Published in RNA on December 10, 2015
ALS and FTD: an epigenetic perspective. Acta Neuropathol (2016) 0.81
Initial sequencing and analysis of the human genome. Nature (2001) 212.86
Chromatin modifications and their function. Cell (2007) 55.98
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature (2009) 35.48
Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res (2005) 23.41
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A (2009) 20.66
Landscape of transcription in human cells. Nature (2012) 20.18
GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res (2012) 19.19
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res (2012) 15.41
Ensembl 2012. Nucleic Acids Res (2011) 14.55
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. Genome Res (2008) 12.72
Alu repeats and human genomic diversity. Nat Rev Genet (2002) 12.40
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell (2010) 12.27
Genome regulation by long noncoding RNAs. Annu Rev Biochem (2012) 11.70
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell (2010) 8.66
Specific expression of long noncoding RNAs in the mouse brain. Proc Natl Acad Sci U S A (2008) 7.19
Alu-containing exons are alternatively spliced. Genome Res (2002) 5.45
lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements. Nature (2011) 5.42
lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Res (2010) 4.49
Polycomb group proteins: navigators of lineage pathways led astray in cancer. Nat Rev Cancer (2009) 4.40
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat. Nature (2012) 3.08
Interpreting noncoding genetic variation in complex traits and human disease. Nat Biotechnol (2012) 3.01
The evolution of lncRNA repertoires and expression patterns in tetrapods. Nature (2014) 2.93
A long noncoding RNA mediates both activation and repression of immune response genes. Science (2013) 2.85
Alu sequences in the coding regions of mRNA: a source of protein variability. Trends Genet (1994) 2.49
Functional diversity of the hnRNPs: past, present and perspectives. Biochem J (2010) 2.29
The DNA sequence and biology of human chromosome 19. Nature (2004) 2.29
Transposable elements reveal a stem cell-specific class of long noncoding RNAs. Genome Biol (2012) 2.22
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet (2013) 2.07
The frequency and position of Alu repeats in cDNAs, as determined by database searching. Genomics (1995) 1.87
Alu elements: know the SINEs. Genome Biol (2011) 1.81
Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals. Genome Res (2014) 1.69
Alu RNA secondary structure consists of two independent 7 SL RNA-like folding units. J Biol Chem (1991) 1.60
Human disease-associated genetic variation impacts large intergenic non-coding RNA expression. PLoS Genet (2013) 1.59
Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes. Nucleic Acids Res (2008) 1.33
Staufen1 senses overall transcript secondary structure to regulate translation. Nat Struct Mol Biol (2013) 1.19
Using Alu elements as polyadenylation sites: A case of retroposon exaptation. Mol Biol Evol (2008) 1.16
Monomeric scAlu and nascent dimeric Alu RNAs induced by adenovirus are assembled into SRP9/14-containing RNPs in HeLa cells. Nucleic Acids Res (1996) 1.14
Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong? Mol Biol Evol (2013) 1.11
The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs. RNA (2014) 1.06
The decline in human Alu retroposition was accompanied by an asymmetric decrease in SRP9/14 binding to dimeric Alu RNA and increased expression of small cytoplasmic Alu RNA. Mol Cell Biol (1997) 1.03
Multiple Roles of Alu-Related Noncoding RNAs. Prog Mol Subcell Biol (2011) 1.02
Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes. Hum Mol Genet (2009) 0.99
Alu's dimeric consensus sequence destabilizes its transcripts. Gene (2004) 0.90
ADAR-mediated RNA editing in non-coding RNA sequences. Sci China Life Sci (2013) 0.80