Bioinformatic and phylogenetic analysis of the CLAVATA3/EMBRYO-SURROUNDING REGION (CLE) and the CLE-LIKE signal peptide genes in the Pinophyta.

PubWeight™: 0.85‹?›

🔗 View Article (PMC 4016512)

Published in BMC Plant Biol on February 14, 2014

Authors

Timothy J Strabala1, Lorelle Phillips, Mark West, Lisa Stanbra

Author Affiliations

1: Scion, 49 Sala St, PO Box 3020, Rotorua 3010, New Zealand. strabala@clear.net.nz.

Articles cited by this

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76

SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods (2011) 33.90

The Staden sequence analysis package. Mol Biotechnol (1996) 9.61

Signaling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems. Science (1999) 8.61

The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12

The Norway spruce genome sequence and conifer genome evolution. Nature (2013) 4.74

A plant peptide encoded by CLV3 identified by in situ MALDI-TOF MS analysis. Science (2006) 3.84

Dodeca-CLE peptides as suppressors of plant stem cell differentiation. Science (2006) 3.37

A signaling module controlling the stem cell niche in Arabidopsis root meristems. Curr Biol (2009) 2.90

A large family of genes that share homology with CLAVATA3. Plant Physiol (2001) 2.84

A glycopeptide regulating stem cell fate in Arabidopsis thaliana. Nat Chem Biol (2009) 2.58

Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proc Natl Acad Sci U S A (2000) 2.58

CLV3 is localized to the extracellular space, where it activates the Arabidopsis CLAVATA stem cell signaling pathway. Plant Cell (2002) 2.52

Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system. Proc Natl Acad Sci U S A (2008) 2.51

Root-specific CLE19 overexpression and the sol1/2 suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristem maintenance. Curr Biol (2003) 2.38

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data. Bioinformatics (2013) 2.18

Secreted peptide signals required for maintenance of root stem cell niche in Arabidopsis. Science (2010) 1.94

Nod factor/nitrate-induced CLE genes that drive HAR1-mediated systemic regulation of nodulation. Plant Cell Physiol (2008) 1.92

Gain-of-function phenotypes of many CLAVATA3/ESR genes, including four new family members, correlate with tandem variations in the conserved CLAVATA3/ESR domain. Plant Physiol (2006) 1.77

Bioinformatic analysis of the CLE signaling peptide family. BMC Plant Biol (2008) 1.66

The PXY-CLE41 receptor ligand pair defines a multifunctional pathway that controls the rate and orientation of vascular cell division. Development (2010) 1.64

Gain-of-function phenotypes of chemically synthetic CLAVATA3/ESR-related (CLE) peptides in Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol (2007) 1.60

Tyrosine-sulfated glycopeptide involved in cellular proliferation and expansion in Arabidopsis. Proc Natl Acad Sci U S A (2007) 1.56

CLE peptides control Medicago truncatula nodulation locally and systemically. Plant Physiol (2010) 1.52

Plant CLE peptides from two distinct functional classes synergistically induce division of vascular cells. Proc Natl Acad Sci U S A (2008) 1.37

CLE-like (CLEL) peptides control the pattern of root growth and lateral root development in Arabidopsis. Proc Natl Acad Sci U S A (2012) 1.22

GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses. Dev Cell (2012) 1.19

Diversity of Arabidopsis genes encoding precursors for phytosulfokine, a peptide growth factor. Plant Physiol (2001) 1.16

Characterization of a CLE processing activity. Plant Mol Biol (2010) 1.16

Regulation of Arabidopsis embryo and endosperm development by the polypeptide signaling molecule CLE8. Plant Cell (2012) 1.14

Alternative splicing of prosystemin pre-mRNA produces two isoforms that are active as signals in the wound response pathway. Plant Mol Biol (2001) 1.12

Purification and characterization of rat des-Gln14-Ghrelin, a second endogenous ligand for the growth hormone secretagogue receptor. J Biol Chem (2000) 1.03

Cell differentiation, secondary cell-wall formation and transformation of callus tissue of Pinus radiata D. Don. Planta (2003) 0.99

Soybean nodule-enhanced CLE peptides in roots act as signals in GmNARK-mediated nodulation suppression. Plant Cell Physiol (2011) 0.95

Wood formation from the base to the crown in Pinus radiata: gradients of tracheid wall thickness, wood density, radial growth rate and gene expression. Plant Mol Biol (2006) 0.94

Border sequences of Medicago truncatula CLE36 are specifically cleaved by endoproteases common to the extracellular fluids of Medicago and soybean. J Exp Bot (2011) 0.88

Zinnia. Everybody needs good neighbors. Plant Physiol (2001) 0.88

The Arabidopsis wood model-the case for the inflorescence stem. Plant Sci (2013) 0.84

Articles by these authors

C4 grasses prosper as carbon dioxide eliminates desiccation in warmed semi-arid grassland. Nature (2011) 3.10

Exploring lignification in conifers by silencing hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyltransferase in Pinus radiata. Proc Natl Acad Sci U S A (2007) 1.39

Carbon dioxide enrichment alters plant community structure and accelerates shrub growth in the shortgrass steppe. Proc Natl Acad Sci U S A (2007) 1.35

Suppression of 4-coumarate-CoA ligase in the coniferous gymnosperm Pinus radiata. Plant Physiol (2008) 1.31

Hyperkalemic hypertension-associated cullin 3 promotes WNK signaling by degrading KLHL3. J Clin Invest (2014) 1.18

Additive and logistic EuroSCORE performance in high risk patients. Interact Cardiovasc Thorac Surg (2005) 1.14

CCoAOMT suppression modifies lignin composition in Pinus radiata. Plant J (2011) 1.09

Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species. Plant J (2003) 1.03

Monitoring Tribolium castaneum (Coleoptera: Tenebrionidae) in pilot-scale warehouses treated with residual applications of (S)-hydroprene and cyfluthrin. J Econ Entomol (2005) 0.97

Inactivation of the hereditary spastic paraplegia-associated Hspd1 gene encoding the Hsp60 chaperone results in early embryonic lethality in mice. Cell Stress Chaperones (2010) 0.93

Exploring the ultrastructural localization and biosynthesis of beta(1,4)-galactan in Pinus radiata compression wood. Plant Physiol (2009) 0.92

Late onset motoneuron disorder caused by mitochondrial Hsp60 chaperone deficiency in mice. Neurobiol Dis (2013) 0.91

Gene silencing of cinnamyl alcohol dehydrogenase in Pinus radiata callus cultures. Plant Physiol Biochem (2005) 0.89

Gene silencing studies in the gymnosperm species Pinus radiata. Plant Cell Rep (2005) 0.87

Proteomic analysis of membrane preparations from developing Pinus radiata compression wood. Tree Physiol (2010) 0.86

Suppression of CCR impacts metabolite profile and cell wall composition in Pinus radiata tracheary elements. Plant Mol Biol (2012) 0.81

Blood-feeding behavior of vesicular stomatitis virus infected Culicoides sonorensis (Diptera: Ceratopogonidae). J Med Entomol (2008) 0.81

Tumor P-Glycoprotein Correlates with Efficacy of PF-3758309 in in vitro and in vivo Models of Colorectal Cancer. Front Pharmacol (2013) 0.81

Polybrominated diphenyl ethers in U.S. Meat and poultry from two statistically designed surveys showing trends and levels from 2002 to 2008. J Agric Food Chem (2011) 0.81

Interrupted incubation and short-term storage of the alfalfa pollinator Megachile rotundata (Hymenoptera: Megachilidae): a potential tool for synchronizing bees with bloom. J Econ Entomol (2010) 0.79

A fluctuating thermal regime improves survival of cold-mediated delayed emergence in developing Megachile rotundata (Hymenoptera: Megachilidae). J Econ Entomol (2011) 0.78

Support of large breasts during tangential irradiation using a micro-shell and minimizing the skin dose--a pilot study. Med Dosim (2005) 0.77

Aortic valve replacement with continuously perfused beating heart in patients with patent bypass conduits. Eur J Cardiothorac Surg (2004) 0.77

Estrogenicity and nutrient concentration of surface waters surrounding a large confinement dairy operation using best management practices for land application of animal wastes. Environ Sci Technol (2010) 0.76

Novel Cul3 binding proteins function to remodel E3 ligase complexes. BMC Cell Biol (2014) 0.75

Mixed-grass prairie canopy structure and spectral reflectance vary with topographic position. Environ Manage (2012) 0.75

Zeroing in on best procurement practices. Supply chain execs discuss strategies for savings on physician-preference items. Mod Healthc (2013) 0.75