Classification epitopes in groups based on their protein family.

PubWeight™: 0.75‹?›

🔗 View Article (PMID 26696329)

Published in BMC Bioinformatics on December 16, 2015

Authors

Edgar Kozlova, Benjamin Viart, Ricardo de Avila, Liza Felicori, Carlos Chavez-Olortegui

Articles cited by this

The Protein Data Bank. Nucleic Acids Res (2000) 187.10

Prediction of protein antigenic determinants from amino acid sequences. Proc Natl Acad Sci U S A (1981) 32.98

Principles of protein-protein interactions. Proc Natl Acad Sci U S A (1996) 14.51

The immune epitope database 2.0. Nucleic Acids Res (2009) 6.07

Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. J Virol (1985) 5.73

New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry (1986) 5.12

The structure of protein-protein recognition sites. J Biol Chem (1990) 4.55

A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett (1990) 4.49

THE NATURAL-SELECTION THEORY OF ANTIBODY FORMATION. Proc Natl Acad Sci U S A (1955) 4.24

A generic method for assignment of reliability scores applied to solvent accessibility predictions. BMC Struct Biol (2009) 3.56

Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins (2006) 3.15

Benchmarking B cell epitope prediction: underperformance of existing methods. Protein Sci (2004) 2.70

Predicting linear B-cell epitopes using string kernels. J Mol Recognit (2008) 2.47

AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data. Immunome Res (2005) 2.40

Bcipep: a database of B-cell epitopes. BMC Genomics (2005) 2.27

Antibody-protein interactions: benchmark datasets and prediction tools evaluation. BMC Struct Biol (2007) 2.14

Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids (2007) 2.06

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. J Mol Recognit (2007) 2.02

Correlation between the location of antigenic sites and the prediction of turns in proteins. Immunol Lett (1993) 1.65

Computational characterization of B-cell epitopes. Mol Immunol (2007) 1.60

The coming of age of artificial intelligence in medicine. Artif Intell Med (2008) 1.60

Regulation of B-cell signal transduction by adaptor proteins. Nat Rev Immunol (2002) 1.56

Phage display technology: clinical applications and recent innovations. Clin Biochem (2002) 1.37

Improved method for linear B-cell epitope prediction using antigen's primary sequence. PLoS One (2013) 1.34

Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach. Phys Biol (2005) 1.26

Modern subunit vaccines: development, components, and research opportunities. ChemMedChem (2013) 1.22

SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction. BMC Genomics (2010) 1.12

PREDITOP: a program for antigenicity prediction. J Mol Graph (1993) 1.10

Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification. J Biomed Biotechnol (2011) 1.05

The dynamics of proteins. Sci Am (1986) 1.03

BEST: improved prediction of B-cell epitopes from antigen sequences. PLoS One (2012) 0.99

The indistinguishability of epitopes from protein surface is explained by the distinct binding preferences of each of the six antigen-binding loops. Protein Eng Des Sel (2013) 0.92

Prediction of linear B-cell epitopes. Methods Mol Biol (2009) 0.89

Antibodies in human infectious disease. Immunol Res (2000) 0.88

Epitope predictions indicate the presence of two distinct types of epitope-antibody-reactivities determined by epitope profiling of intravenous immunoglobulins. PLoS One (2013) 0.87

An integrated approach to epitope analysis I: Dimensional reduction, visualization and prediction of MHC binding using amino acid principal components and regression approaches. Immunome Res (2010) 0.86

An analysis of B-cell epitope discontinuity. Mol Immunol (2012) 0.85

Predicting linear B-cell epitopes by using sequence-derived structural and physicochemical features. Int J Data Min Bioinform (2012) 0.84

Computational prediction of heme-binding residues by exploiting residue interaction network. PLoS One (2011) 0.83

B-cell epitope prediction through a graph model. BMC Bioinformatics (2012) 0.81

[Linear B-cell epitope prediction]. Mol Biol (Mosk) (2009) 0.78

Prediction of promiscuous epitopes in the e6 protein of three high risk human papilloma viruses: a computational approach. Asian Pac J Cancer Prev (2013) 0.77