Published in Nat Genet on July 06, 2008
Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75
A map of rice genome variation reveals the origin of cultivated rice. Nature (2012) 4.92
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet (2011) 4.19
The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature (2009) 3.74
OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat Genet (2010) 3.23
Natural variation at the DEP1 locus enhances grain yield in rice. Nat Genet (2009) 3.15
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res (2010) 2.71
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci U S A (2010) 2.63
Genome-wide genetic changes during modern breeding of maize. Nat Genet (2012) 2.60
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One (2010) 2.59
Control of grain size, shape and quality by OsSPL16 in rice. Nat Genet (2012) 2.58
Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nat Genet (2011) 2.50
Evolutionary history of GS3, a gene conferring grain length in rice. Genetics (2009) 2.33
Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Proc Natl Acad Sci U S A (2010) 2.27
A genetic framework for grain size and shape variation in wheat. Plant Cell (2010) 2.06
Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers. PLoS One (2011) 1.84
Unraveling the complex trait of crop yield with quantitative trait loci mapping in Brassica napus. Genetics (2009) 1.84
SmartGrain: high-throughput phenotyping software for measuring seed shape through image analysis. Plant Physiol (2012) 1.82
DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously. Plant Physiol (2010) 1.80
Genetic perspectives on crop domestication. Trends Plant Sci (2010) 1.79
Towards the understanding of complex traits in rice: substantially or superficially? DNA Res (2009) 1.75
Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice. Proc Natl Acad Sci U S A (2012) 1.70
Genetic composition of yield heterosis in an elite rice hybrid. Proc Natl Acad Sci U S A (2012) 1.63
Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield. Nat Genet (2013) 1.57
Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A (2011) 1.50
Archaeological and genetic insights into the origins of domesticated rice. Proc Natl Acad Sci U S A (2014) 1.47
Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice. BMC Plant Biol (2011) 1.44
SNP-based analysis of genetic diversity reveals important alleles associated with seed size in rice. BMC Plant Biol (2016) 1.42
NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars. Proc Natl Acad Sci U S A (2013) 1.42
Local maternal control of seed size by KLUH/CYP78A5-dependent growth signaling. Proc Natl Acad Sci U S A (2009) 1.40
Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters. Rice (N Y) (2015) 1.38
Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines. Theor Appl Genet (2010) 1.34
Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis. Nat Commun (2015) 1.32
The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3. Cell Res (2012) 1.28
Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7. BMC Genet (2010) 1.27
Copy number variation at the GL7 locus contributes to grain size diversity in rice. Nat Genet (2015) 1.27
Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication. Genetics (2009) 1.26
Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice. Nat Commun (2014) 1.26
Open access resources for genome-wide association mapping in rice. Nat Commun (2016) 1.26
A natural variant of NAL1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate. Sci Rep (2013) 1.25
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica. Genome Biol (2014) 1.24
Genetic control of a transition from black to straw-white seed hull in rice domestication. Plant Physiol (2011) 1.22
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc Natl Acad Sci U S A (2010) 1.22
Natural variation in an ABC transporter gene associated with seed size evolution in tomato species. PLoS Genet (2009) 1.15
The ubiquitin receptor DA1 interacts with the E3 ubiquitin ligase DA2 to regulate seed and organ size in Arabidopsis. Plant Cell (2013) 1.12
Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated rice. DNA Res (2014) 1.11
Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.). BMC Genomics (2010) 1.09
Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight. BMC Plant Biol (2010) 1.07
Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L. Mol Genet Genomics (2010) 1.07
Identification and independent validation of a stable yield and thousand grain weight QTL on chromosome 6A of hexaploid wheat (Triticum aestivum L.). BMC Plant Biol (2014) 1.06
Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice. PLoS One (2012) 1.06
Fine-mapping of qRL6.1, a major QTL for root length of rice seedlings grown under a wide range of NH4(+) concentrations in hydroponic conditions. Theor Appl Genet (2010) 1.03
OsSPL13 controls grain size in cultivated rice. Nat Genet (2016) 1.02
Australian wild rice reveals pre-domestication origin of polymorphism deserts in rice genome. PLoS One (2014) 1.02
Identification of candidate genes of QTLs for seed weight in Brassica napus through comparative mapping among Arabidopsis and Brassica species. BMC Genet (2012) 0.97
Development and evaluation of chromosome segment substitution lines (CSSLs) carrying chromosome segments derived from Oryza rufipogon in the genetic background of Oryza sativa L. Breed Sci (2014) 0.96
Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice. Proc Natl Acad Sci U S A (2014) 0.95
Japonica rice carried to, not from, Southeast Asia. Nat Genet (2008) 0.95
Genomic regions involved in yield potential detected by genome-wide association analysis in Japanese high-yielding rice cultivars. BMC Genomics (2014) 0.94
Designing climate-resilient rice with ideal grain quality suited for high-temperature stress. J Exp Bot (2015) 0.93
Short grain1 decreases organ elongation and brassinosteroid response in rice. Plant Physiol (2011) 0.92
Rapid identification of major QTLs associated with rice grain weight and their utilization. PLoS One (2015) 0.91
The ubiquitin receptor DA1 regulates seed and organ size by modulating the stability of the ubiquitin-specific protease UBP15/SOD2 in Arabidopsis. Plant Cell (2014) 0.91
Exploring the rice dispensable genome using a metagenome-like assembly strategy. Genome Biol (2015) 0.91
Genome-wide association for grain morphology in synthetic hexaploid wheats using digital imaging analysis. BMC Plant Biol (2014) 0.90
Ubiquitin-mediated control of seed size in plants. Front Plant Sci (2014) 0.90
Homologous haplotypes, expression, genetic effects and geographic distribution of the wheat yield gene TaGW2. BMC Plant Biol (2014) 0.90
Genetic control of inflorescence architecture during rice domestication. Nat Commun (2013) 0.90
Crop plants as models for understanding plant adaptation and diversification. Front Plant Sci (2013) 0.90
Natural variation in ARF18 gene simultaneously affects seed weight and silique length in polyploid rapeseed. Proc Natl Acad Sci U S A (2015) 0.90
Multiple and independent origins of short seeded alleles of GS3 in rice. Breed Sci (2013) 0.89
PosMed-plus: an intelligent search engine that inferentially integrates cross-species information resources for molecular breeding of plants. Plant Cell Physiol (2009) 0.89
The BnGRF2 gene (GRF2-like gene from Brassica napus) enhances seed oil production through regulating cell number and plant photosynthesis. J Exp Bot (2012) 0.89
Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice. Proc Natl Acad Sci U S A (2015) 0.88
An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG. Breed Sci (2012) 0.87
Genome-wide copy number variations in Oryza sativa L. BMC Genomics (2013) 0.86
The Birth of a Black Rice Gene and Its Local Spread by Introgression. Plant Cell (2015) 0.84
Rice-Map: a new-generation rice genome browser. BMC Genomics (2011) 0.84
Comparative Genetics of Seed Size Traits in Divergent Cereal Lineages Represented by Sorghum (Panicoidae) and Rice (Oryzoidae). G3 (Bethesda) (2015) 0.84
Relationship between grain yield and quality in rice germplasms grown across different growing areas. Breed Sci (2015) 0.83
QTL mapping reveals a tight linkage between QTLs for grain weight and panicle spikelet number in rice. Rice (N Y) (2013) 0.83
Advanced backcross QTL analysis reveals complicated genetic control of rice grain shape in a japonica × indica cross. Breed Sci (2015) 0.83
Differential expression of GS5 regulates grain size in rice. J Exp Bot (2015) 0.83
Genome-wide indel markers shared by diverse Asian rice cultivars compared to Japanese rice cultivar 'Koshihikari'. Breed Sci (2015) 0.83
Reassessment of the Four Yield-related Genes Gn1a, DEP1, GS3, and IPA1 in Rice Using a CRISPR/Cas9 System. Front Plant Sci (2016) 0.83
The Genetic Basis of Natural Variation in Kernel Size and Related Traits Using a Four-Way Cross Population in Maize. PLoS One (2016) 0.82
The rice HGW gene encodes a ubiquitin-associated (UBA) domain protein that regulates heading date and grain weight. PLoS One (2012) 0.82
Application of resequencing to rice genomics, functional genomics and evolutionary analysis. Rice (N Y) (2014) 0.82
Endopolyploidy as a potential alternative adaptive strategy for Arabidopsis leaf size variation in response to UV-B. J Exp Bot (2014) 0.82
Identification of genome-wide variations among three elite restorer lines for hybrid-rice. PLoS One (2012) 0.82
Identification of genomic regions and the isoamylase gene for reduced grain chalkiness in rice. PLoS One (2015) 0.82
Natural Variations in SLG7 Regulate Grain Shape in Rice. Genetics (2015) 0.81
QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea. Plant Biotechnol J (2016) 0.80
The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice. J Integr Plant Biol (2016) 0.80
Genome-Wide Association Study of Grain Appearance and Milling Quality in a Worldwide Collection of Indica Rice Germplasm. PLoS One (2015) 0.80
Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions. PLoS One (2016) 0.79
Genetic analysis for rice grain quality traits in the YVB stable variant line using RAD-seq. Mol Genet Genomics (2015) 0.79
Association Analysis in Rice: From Application to Utilization. Front Plant Sci (2016) 0.79
Genome wide association mapping for grain shape traits in indica rice. Planta (2016) 0.79
Population genetic structure of Oryza sativa in East and Southeast Asia and the discovery of elite alleles for grain traits. Sci Rep (2015) 0.79
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res (2002) 6.65
The genome sequence and structure of rice chromosome 1. Nature (2002) 4.99
A silicon transporter in rice. Nature (2006) 4.86
An SNP caused loss of seed shattering during rice domestication. Science (2006) 4.78
Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol (2002) 4.49
Adaptation of photoperiodic control pathways produces short-day flowering in rice. Nature (2003) 3.58
Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev (2004) 3.35
An efflux transporter of silicon in rice. Nature (2007) 3.08
Loss of function of a proline-containing protein confers durable disease resistance in rice. Science (2009) 3.03
Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc Natl Acad Sci U S A (2007) 2.82
Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice. Genes Dev (2002) 2.67
Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions. Nat Genet (2013) 2.46
Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics (2010) 2.45
A comprehensive rice transcript map containing 6591 expressed sequence tag sites. Plant Cell (2002) 2.39
A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length. Plant Cell (2005) 2.30
Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice. Plant Cell (2005) 2.09
Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii. Plant Physiol (2002) 1.86
SmartGrain: high-throughput phenotyping software for measuring seed shape through image analysis. Plant Physiol (2012) 1.82
Response of rice to Al stress and identification of quantitative trait Loci for Al tolerance. Plant Cell Physiol (2002) 1.80
A bacterial-type ABC transporter is involved in aluminum tolerance in rice. Plant Cell (2009) 1.77
Deciphering and prediction of transcriptome dynamics under fluctuating field conditions. Cell (2012) 1.76
Towards the understanding of complex traits in rice: substantially or superficially? DNA Res (2009) 1.75
An integrated high-density linkage map of soybean with RFLP, SSR, STS, and AFLP markers using A single F2 population. DNA Res (2008) 1.73
Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development. Plant Cell (2003) 1.71
Gene limiting cadmium accumulation in rice. Proc Natl Acad Sci U S A (2010) 1.68
A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice. Plant Cell (2009) 1.62
Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance. Genetics (2008) 1.61
A pair of floral regulators sets critical day length for Hd3a florigen expression in rice. Nat Genet (2010) 1.58
Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1. Plant Physiol (2008) 1.58
Comparative biology comes into bloom: genomic and genetic comparison of flowering pathways in rice and Arabidopsis. Curr Opin Plant Biol (2003) 1.57
Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice. Theor Appl Genet (2008) 1.50
Artificial selection for a green revolution gene during japonica rice domestication. Proc Natl Acad Sci U S A (2011) 1.50
Diverse variation of reproductive barriers in three intraspecific rice crosses. Genetics (2002) 1.49
Physical maps and recombination frequency of six rice chromosomes. Plant J (2003) 1.46
Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport. Sci Rep (2012) 1.45
Mapping a quantitative trait locus for resistance to bacterial grain rot in rice. Rice (N Y) (2013) 1.45
Genome-wide haplotype changes produced by artificial selection during modern rice breeding in Japan. PLoS One (2012) 1.42
Discovery of genome-wide DNA polymorphisms in a landrace cultivar of Japonica rice by whole-genome sequencing. Plant Cell Physiol (2011) 1.41
Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice. Proc Natl Acad Sci U S A (2008) 1.40
Dro1, a major QTL involved in deep rooting of rice under upland field conditions. J Exp Bot (2011) 1.39
Characterization and functional analysis of three wheat genes with homology to the CONSTANS flowering time gene in transgenic rice. Plant J (2003) 1.37
A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein. Proc Natl Acad Sci U S A (2002) 1.35
Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication. Plant J (2010) 1.35
Isolation of rice genes possibly involved in the photoperiodic control of flowering by a fluorescent differential display method. Plant Cell Physiol (2002) 1.34
Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm. J Exp Bot (2008) 1.32
New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield. Nat Commun (2010) 1.30
A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality. Plant Cell (2010) 1.29
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) (supplement). DNA Res (2002) 1.29
Comparative sequence analyses of the major quantitative trait locus phosphorus uptake 1 (Pup1) reveal a complex genetic structure. Plant Biotechnol J (2009) 1.29
Variation in heading date conceals quantitative trait loci for other traits of importance in breeding selection of rice. Breed Sci (2012) 1.29
SALAD database: a motif-based database of protein annotations for plant comparative genomics. Nucleic Acids Res (2009) 1.29
Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering. Plant J (2011) 1.29
Genome dissection of traits related to domestication in azuki bean (Vigna angularis) and comparison with other warm-season legumes. Ann Bot (2007) 1.27
A natural variant of NAL1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate. Sci Rep (2013) 1.25
The role of casein kinase II in flowering time regulation has diversified during evolution. Plant Physiol (2009) 1.25
Chromosomal regions with quantitative trait loci controlling cadmium concentration in brown rice (Oryza sativa). New Phytol (2005) 1.24
Characterization of the silicon uptake system and molecular mapping of the silicon transporter gene in rice. Plant Physiol (2004) 1.24
Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. J Chromatogr B Analyt Technol Biomed Life Sci (2007) 1.23
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proc Natl Acad Sci U S A (2010) 1.22
Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering. Plant Cell Physiol (2012) 1.19
The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria. Plant J (2007) 1.16
Identification of rice Allene Oxide Cyclase mutants and the function of jasmonate for defence against Magnaporthe oryzae. Plant J (2013) 1.14
A major quantitative trait locus for increasing cadmium-specific concentration in rice grain is located on the short arm of chromosome 7. J Exp Bot (2009) 1.12
Identification of qSOR1, a major rice QTL involved in soil-surface rooting in paddy fields. Theor Appl Genet (2011) 1.11
DNA changes tell us about rice domestication. Curr Opin Plant Biol (2009) 1.10
Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis. Plant J (2012) 1.09
Detection and verification of QTLs associated with heat-induced quality decline of rice (Oryza sativa L.) using recombinant inbred lines and near-isogenic lines. Breed Sci (2013) 1.07
Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L. Mol Genet Genomics (2010) 1.07
A novel kinesin 13 protein regulating rice seed length. Plant Cell Physiol (2010) 1.06
Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field. Plant Cell (2011) 1.05
Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions. Plant Cell Physiol (2012) 1.05
Single-neuron diversity generated by Protocadherin-β cluster in mouse central and peripheral nervous systems. Front Mol Neurosci (2012) 1.04
Fine-mapping of qRL6.1, a major QTL for root length of rice seedlings grown under a wide range of NH4(+) concentrations in hydroponic conditions. Theor Appl Genet (2010) 1.03
Detection of quantitative trait loci controlling pre-harvest sprouting resistance by using backcrossed populations of japonica rice cultivars. Theor Appl Genet (2010) 1.03
Exploring the areas of applicability of whole-genome prediction methods for Asian rice (Oryza sativa L.). Theor Appl Genet (2014) 1.03
Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars. Theor Appl Genet (2011) 1.03
Identification of a novel major quantitative trait locus controlling distribution of Cd between roots and shoots in rice. Plant Cell Physiol (2009) 1.02
The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice. Genes Genet Syst (2010) 1.02