Res Notes (2015) 0.75
Temporal stability in patterns of genetic diversity and structure of a marine foundation species (Zostera marina). Heredity (Edinb) (2016) 0.75
De Novo Transcriptome Characterization of a Sterilizing Trematode Parasite (Microphallus sp.) from Two Species of New Zealand Snails. G3 (Bethesda) (2017) 0.75
Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics (2005) 46.40
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol (1986) 36.06
The evolutionary fate and consequences of duplicate genes. Science (2000) 24.22
Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res (2011) 18.50
The use of gene clusters to infer functional coupling. Proc Natl Acad Sci U S A (1999) 16.35
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics (2007) 12.21
GenBank. Nucleic Acids Res (2006) 12.21
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res (2006) 8.36
Dosage sensitivity and the evolution of gene families in yeast. Nature (2003) 6.77
Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol (2005) 6.46
Selection in the evolution of gene duplications. Genome Biol (2002) 5.58
Gene duplication in tetraploid fish: model for gene silencing at unlinked duplicated loci. Proc Natl Acad Sci U S A (1978) 4.53
The loci of evolution: how predictable is genetic evolution? Evolution (2008) 4.31
KaKs_Calculator: calculating Ka and Ks through model selection and model averaging. Genomics Proteomics Bioinformatics (2006) 4.15
The evolutionary significance of ancient genome duplications. Nat Rev Genet (2009) 3.95
Consequences of genome duplication. Curr Opin Genet Dev (2007) 2.72
Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Res (2004) 2.72
Gene duplication: the genomic trade in spare parts. PLoS Biol (2004) 2.66
The gene balance hypothesis: from classical genetics to modern genomics. Plant Cell (2007) 2.56
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Nat Commun (2014) 2.36
A linkage map of the Atlantic salmon (Salmo salar) based on EST-derived SNP markers. BMC Genomics (2008) 2.07
Sequencing the genome of the Atlantic salmon (Salmo salar). Genome Biol (2010) 2.06
A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics (2011) 2.03
Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes. BMC Evol Biol (2009) 2.03
Functional analysis of gene duplications in Saccharomyces cerevisiae. Genetics (2006) 1.96
Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon). BMC Genomics (2008) 1.86
Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids. BMC Genomics (2007) 1.75
The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution. New Phytol (2009) 1.72
A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. BMC Genomics (2008) 1.68
A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification. Proc Biol Sci (2014) 1.38
Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. BMC Genomics (2010) 1.30
Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes. Genome Biol (2013) 1.18
Genomic organization of duplicated major histocompatibility complex class I regions in Atlantic salmon (Salmo salar). BMC Genomics (2007) 1.14
Evolution of ancient functions in the vertebrate insulin-like growth factor system uncovered by study of duplicated salmonid fish genomes. Mol Biol Evol (2013) 1.13
Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis. BMC Bioinformatics (2009) 1.12
What happens to genes in duplicated genomes. Proc Natl Acad Sci U S A (2003) 1.08
A dense linkage map for Chinook salmon (Oncorhynchus tshawytscha) reveals variable chromosomal divergence after an ancestral whole genome duplication event. G3 (Bethesda) (2014) 1.05
The roles of whole-genome and small-scale duplications in the functional specialization of Saccharomyces cerevisiae genes. PLoS Genet (2013) 1.05
Melatonin effects on the hypothalamo-pituitary axis in fish. Trends Endocrinol Metab (2007) 1.03
Evaluating dosage compensation as a cause of duplicate gene retention in Paramecium tetraurelia. Genome Biol (2007) 1.00
Functional diversification of paralogous transcription factors via divergence in DNA binding site motif and in expression. PLoS One (2008) 0.99
Genomic organization and evolution of the vomeronasal type 2 receptor-like (OlfC) gene clusters in Atlantic salmon, Salmo salar. Mol Biol Evol (2009) 0.98
Leptin and leptin receptor genes in Atlantic salmon: Cloning, phylogeny, tissue distribution and expression correlated to long-term feeding status. Gen Comp Endocrinol (2010) 0.98
Duplicated paralogous genes subject to positive selection in the genome of Trypanosoma brucei. PLoS One (2008) 0.95
Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants. Plant Physiol (2013) 0.95
Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications. BMC Genomics (2012) 0.95
Evolutionary dynamics and functional specialization of plant paralogs formed by whole and small-scale genome duplications. Mol Biol Evol (2012) 0.94
Interferon type I and type II responses in an Atlantic salmon (Salmo salar) SHK-1 cell line by the salmon TRAITS/SGP microarray. Physiol Genomics (2007) 0.93
Smoltification and seawater adaptation in Atlantic salmon (Salmo salar): plasma prolactin, growth hormone, and thyroid hormones. Gen Comp Endocrinol (1989) 0.92
Exploring the transcriptome of Atlantic salmon (Salmo salar) skin, a major defense organ. Mar Biotechnol (NY) (2012) 0.89
Salmonid genomes have a remarkably expanded akirin family, coexpressed with genes from conserved pathways governing skeletal muscle growth and catabolism. Physiol Genomics (2010) 0.88
Odorant receptor gene expression changes during the parr-smolt transformation in Atlantic salmon. Mol Ecol (2004) 0.88
Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Mol Phylogenet Evol (2013) 0.88
Genetic robustness and functional evolution of gene duplicates. Nucleic Acids Res (2013) 0.86
Identification of olfactory receptor genes in Atlantic salmon Salmo salar. J Fish Biol (2012) 0.85
Regulation dynamics of WGD genes during yeast metabolic oscillation. Mol Biol Evol (2008) 0.83
Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesized Brassica napus allotetraploids. New Phytol (2013) 0.81
Assignment of Chinook salmon (Oncorhynchus tshawytscha) linkage groups to specific chromosomes reveals a karyotype with multiple rearrangements of the chromosome arms of rainbow trout (Oncorhynchus mykiss). G3 (Bethesda) (2013) 0.81
Isolation and characterization of melanopsin photoreceptors of Atlantic salmon (Salmo salar). J Comp Neurol (2012) 0.79
Gene duplicability-connectivity-complexity across organisms and a neutral evolutionary explanation. PLoS One (2012) 0.79
The effect of functional compensation among duplicate genes can constrain their evolutionary divergence. J Genet (2012) 0.78