Published in BMC Genomics on March 02, 2016
The CLE gene family in Populus trichocarpa. Plant Signal Behav (2016) 0.75
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36
Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88
WebLogo: a sequence logo generator. Genome Res (2004) 59.58
affy--analysis of Affymetrix GeneChip data at the probe level. Bioinformatics (2004) 32.08
MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res (2009) 23.27
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science (2006) 21.03
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Signaling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems. Science (1999) 8.61
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. Plant J (2005) 6.07
A plant peptide encoded by CLV3 identified by in situ MALDI-TOF MS analysis. Science (2006) 3.84
Dodeca-CLE peptides as suppressors of plant stem cell differentiation. Science (2006) 3.37
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Building phylogenetic trees from molecular data with MEGA. Mol Biol Evol (2013) 3.02
A signaling module controlling the stem cell niche in Arabidopsis root meristems. Curr Biol (2009) 2.90
A large family of genes that share homology with CLAVATA3. Plant Physiol (2001) 2.84
A glycopeptide regulating stem cell fate in Arabidopsis thaliana. Nat Chem Biol (2009) 2.58
CLV3 is localized to the extracellular space, where it activates the Arabidopsis CLAVATA stem cell signaling pathway. Plant Cell (2002) 2.52
Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system. Proc Natl Acad Sci U S A (2008) 2.51
Root-specific CLE19 overexpression and the sol1/2 suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristem maintenance. Curr Biol (2003) 2.38
Moderation of Arabidopsis root stemness by CLAVATA1 and ARABIDOPSIS CRINKLY4 receptor kinase complexes. Curr Biol (2013) 2.06
Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma. BMC Genomics (2006) 2.04
The Arabidopsis CLV3-like (CLE) genes are expressed in diverse tissues and encode secreted proteins. Plant Mol Biol (2003) 1.94
Nod factor/nitrate-induced CLE genes that drive HAR1-mediated systemic regulation of nodulation. Plant Cell Physiol (2008) 1.92
RPK2 is an essential receptor-like kinase that transmits the CLV3 signal in Arabidopsis. Development (2010) 1.90
TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis. Plant Cell (2010) 1.86
Evidence for functional conservation, sufficiency, and proteolytic processing of the CLAVATA3 CLE domain. Plant Physiol (2006) 1.85
Gain-of-function phenotypes of many CLAVATA3/ESR genes, including four new family members, correlate with tandem variations in the conserved CLAVATA3/ESR domain. Plant Physiol (2006) 1.77
Bioinformatic analysis of the CLE signaling peptide family. BMC Plant Biol (2008) 1.66
The PXY-CLE41 receptor ligand pair defines a multifunctional pathway that controls the rate and orientation of vascular cell division. Development (2010) 1.64
Stem cell signaling in Arabidopsis requires CRN to localize CLV2 to the plasma membrane. Plant Physiol (2009) 1.62
A parasitism gene from a plant-parasitic nematode with function similar to CLAVATA3/ESR (CLE) of Arabidopsis thaliana. Mol Plant Pathol (2005) 1.62
Gain-of-function phenotypes of chemically synthetic CLAVATA3/ESR-related (CLE) peptides in Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol (2007) 1.60
The CLAVATA3/ESR motif of CLAVATA3 is functionally independent from the nonconserved flanking sequences. Plant Physiol (2006) 1.55
CLE peptides control Medicago truncatula nodulation locally and systemically. Plant Physiol (2010) 1.52
Mis-expression of the CLV3/ESR-like gene CLE19 in Arabidopsis leads to a consumption of root meristem. Gene (2004) 1.46
Comprehensive analysis of CLE polypeptide signaling gene expression and overexpression activity in Arabidopsis. Plant Physiol (2010) 1.39
Small signaling peptides in Arabidopsis development: how cells communicate over a short distance. Plant Cell (2012) 1.38
Plant CLE peptides from two distinct functional classes synergistically induce division of vascular cells. Proc Natl Acad Sci U S A (2008) 1.37
The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome. New Phytol (2009) 1.31
CLAVATA2 forms a distinct CLE-binding receptor complex regulating Arabidopsis stem cell specification. Plant J (2010) 1.27
Regulation of Arabidopsis embryo and endosperm development by the polypeptide signaling molecule CLE8. Plant Cell (2012) 1.14
Analysis of interactions among the CLAVATA3 receptors reveals a direct interaction between CLAVATA2 and CORYNE in Arabidopsis. Plant J (2009) 1.14
CLE-CLAVATA1 peptide-receptor signaling module regulates the expansion of plant root systems in a nitrogen-dependent manner. Proc Natl Acad Sci U S A (2014) 1.13
Small post-translationally modified Peptide signals in Arabidopsis. Arabidopsis Book (2011) 1.12
Nematode CLE signaling in Arabidopsis requires CLAVATA2 and CORYNE. Plant J (2010) 1.11
Xylem development - from the cradle to the grave. New Phytol (2015) 1.05
The roles of different CLE domains in Arabidopsis CLE polypeptide activity and functional specificity. Mol Plant (2010) 1.03
CLE peptides can negatively regulate protoxylem vessel formation via cytokinin signaling. Plant Cell Physiol (2010) 1.02
CLV3/ESR-related (CLE) peptides as intercellular signaling molecules in plants. Chem Rec (2006) 1.01
Diverse and conserved roles of CLE peptides. Curr Opin Plant Biol (2007) 1.01
Antagonistic peptide technology for functional dissection of CLV3/ESR genes in Arabidopsis. Plant Physiol (2013) 0.97
The Function of the CLE Peptides in Plant Development and Plant-Microbe Interactions. Arabidopsis Book (2011) 0.96
Soybean nodule-enhanced CLE peptides in roots act as signals in GmNARK-mediated nodulation suppression. Plant Cell Physiol (2011) 0.95
Contributions of individual amino acid residues to the endogenous CLV3 function in shoot apical meristem maintenance in Arabidopsis. Mol Plant (2012) 0.93
Evolutionarily conserved CLE peptide signaling in plant development, symbiosis, and parasitism. Curr Opin Plant Biol (2013) 0.92
Synergistic interaction of CLAVATA1, CLAVATA2, and RECEPTOR-LIKE PROTEIN KINASE 2 in cyst nematode parasitism of Arabidopsis. Mol Plant Microbe Interact (2013) 0.91
Regulation of vascular development by CLE peptide-receptor systems. J Integr Plant Biol (2010) 0.90
A large family of genes that share homology with CLE domain in Arabidopsis and rice. Plant Signal Behav (2008) 0.90
CLE Peptide Signaling and Crosstalk with Phytohormones and Environmental Stimuli. Front Plant Sci (2016) 0.89
Wood Formation in Trees Is Increased by Manipulating PXY-Regulated Cell Division. Curr Biol (2015) 0.88
Establishment and maintenance of vascular cell communities through local signaling. Curr Opin Plant Biol (2010) 0.86
Genome-wide identification, characterization and expression analysis of populus leucine-rich repeat receptor-like protein kinase genes. BMC Genomics (2013) 0.86
WUSCHEL-related Homeobox genes in Populus tomentosa: diversified expression patterns and a functional similarity in adventitious root formation. BMC Genomics (2014) 0.85
Role of nematode peptides and other small molecules in plant parasitism. Annu Rev Phytopathol (2012) 0.85
Bioinformatic and phylogenetic analysis of the CLAVATA3/EMBRYO-SURROUNDING REGION (CLE) and the CLE-LIKE signal peptide genes in the Pinophyta. BMC Plant Biol (2014) 0.85
Endogenous peptide ligand-receptor systems for diverse signaling networks in plants. Curr Opin Plant Biol (2014) 0.85
CLE peptides in vascular development. J Integr Plant Biol (2013) 0.81
Genome-wide characterization, expression and functional analysis of CLV3/ESR gene family in tomato. BMC Genomics (2014) 0.78
The sequence flanking the N-terminus of the CLV3 peptide is critical for its cleavage and activity in stem cell regulation in Arabidopsis. BMC Plant Biol (2013) 0.78
Genome analysis of poplar LRR-RLP gene clusters reveals RISP, a defense-related gene coding a candidate endogenous peptide elicitor. Front Plant Sci (2014) 0.77
CLE peptides in plants: proteolytic processing, structure-activity relationship, and ligand-receptor interaction. J Integr Plant Biol (2012) 0.76