Published in Rice (N Y) on July 08, 2014
The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice. J Integr Plant Biol (2016) 0.80
The state of play in higher eukaryote gene annotation. Nat Rev Genet (2016) 0.77
Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice. Front Plant Sci (2016) 0.76
Rice grain nutritional traits and their enhancement using relevant genes and QTLs through advanced approaches. Springerplus (2016) 0.75
Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics. Curr Genomics (2016) 0.75
Improvement of Rice Biomass Yield through QTL-Based Selection. PLoS One (2016) 0.75
Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield. PLoS One (2017) 0.75
RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet (2009) 58.77
A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78
The map-based sequence of the rice genome. Nature (2005) 24.17
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science (2002) 21.26
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature (2008) 18.84
Limitations of next-generation genome sequence assembly. Nat Methods (2010) 9.04
Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75
Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell (2000) 6.93
Next-generation DNA sequencing techniques. N Biotechnol (2009) 6.02
Green revolution: a mutant gibberellin-synthesis gene in rice. Nature (2002) 5.84
High-throughput genotyping by whole-genome resequencing. Genome Res (2009) 5.74
Genetic structure and diversity in Oryza sativa L. Genetics (2005) 5.74
Cytokinin oxidase regulates rice grain production. Science (2005) 5.60
Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet (2008) 5.57
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet (2006) 5.51
Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat Commun (2011) 5.41
Rice domestication by reducing shattering. Science (2006) 5.11
A map of rice genome variation reveals the origin of cultivated rice. Nature (2012) 4.92
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat Biotechnol (2011) 4.84
An SNP caused loss of seed shattering during rice domestication. Science (2006) 4.78
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci U S A (2009) 4.65
Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses. Genome Res (2009) 4.47
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet (2011) 4.19
RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing. Methods (2009) 4.02
High-throughput DNA sequencing--concepts and limitations. Bioessays (2010) 3.77
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat Genet (2010) 3.56
Strategies for developing Green Super Rice. Proc Natl Acad Sci U S A (2007) 3.45
Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev (2004) 3.35
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res (2010) 3.34
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell (2010) 2.92
New insights into the history of rice domestication. Trends Genet (2007) 2.88
Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice. Plant Cell (2006) 2.82
Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq. Genome Res (2010) 2.73
Genome sequencing reveals agronomically important loci in rice using MutMap. Nat Biotechnol (2012) 2.69
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci U S A (2010) 2.63
Molecular evidence for a single evolutionary origin of domesticated rice. Proc Natl Acad Sci U S A (2011) 2.53
Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics (2010) 2.45
Control of a key transition from prostrate to erect growth in rice domestication. Nat Genet (2008) 2.42
Genome-wide transcription analyses in rice using tiling microarrays. Nat Genet (2005) 2.39
Next-generation mapping of Arabidopsis genes. Plant J (2011) 2.39
The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene. Plant J (1995) 2.29
Genetic control of rice plant architecture under domestication. Nat Genet (2008) 2.17
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell (2011) 1.93
QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations. Plant J (2013) 1.85
Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers. PLoS One (2011) 1.84
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol Biol (2005) 1.84
DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously. Plant Physiol (2010) 1.80
Crop genome sequencing: lessons and rationales. Trends Plant Sci (2011) 1.77
Two evolutionary histories in the genome of rice: the roles of domestication genes. PLoS Genet (2011) 1.63
Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA. Cell Res (2012) 1.63
Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport. Plant Physiol (2008) 1.54
Allelic diversification at the C (OsC1) locus of wild and cultivated rice: nucleotide changes associated with phenotypes. Genetics (2004) 1.50
Fast-forward genetics enabled by new sequencing technologies. Trends Plant Sci (2011) 1.48
Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences. Proc Natl Acad Sci U S A (2013) 1.48
Rice 2020: a call for an international coordinated effort in rice functional genomics. Mol Plant (2008) 1.45
Advantages and limitations of next-generation sequencing technologies: a comparison of electrophoresis and non-electrophoresis methods. Electrophoresis (2008) 1.41
The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development. Dev Biol (2001) 1.35
Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines. Theor Appl Genet (2010) 1.34
EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice. Plant Cell Physiol (2005) 1.33
The role of QTLs in the breeding of high-yielding rice. Trends Plant Sci (2011) 1.31
TAC1, a major quantitative trait locus controlling tiller angle in rice. Plant J (2007) 1.27
Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing. Plant Biotechnol J (2012) 1.26
Genetic control of a transition from black to straw-white seed hull in rice domestication. Plant Physiol (2011) 1.22
Map-based cloning of the ALK gene, which controls the gelatinization temperature of rice. Sci China C Life Sci (2003) 1.21
Genome-wide analysis of spatial and temporal gene expression in rice panicle development. Plant J (2006) 1.20
Identification and characterization of NARROW AND ROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice. Plant Mol Biol (2010) 1.19
A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription. Plant Cell (2005) 1.18
Resequencing rice genomes: an emerging new era of rice genomics. Trends Genet (2013) 1.16
Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray. PLoS One (2007) 1.16
Characterizations and fine mapping of a mutant gene for high tillering and dwarf in rice (Oryza sativa L.). Planta (2005) 1.12
Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.). BMC Genomics (2010) 1.09
Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza. Plant J (2010) 0.97
Sequencing-based genome-wide association study in rice. Curr Opin Plant Biol (2013) 0.95
Genomic dissection of small RNAs in wild rice (Oryza rufipogon): lessons for rice domestication. New Phytol (2012) 0.93
Genetic analysis of an elite super-hybrid rice parent using high-density SNP markers. Rice (N Y) (2013) 0.89
Genes offering the potential for designing yield-related traits in rice. Curr Opin Plant Biol (2013) 0.88
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure. Plant J (2009) 0.85
Dynamic intra-japonica subspecies variation and resource application. Mol Plant (2011) 0.85
A BAC physical map of aus rice cultivar 'Kasalath', and the map-based genomic sequence of 'Kasalath' chromosome 1. Plant J (2013) 0.82
Recent progress using high-throughput sequencing technologies in plant molecular breeding. J Integr Plant Biol (2012) 0.80
OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice. Theor Appl Genet (2012) 0.80
SNP-based analysis of genetic diversity in anther-derived rice by whole genome sequencing. Rice (N Y) (2013) 0.80
Efficacy of microarray profiling data combined with QTL mapping for the identification of a QTL gene controlling the initial growth rate in rice. Plant Cell Physiol (2012) 0.77
COLD1 confers chilling tolerance in rice. Cell (2015) 2.44
DWARF 53 acts as a repressor of strigolactone signalling in rice. Nature (2013) 2.26
Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in rice. Plant Cell (2014) 1.17
Strigolactones regulate rice tiller angle by attenuating shoot gravitropism through inhibiting auxin biosynthesis. Proc Natl Acad Sci U S A (2014) 0.88
Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling. Nat Commun (2015) 0.82
Rational design of high-yield and superior-quality rice. Nat Plants (2017) 0.76
Rice Ferredoxin-Dependent Glutamate Synthase Regulates Nitrogen-Carbon Metabolomes and Is Genetically Differentiated between japonica and indica Subspecies. Mol Plant (2016) 0.75
QTL editing confers opposing yield performance in different rice varieties. J Integr Plant Biol (2016) 0.75