Published in Nucleic Acids Res on October 21, 2014
(Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans. Sci Rep (2016) 0.80
Comparative Genome Analysis Provides Insights into the Pathogenicity of Flavobacterium psychrophilum. PLoS One (2016) 0.77
Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems? mSystems (2016) 0.76
Computational methods for predicting genomic islands in microbial genomes. Comput Struct Biotechnol J (2016) 0.76
Assessment of virulence potential of uncharacterized Enterococcus faecalis strains using pan genomic approach - Identification of pathogen-specific and habitat-specific genes. Sci Rep (2016) 0.75
Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin-producing Escherichia coli strains. Sci Rep (2017) 0.75
BLAT--the BLAST-like alignment tool. Genome Res (2002) 126.78
Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47
BLAST+: architecture and applications. BMC Bioinformatics (2009) 36.53
A new class of genetic element, staphylococcus cassette chromosome mec, encodes methicillin resistance in Staphylococcus aureus. Antimicrob Agents Chemother (2000) 9.84
ARDB--Antibiotic Resistance Genes Database. Nucleic Acids Res (2008) 7.82
Origins and evolution of antibiotic resistance. Microbiol Mol Biol Rev (2010) 7.35
Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol (2004) 6.94
The comprehensive antibiotic resistance database. Antimicrob Agents Chemother (2013) 6.41
Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet (2006) 6.32
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res (2011) 5.79
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res (2011) 4.36
Pathogenicity islands in bacterial pathogenesis. Clin Microbiol Rev (2004) 3.77
Bacterial pathogenomics. Nature (2007) 3.16
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinformatics (2006) 3.15
IslandPath: aiding detection of genomic islands in prokaryotes. Bioinformatics (2003) 3.02
MvirDB--a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. Nucleic Acids Res (2006) 2.76
Evaluation of genomic island predictors using a comparative genomics approach. BMC Bioinformatics (2008) 2.62
The Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plants. Proc Natl Acad Sci U S A (2000) 2.26
Detecting genomic islands using bioinformatics approaches. Nat Rev Microbiol (2010) 2.22
Interactions among strategies associated with bacterial infection: pathogenicity, epidemicity, and antibiotic resistance. Clin Microbiol Rev (2002) 2.20
Detecting pathogenicity islands and anomalous gene clusters by iterative discriminant analysis. FEMS Microbiol Lett (2003) 1.90
Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa. J Bacteriol (2001) 1.85
The majority of genes in the pathogenic Neisseria species are present in non-pathogenic Neisseria lactamica, including those designated as 'virulence genes'. BMC Genomics (2006) 1.77
IslandViewer update: Improved genomic island discovery and visualization. Nucleic Acids Res (2013) 1.76
Molecular and functional analysis indicates a mosaic structure of Salmonella pathogenicity island 2. Mol Microbiol (1999) 1.57
The association of virulence factors with genomic islands. PLoS One (2009) 1.47
BacMet: antibacterial biocide and metal resistance genes database. Nucleic Acids Res (2013) 1.35
A computational approach for identifying pathogenicity islands in prokaryotic genomes. BMC Bioinformatics (2005) 1.31
Towards pathogenomics: a web-based resource for pathogenicity islands. Nucleic Acids Res (2006) 1.24
PIPS: pathogenicity island prediction software. PLoS One (2012) 1.23
Parallel evolution of transcriptome architecture during genome reorganization. Genome Res (2011) 1.14
Evidence for a hybrid genomic island in verocytotoxin-producing Escherichia coli CL3 (serotype O113:H21) containing segments of EDL933 (serotype O157:H7) O islands 122 and 48. Infect Immun (2004) 1.12
Virulence or niche factors: what's in a name? J Bacteriol (2012) 1.05
Antimicrobial resistance islands: resistance gene clusters in Salmonella chromosome and plasmids. Microbes Infect (2006) 1.03
Pathogenomics of mobile genetic elements of toxigenic bacteria. Int J Med Microbiol (2004) 0.97
Identifying pathogenicity islands in bacterial pathogenomics using computational approaches. Pathogens (2014) 0.93
PredictBias: a server for the identification of genomic and pathogenicity islands in prokaryotes. In Silico Biol (2008) 0.90
Genome sequence of Staphylococcus aureus strain 11819-97, an ST80-IV European community-acquired methicillin-resistant isolate. J Bacteriol (2012) 0.90
On detection and assessment of statistical significance of Genomic Islands. BMC Genomics (2008) 0.86
Common and pathogen-specific virulence factors are different in function and structure. Virulence (2013) 0.86