The frequency natural antisense transcript first promotes, then represses, frequency gene expression via facultative heterochromatin.

PubWeight™: 0.83‹?›

🔗 View Article (PMC 4394252)

Published in Proc Natl Acad Sci U S A on March 23, 2015

Authors

Na Li1, Tammy M Joska1, Catherine E Ruesch1, Samuel J Coster1, William J Belden2

Author Affiliations

1: Department of Animal Sciences, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901.
2: Department of Animal Sciences, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901 belden@aesop.rutgers.edu.

Articles cited by this

A histone H3 methyltransferase controls DNA methylation in Neurospora crassa. Nature (2001) 8.27

Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat Rev Genet (2005) 6.87

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci U S A (2006) 6.12

Negative feedback defining a circadian clock: autoregulation of the clock gene frequency. Science (1994) 5.76

Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science (2012) 4.77

Neurospora wc-1 and wc-2: transcription, photoresponses, and the origins of circadian rhythmicity. Science (1997) 4.73

Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa. Nat Genet (2003) 4.56

White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science (2002) 3.85

Alternative initiation of translation and time-specific phosphorylation yield multiple forms of the essential clock protein FREQUENCY. Cell (1997) 3.32

The PAS protein VIVID defines a clock-associated feedback loop that represses light input, modulates gating, and regulates clock resetting. Cell (2001) 2.69

WC-2 mediates WC-1-FRQ interaction within the PAS protein-linked circadian feedback loop of Neurospora. EMBO J (2001) 2.26

Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi. Mol Cell (2010) 2.23

Role of a white collar-1-white collar-2 complex in blue-light signal transduction. EMBO J (1999) 2.20

VIVID is a flavoprotein and serves as a fungal blue light photoreceptor for photoadaptation. EMBO J (2003) 2.10

Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY. Proc Natl Acad Sci U S A (2003) 2.09

HP1 is essential for DNA methylation in neurospora. Mol Cell (2004) 2.08

Regulation of the Neurospora circadian clock by an RNA helicase. Genes Dev (2004) 2.07

dim-2 encodes a DNA methyltransferase responsible for all known cytosine methylation in Neurospora. EMBO J (2001) 1.91

The Neurospora crassa circadian clock. Adv Genet (2007) 1.86

Circadian conformational change of the Neurospora clock protein FREQUENCY triggered by clustered hyperphosphorylation of a basic domain. Mol Cell (2011) 1.85

Execution of the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatin-remodeling enzyme CLOCKSWITCH. Mol Cell (2007) 1.85

Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock. Mol Cell (2009) 1.80

Circadian oscillations of protein-coding and regulatory RNAs in a highly dynamic mammalian liver epigenome. Cell Metab (2012) 1.77

RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation. Science (2011) 1.76

Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock. Eukaryot Cell (2007) 1.75

Role for antisense RNA in regulating circadian clock function in Neurospora crassa. Nature (2003) 1.70

DNA methylation is independent of RNA interference in Neurospora. Science (2004) 1.66

The band mutation in Neurospora crassa is a dominant allele of ras-1 implicating RAS signaling in circadian output. Genes Dev (2007) 1.65

Direct interaction between DNA methyltransferase DIM-2 and HP1 is required for DNA methylation in Neurospora crassa. Mol Cell Biol (2008) 1.58

Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora. EMBO J (2009) 1.58

Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex. Eukaryot Cell (2010) 1.52

Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora. Proc Natl Acad Sci U S A (2010) 1.36

Photoadaptation in Neurospora by competitive interaction of activating and inhibitory LOV domains. Cell (2010) 1.35

Interlocked feedback loops of the circadian clock of Neurospora crassa. Mol Microbiol (2008) 1.33

Setting the pace of the Neurospora circadian clock by multiple independent FRQ phosphorylation events. Proc Natl Acad Sci U S A (2009) 1.29

Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus. Genes Dev (2008) 1.22

DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC. PLoS Genet (2010) 1.21

CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency. PLoS Genet (2011) 1.16

VIVID interacts with the WHITE COLLAR complex and FREQUENCY-interacting RNA helicase to alter light and clock responses in Neurospora. Proc Natl Acad Sci U S A (2010) 1.13

Temporal orchestration of repressive chromatin modifiers by circadian clock Period complexes. Nat Struct Mol Biol (2014) 1.05

High-throughput construction of gene deletion cassettes for generation of Neurospora crassa knockout strains. Methods Mol Biol (2010) 1.03

Methylation of histone H3 on lysine 4 by the lysine methyltransferase SET1 protein is needed for normal clock gene expression. J Biol Chem (2013) 1.01

The circadian epigenome: how metabolism talks to chromatin remodeling. Curr Opin Cell Biol (2013) 0.98

Fungal functional genomics: tunable knockout-knock-in expression and tagging strategies. Eukaryot Cell (2009) 0.97

Transcriptional interference by antisense RNA is required for circadian clock function. Nature (2014) 0.92

Convergent transcription induces dynamic DNA methylation at disiRNA loci. PLoS Genet (2013) 0.88

Natural antisense transcripts and long non-coding RNA in Neurospora crassa. PLoS One (2014) 0.82

The histone H3 lysine 9 methyltransferase DIM-5 modifies chromatin at frequency and represses light-activated gene expression. G3 (Bethesda) (2014) 0.78