Published in Plant Physiol on December 23, 2015
The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability. Plant Cell (2016) 0.81
Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants. Int J Mol Sci (2017) 0.75
Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana. BMC Genomics (2017) 0.75
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol (2002) 82.19
Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett (2003) 18.34
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol (2007) 16.15
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol (2005) 15.10
The SR protein family of splicing factors: master regulators of gene expression. Biochem J (2009) 5.98
Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8. Proteins (2009) 4.27
Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity. J Cell Biol (1997) 3.95
RNA recognition motifs: boring? Not quite. Curr Opin Struct Biol (2008) 3.78
Making optimal use of empirical energy functions: force-field parameterization in crystal space. Proteins (2004) 3.63
SR splicing factors serve as adapter proteins for TAP-dependent mRNA export. Mol Cell (2003) 3.61
Functional analysis of pre-mRNA splicing factor SF2/ASF structural domains. EMBO J (1993) 3.51
Alternative splicing: a pivotal step between eukaryotic transcription and translation. Nat Rev Mol Cell Biol (2013) 3.33
Integration of PCR fragments at any specific site within cloning vectors without the use of restriction enzymes and DNA ligase. Biotechniques (2001) 3.31
Arginine-serine-rich domains bound at splicing enhancers contact the branchpoint to promote prespliceosome assembly. Mol Cell (2004) 2.90
SR proteins in vertical integration of gene expression from transcription to RNA processing to translation. Mol Cell (2009) 2.73
The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3. Nat Struct Mol Biol (2004) 2.65
Zinc-dependent global transcriptional control, transcriptional deregulation, and higher gene copy number for genes in metal homeostasis of the hyperaccumulator Arabidopsis halleri. Plant Physiol (2006) 2.09
Nuclear export and retention signals in the RS domain of SR proteins. Mol Cell Biol (2002) 2.04
The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus. Cell (2012) 1.88
atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes. Genes Dev (1999) 1.82
Transportin-SR2 mediates nuclear import of phosphorylated SR proteins. Proc Natl Acad Sci U S A (2001) 1.80
Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J (2006) 1.78
A rational nomenclature for serine/arginine-rich protein splicing factors (SR proteins). Genes Dev (2010) 1.77
High throughput identification of potential Arabidopsis mitogen-activated protein kinases substrates. Mol Cell Proteomics (2005) 1.75
Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin. Plant J (2009) 1.73
Hypophosphorylated ASF/SF2 binds TAP and is present in messenger ribonucleoproteins. J Biol Chem (2004) 1.53
Structural insights into the exon junction complex. Curr Opin Struct Biol (2008) 1.44
RRM-RNA recognition: NMR or crystallography…and new findings. Curr Opin Struct Biol (2012) 1.38
Creating random mutagenesis libraries using megaprimer PCR of whole plasmid. Biotechniques (2002) 1.37
Crystal structure of the Drosophila Mago nashi-Y14 complex. Genes Dev (2003) 1.36
Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. Nucleic Acids Res (2006) 1.34
Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors. J Biol Chem (2002) 1.30
Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development. Plant Physiol (2009) 1.30
Structural and functional analysis of RNA and TAP binding to SF2/ASF. EMBO Rep (2007) 1.28
Nucleo-cytoplasmic partitioning of proteins in plants: implications for the regulation of environmental and developmental signalling. Curr Genet (2003) 1.28
SKIP is a component of the spliceosome linking alternative splicing and the circadian clock in Arabidopsis. Plant Cell (2012) 1.21
The integral membrane FtsW protein and peptidoglycan synthase PBP3 form a subcomplex in Escherichia coli. Microbiology (2010) 1.18
Tissue-specific expression and dynamic organization of SR splicing factors in Arabidopsis. Mol Biol Cell (2004) 1.18
LocNES: a computational tool for locating classical NESs in CRM1 cargo proteins. Bioinformatics (2014) 1.17
A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions? Biochem Soc Trans (2004) 1.17
Plant serine/arginine-rich proteins and their role in pre-mRNA splicing. Trends Plant Sci (2004) 1.17
Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA Splicing. J Biol Chem (2004) 1.14
Localization and dynamics of nuclear speckles in plants. Plant Physiol (2011) 1.09
Postage for the messenger: designating routes for nuclear mRNA export. Trends Cell Biol (2013) 1.08
Partitioning RS domain phosphorylation in an SR protein through the CLK and SRPK protein kinases. J Mol Biol (2013) 1.08
Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants. Plant Cell (2010) 1.07
Capturing directed molecular motion in the nuclear pore complex of live cells. Proc Natl Acad Sci U S A (2012) 1.07
The plant-specific SR45 protein negatively regulates glucose and ABA signaling during early seedling development in Arabidopsis. Plant Physiol (2010) 1.04
mRNA export and gene expression: the SAGA-TREX-2 connection. Biochim Biophys Acta (2011) 1.04
Plant SR proteins and their functions. Curr Top Microbiol Immunol (2008) 1.04
The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis. EMBO J (2013) 1.04
Functional distribution and dynamics of Arabidopsis SR splicing factors in living plant cells. Plant J (2005) 1.02
Nucleocytoplasmic shuttling of heterodimeric splicing factor U2AF. J Biol Chem (2000) 1.00
mRNA export and the TREX complex. Biochim Biophys Acta (2011) 1.00
Phosphorylation-dependent and -independent nuclear import of RS domain-containing splicing factors and regulators. J Biol Chem (2003) 0.99
Isolated pseudo-RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition. Proc Natl Acad Sci U S A (2013) 0.98
Structural basis for nuclear import of splicing factors by human Transportin 3. Proc Natl Acad Sci U S A (2014) 0.98
Transportin-SR is required for proper splicing of resistance genes and plant immunity. PLoS Genet (2011) 0.97
Insights into nuclear organization in plants as revealed by the dynamic distribution of Arabidopsis SR splicing factors. Plant Cell (2006) 0.96
The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis. Epigenetics (2012) 0.96
Enriching the pore: splendid complexity from humble origins. Traffic (2014) 0.94
Single-molecule studies of nucleocytoplasmic transport: from one dimension to three dimensions. Integr Biol (Camb) (2011) 0.94
Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing. Plant J (2012) 0.90
Regulation of gene expression programmes by serine-arginine rich splicing factors. Semin Cell Dev Biol (2014) 0.89
Co-localisation studies of Arabidopsis SR splicing factors reveal different types of speckles in plant cell nuclei. Exp Cell Res (2008) 0.89
In vivo analysis of the functional domains of the Drosophila splicing regulator RBP1. Proc Natl Acad Sci U S A (1997) 0.89
Structural basis for binding the TREX2 complex to nuclear pores, GAL1 localisation and mRNA export. Nucleic Acids Res (2014) 0.88
Comparative genomics of proteins involved in RNA nucleocytoplasmic export. BMC Evol Biol (2011) 0.87
Dynamics of the plant nuclear envelope and nuclear pore. Plant Physiol (2011) 0.86
Dynamic nucleocytoplasmic shuttling of an Arabidopsis SR splicing factor: role of the RNA-binding domains. Plant Physiol (2010) 0.85
Functional insights of nucleocytoplasmic transport in plants. Front Plant Sci (2014) 0.85
mRNA export and sumoylation-Lessons from plants. Biochim Biophys Acta (2012) 0.83
A single ancient origin for prototypical serine/arginine-rich splicing factors. Plant Physiol (2011) 0.83
Phosphothreonine 218 is required for the function of SR45.1 in regulating flower petal development in Arabidopsis. Plant Signal Behav (2014) 0.82
mRNA export: threading the needle. Front Plant Sci (2013) 0.82
HYPER RECOMBINATION1 of the THO/TREX complex plays a role in controlling transcription of the REVERSION-TO-ETHYLENE SENSITIVITY1 gene in Arabidopsis. PLoS Genet (2015) 0.82