Published in Epigenetics on January 01, 2012
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Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance. Cell (2013) 1.19
The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis. EMBO J (2013) 1.04
DNA methylation and expression of the EgDEF1 gene and neighboring retrotransposons in mantled somaclonal variants of oil palm. PLoS One (2014) 0.91
A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis. PLoS Genet (2013) 0.91
The proper splicing of RNAi factors is critical for pericentric heterochromatin assembly in fission yeast. PLoS Genet (2014) 0.85
Transcriptome-Wide Identification of RNA Targets of Arabidopsis SERINE/ARGININE-RICH45 Uncovers the Unexpected Roles of This RNA Binding Protein in RNA Processing. Plant Cell (2015) 0.84
The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs. Nucleic Acids Res (2013) 0.83
Phosphothreonine 218 is required for the function of SR45.1 in regulating flower petal development in Arabidopsis. Plant Signal Behav (2014) 0.82
The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability. Plant Cell (2016) 0.81
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The spliceosome as a transposon sensor. RNA Biol (2013) 0.79
A systematic genetic screen identifies new factors influencing centromeric heterochromatin integrity in fission yeast. Genome Biol (2014) 0.77
A Novel Epigenetic Silencing Pathway Involving the Highly Conserved 5'-3' Exoribonuclease Dhp1/Rat1/Xrn2 in Schizosaccharomyces pombe. PLoS Genet (2016) 0.77
RNA Binding Proteins RZ-1B and RZ-1C Play Critical Roles in Regulating Pre-mRNA Splicing and Gene Expression during Development in Arabidopsis. Plant Cell (2015) 0.77
Dynamic Distribution and Interaction of the Arabidopsis SRSF1 Subfamily Splicing Factors. Plant Physiol (2015) 0.76
Depletion of Arabidopsis SC35 and SC35-like serine/arginine-rich proteins affects the transcription and splicing of a subset of genes. PLoS Genet (2017) 0.75
RNA Splicing Factors and RNA-Directed DNA Methylation. Biology (Basel) (2014) 0.75
Alternative Splicing in Plant Genes: A Means of Regulating the Environmental Fitness of Plants. Int J Mol Sci (2017) 0.75
Emerging roles of RNA processing factors in regulating long non-coding RNAs. RNA Biol (2014) 0.75
Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana. BMC Genomics (2017) 0.75
Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet (2010) 15.70
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet (2006) 5.81
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell (2008) 5.78
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci U S A (2002) 5.49
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol (2002) 5.47
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell (2006) 5.22
RNA silencing genes control de novo DNA methylation. Science (2004) 5.11
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol (2003) 4.27
The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene. Mol Cell (2000) 4.16
Two-step recruitment of RNA-directed DNA methylation to tandem repeats. PLoS Biol (2006) 3.09
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2008) 2.74
Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis. Genes Dev (2009) 2.30
Small RNA-mediated chromatin silencing directed to the 3' region of the Arabidopsis gene encoding the developmental regulator, FLC. Proc Natl Acad Sci U S A (2007) 1.67
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet (2011) 1.61
IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol (2009) 1.59
Regulation of plant developmental processes by a novel splicing factor. PLoS One (2007) 1.34
Vernalization: a model for investigating epigenetics and eukaryotic gene regulation in plants. Biochim Biophys Acta (2007) 1.30
The downregulation of FLOWERING LOCUS C (FLC) expression in plants with low levels of DNA methylation and by vernalization occurs by distinct mechanisms. Plant J (2005) 1.30
Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics (2011) 1.18
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature (2008) 26.78
Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet (2010) 15.70
Genetic and functional diversification of small RNA pathways in plants. PLoS Biol (2004) 12.21
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science (2003) 9.54
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature (2002) 9.51
Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency. Nature (2010) 8.84
UHRF1 plays a role in maintaining DNA methylation in mammalian cells. Science (2007) 7.90
Criteria for annotation of plant MicroRNAs. Plant Cell (2008) 7.49
Epigenetic inheritance in plants. Nature (2007) 7.40
Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci U S A (2010) 7.30
Small interfering RNA-induced transcriptional gene silencing in human cells. Science (2004) 7.29
Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet (2005) 6.39
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet (2006) 5.81
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci U S A (2002) 5.49
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol (2002) 5.47
Relationship between nucleosome positioning and DNA methylation. Nature (2010) 5.27
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell (2006) 5.22
Epigenetic reprogramming in plant and animal development. Science (2010) 5.18
RNA silencing genes control de novo DNA methylation. Science (2004) 5.11
One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science (2003) 5.00
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell (2006) 4.82
DICER-LIKE1: blind men and elephants in Arabidopsis development. Trends Plant Sci (2002) 4.72
DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis. Cell (2002) 4.31
Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol (2007) 4.30
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol (2003) 4.27
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant. Genome Res (2006) 4.08
Applications of DNA tiling arrays for whole-genome analysis. Genomics (2005) 3.94
Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science (2006) 3.87
Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev (2007) 3.75
The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol (2007) 3.70
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol (2005) 3.54
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr Biol (2004) 3.54
Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J (2004) 3.51
DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J (2002) 3.50
5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biol (2011) 3.48
RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis. PLoS Genet (2006) 3.41
The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature (2008) 3.28
Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr Biol (2003) 3.11
Two-step recruitment of RNA-directed DNA methylation to tandem repeats. PLoS Biol (2006) 3.09
Role of RNA polymerase IV in plant small RNA metabolism. Proc Natl Acad Sci U S A (2007) 3.05
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell (2013) 3.02
Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma (2004) 3.00
Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol (2009) 2.86
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One (2008) 2.69
Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res (2004) 2.28
Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell (2012) 2.19
Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells. Proc Natl Acad Sci U S A (2009) 2.18
Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. Genes Dev (2008) 2.16
Substrate specificity and kinetic mechanism of mammalian G9a histone H3 methyltransferase. J Biol Chem (2004) 2.09
LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci U S A (2006) 2.08
DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons. Nat Struct Mol Biol (2012) 2.07
A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Curr Biol (2010) 1.99
MORC family ATPases required for heterochromatin condensation and gene silencing. Science (2012) 1.97
The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nat Struct Mol Biol (2007) 1.93
ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nat Struct Mol Biol (2009) 1.85
A unified phylogeny-based nomenclature for histone variants. Epigenetics Chromatin (2012) 1.82
Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature (2013) 1.82
UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells. Nucleic Acids Res (2008) 1.80
Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes. J Biol Chem (2011) 1.80
DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees. Proc Natl Acad Sci U S A (2012) 1.65
Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature (2010) 1.63
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet (2011) 1.61
IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol (2009) 1.59
SRA-domain proteins required for DRM2-mediated de novo DNA methylation. PLoS Genet (2008) 1.57
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biol (2005) 1.55
Distinct roles of the methylcytosine oxidases Tet1 and Tet2 in mouse embryonic stem cells. Proc Natl Acad Sci U S A (2014) 1.50
RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee. Proc Natl Acad Sci U S A (2013) 1.49
Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. PLoS Genet (2012) 1.48
Plants regenerated from tissue culture contain stable epigenome changes in rice. Elife (2013) 1.48
Epigenetic modifications in plants: an evolutionary perspective. Curr Opin Plant Biol (2011) 1.45
A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev (2011) 1.43
Stage-specific roles for tet1 and tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell (2013) 1.40
Transcriptome and methylome interactions in rice hybrids. Proc Natl Acad Sci U S A (2012) 1.39
Catalytic properties and kinetic mechanism of human recombinant Lys-9 histone H3 methyltransferase SUV39H1: participation of the chromodomain in enzymatic catalysis. Biochemistry (2006) 1.34
Dynamic regulation of ARGONAUTE4 within multiple nuclear bodies in Arabidopsis thaliana. PLoS Genet (2008) 1.30
Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2012) 1.27
The impact of Arabidopsis on human health: diversifying our portfolio. Cell (2008) 1.27
Determining DNA methylation profiles using sequencing. Methods Mol Biol (2011) 1.26
A metastable DWARF1 epigenetic mutant affecting plant stature in rice. Proc Natl Acad Sci U S A (2009) 1.26
Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks. Nat Struct Mol Biol (2011) 1.22
Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics (2011) 1.18
SET7/9 mediated methylation of non-histone proteins in mammalian cells. Epigenetics (2009) 1.16
Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. EMBO Rep (2010) 1.14
The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet (2010) 1.12
INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A (2012) 1.11
Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation. Proc Natl Acad Sci U S A (2012) 1.10
Accurate sodium bisulfite sequencing in plants. Epigenetics (2010) 1.07
DDM1 binds Arabidopsis methyl-CpG binding domain proteins and affects their subnuclear localization. Plant Cell (2005) 1.06
DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis. PLoS Genet (2012) 1.03
ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. Plant J (2008) 1.00
Histone methyltransferases regulating rRNA gene dose and dosage control in Arabidopsis. Genes Dev (2012) 0.99
T cell receptor signaling co-regulates multiple Golgi genes to enhance N-glycan branching. J Biol Chem (2009) 0.95
Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana. PLoS Genet (2013) 0.94
Molecular biology. Dynamic DNA methylation. Science (2009) 0.93
A matrix protein silences transposons and repeats through interaction with retinoblastoma-associated proteins. Curr Biol (2013) 0.90
The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner. PLoS Genet (2012) 0.81