Published in BMC Bioinformatics on December 16, 2015
The Protein Data Bank. Nucleic Acids Res (2000) 187.10
Prediction of protein antigenic determinants from amino acid sequences. Proc Natl Acad Sci U S A (1981) 32.98
Principles of protein-protein interactions. Proc Natl Acad Sci U S A (1996) 14.51
The immune epitope database 2.0. Nucleic Acids Res (2009) 6.07
Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. J Virol (1985) 5.73
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry (1986) 5.12
The structure of protein-protein recognition sites. J Biol Chem (1990) 4.55
A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett (1990) 4.49
THE NATURAL-SELECTION THEORY OF ANTIBODY FORMATION. Proc Natl Acad Sci U S A (1955) 4.24
A generic method for assignment of reliability scores applied to solvent accessibility predictions. BMC Struct Biol (2009) 3.56
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins (2006) 3.15
Benchmarking B cell epitope prediction: underperformance of existing methods. Protein Sci (2004) 2.70
Predicting linear B-cell epitopes using string kernels. J Mol Recognit (2008) 2.47
AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data. Immunome Res (2005) 2.40
Bcipep: a database of B-cell epitopes. BMC Genomics (2005) 2.27
Antibody-protein interactions: benchmark datasets and prediction tools evaluation. BMC Struct Biol (2007) 2.14
Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids (2007) 2.06
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. J Mol Recognit (2007) 2.02
Correlation between the location of antigenic sites and the prediction of turns in proteins. Immunol Lett (1993) 1.65
Computational characterization of B-cell epitopes. Mol Immunol (2007) 1.60
The coming of age of artificial intelligence in medicine. Artif Intell Med (2008) 1.60
Regulation of B-cell signal transduction by adaptor proteins. Nat Rev Immunol (2002) 1.56
Phage display technology: clinical applications and recent innovations. Clin Biochem (2002) 1.37
Improved method for linear B-cell epitope prediction using antigen's primary sequence. PLoS One (2013) 1.34
Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach. Phys Biol (2005) 1.26
Modern subunit vaccines: development, components, and research opportunities. ChemMedChem (2013) 1.22
SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction. BMC Genomics (2010) 1.12
PREDITOP: a program for antigenicity prediction. J Mol Graph (1993) 1.10
Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification. J Biomed Biotechnol (2011) 1.05
The dynamics of proteins. Sci Am (1986) 1.03
BEST: improved prediction of B-cell epitopes from antigen sequences. PLoS One (2012) 0.99
The indistinguishability of epitopes from protein surface is explained by the distinct binding preferences of each of the six antigen-binding loops. Protein Eng Des Sel (2013) 0.92
Prediction of linear B-cell epitopes. Methods Mol Biol (2009) 0.89
Antibodies in human infectious disease. Immunol Res (2000) 0.88
Epitope predictions indicate the presence of two distinct types of epitope-antibody-reactivities determined by epitope profiling of intravenous immunoglobulins. PLoS One (2013) 0.87
An integrated approach to epitope analysis I: Dimensional reduction, visualization and prediction of MHC binding using amino acid principal components and regression approaches. Immunome Res (2010) 0.86
An analysis of B-cell epitope discontinuity. Mol Immunol (2012) 0.85
Predicting linear B-cell epitopes by using sequence-derived structural and physicochemical features. Int J Data Min Bioinform (2012) 0.84
Computational prediction of heme-binding residues by exploiting residue interaction network. PLoS One (2011) 0.83
B-cell epitope prediction through a graph model. BMC Bioinformatics (2012) 0.81
[Linear B-cell epitope prediction]. Mol Biol (Mosk) (2009) 0.78
Prediction of promiscuous epitopes in the e6 protein of three high risk human papilloma viruses: a computational approach. Asian Pac J Cancer Prev (2013) 0.77
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism. Science (2012) 2.38
A rat homologue of CED-6 is expressed in neurons and interacts with clathrin. Brain Res (2006) 0.85
Identification of new sphingomyelinases D in pathogenic fungi and other pathogenic organisms. PLoS One (2013) 0.84
BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks. Bioinformatics (2010) 0.83
Cardiotoxic effects of Loxosceles intermedia spider venom and the recombinant venom toxin rLiD1. Toxicon (2010) 0.79
Computing biological functions using BioPsi, a formal description of biological processes based on elementary bricks of actions. Bioinformatics (2010) 0.79
Biochemical characterization and molecular cloning of a plasminogen activator proteinase (LV-PA) from bushmaster snake venom. Biochim Biophys Acta (2006) 0.77
Elementary flux modes analysis of functional domain networks allows a better metabolic pathway interpretation. PLoS One (2013) 0.75