Digital signaling decouples activation probability and population heterogeneity.

PubWeight™: 0.82‹?›

🔗 View Article (PMC 4608393)

Published in Elife on October 21, 2015

Authors

Ryan A Kellogg1, Chengzhe Tian2, Tomasz Lipniacki3, Stephen R Quake4, Savaş Tay1,5

Author Affiliations

1: Department of Biosystems Science and Engineering, Eidgenössische Technische Hochschule Zürich, Basel, Switzerland.
2: Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark.
3: Institute of Fundamental Technological Research, Polish Academy of Sciences, Warsaw, Poland.
4: Department of Bioengineering, Howard Hughes Medical Institute, Stanford University, Stanford, United States.
5: Institute for Molecular Engineering, University of Chicago, Chicago, United States.

Articles cited by this

The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors. Nat Immunol (2010) 24.08

Shared principles in NF-kappaB signaling. Cell (2008) 20.96

The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation. Science (2002) 13.86

The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. Science (1998) 10.83

Oscillations in NF-kappaB signaling control the dynamics of gene expression. Science (2004) 8.44

LPS/TLR4 signal transduction pathway. Cytokine (2008) 6.60

Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing. Nature (2010) 5.27

The duration of antigenic stimulation determines the fate of naive and effector T cells. Immunity (1998) 5.20

Stimulus specificity of gene expression programs determined by temporal control of IKK activity. Science (2005) 5.14

Achieving stability of lipopolysaccharide-induced NF-kappaB activation. Science (2005) 4.83

Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate. Nat Cell Biol (2007) 4.75

Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling. Nature (2010) 4.61

Modeling T cell antigen discrimination based on feedback control of digital ERK responses. PLoS Biol (2005) 4.26

Pulsatile stimulation determines timing and specificity of NF-kappaB-dependent transcription. Science (2009) 4.14

The history of Toll-like receptors - redefining innate immunity. Nat Rev Immunol (2013) 3.59

Population context determines cell-to-cell variability in endocytosis and virus infection. Nature (2009) 3.37

p53 dynamics control cell fate. Science (2012) 3.30

Versatile, fully automated, microfluidic cell culture system. Anal Chem (2007) 3.19

Signaling in innate immunity and inflammation. Cold Spring Harb Perspect Biol (2012) 3.11

CD14 controls the LPS-induced endocytosis of Toll-like receptor 4. Cell (2011) 3.00

Bistability in the JNK cascade. Curr Biol (2001) 2.93

E2 interaction and dimerization in the crystal structure of TRAF6. Nat Struct Mol Biol (2009) 2.79

Cell fate decisions are specified by the dynamic ERK interactome. Nat Cell Biol (2009) 2.23

The cyclic gene Hes1 contributes to diverse differentiation responses of embryonic stem cells. Genes Dev (2009) 2.19

A noisy paracrine signal determines the cellular NF-kappaB response to lipopolysaccharide. Sci Signal (2009) 1.91

The scaffold protein Ste5 directly controls a switch-like mating decision in yeast. Nature (2010) 1.90

Understanding NF-kappaB signaling via mathematical modeling. Mol Syst Biol (2008) 1.79

Population robustness arising from cellular heterogeneity. Proc Natl Acad Sci U S A (2010) 1.66

NF-κB: roles and regulation in different CD4(+) T-cell subsets. Immunol Rev (2013) 1.45

The dynamics of signaling as a pharmacological target. Cell (2013) 1.45

Single TNFalpha trimers mediating NF-kappaB activation: stochastic robustness of NF-kappaB signaling. BMC Bioinformatics (2007) 1.44

Physiological levels of TNFalpha stimulation induce stochastic dynamics of NF-kappaB responses in single living cells. J Cell Sci (2010) 1.38

Systems biology. Accurate information transmission through dynamic biochemical signaling networks. Science (2014) 1.36

Cutting edge: TCR ligation triggers digital activation of NF-kappaB. J Immunol (2010) 1.30

CD14-dependent internalization of bacterial lipopolysaccharide (LPS) is strongly influenced by LPS aggregation but not by cellular responses to LPS. J Immunol (1998) 1.21

NF-κB control of T cell development. Nat Immunol (2014) 1.19

Distinct influences of peptide-MHC quality and quantity on in vivo T-cell responses. Proc Natl Acad Sci U S A (2012) 1.16

Robust network topologies for generating switch-like cellular responses. PLoS Comput Biol (2011) 1.12

The duration of T cell stimulation is a critical determinant of cell fate and plasticity. Sci Signal (2013) 1.12

Single-cell imaging of caspase-1 dynamics reveals an all-or-none inflammasome signaling response. Cell Rep (2014) 1.10

Data-driven modeling reconciles kinetics of ERK phosphorylation, localization, and activity states. Mol Syst Biol (2014) 1.09

Positive feedback within a kinase signaling complex functions as a switch mechanism for NF-κB activation. Science (2014) 1.05

Noise facilitates transcriptional control under dynamic inputs. Cell (2015) 1.01

Reciprocal encoding of signal intensity and duration in a glucose-sensing circuit. Cell (2014) 1.01

Tunable signal processing through a kinase control cycle: the IKK signaling node. Biophys J (2013) 0.94

High-throughput microfluidic single-cell analysis pipeline for studies of signaling dynamics. Nat Protoc (2014) 0.90

Spontaneous NF-κB activation by autocrine TNFα signaling: a computational analysis. PLoS One (2013) 0.89

Duration of calcineurin and Erk signals regulates CD4/CD8 lineage commitment of thymocytes. Cell Immunol (2002) 0.89

Signalosomes as Therapeutic Targets. Prog Pediatr Cardiol (2008) 0.88

Spontaneous preterm labor is associated with an increase in the proinflammatory signal transducer TLR4 receptor on maternal blood monocytes. BMC Pregnancy Childbirth (2010) 0.87

Microfluidic single-cell analysis for systems immunology. Lab Chip (2014) 0.84

Single-cell variation leads to population invariance in NF-κB signaling dynamics. Mol Biol Cell (2014) 0.84

Spatial gradients in kinase cascade regulation. IET Syst Biol (2010) 0.78