Published in Sci Rep on July 28, 2016
Genome-Wide Transcriptional Profiling to Elucidate Key Candidates Involved in Bud Burst and Rattling Growth in a Subtropical Bamboo (Dendrocalamus hamiltonii). Front Plant Sci (2017) 0.75
Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing. Front Plant Sci (2017) 0.75
Spatial transcriptome analysis provides insights of key gene(s) involved in steroidal saponin biosynthesis in medicinally important herb Trillium govanianum. Sci Rep (2017) 0.75
Molecular dissection of transcriptional reprogramming of steviol glycosides synthesis in leaf tissue during developmental phase transitions in Stevia rebaudiana Bert. Sci Rep (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods (2008) 126.81
KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res (2000) 117.00
Fast gapped-read alignment with Bowtie 2. Nat Methods (2012) 83.79
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics (2009) 67.17
De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics (2006) 43.68
The plant immune system. Nature (2006) 33.70
Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics (2010) 26.76
agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res (2010) 10.53
Bacterial disease resistance in Arabidopsis through flagellin perception. Nature (2004) 7.74
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell (2003) 7.66
The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nat Genet (2000) 5.42
Ethylene biosynthesis and signaling networks. Plant Cell (2002) 5.37
LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. Curr Opin Genet Dev (1995) 4.20
PlnTFDB: an integrative plant transcription factor database. BMC Bioinformatics (2007) 3.01
The role of WRKY transcription factors in plant immunity. Plant Physiol (2009) 2.98
Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics (2011) 2.84
How do plants achieve immunity? Defence without specialized immune cells. Nat Rev Immunol (2012) 2.67
Regulation of the Arabidopsis defense transcriptome. Trends Plant Sci (2005) 2.04
Mitogen-activated protein kinases 3 and 6 are required for full priming of stress responses in Arabidopsis thaliana. Plant Cell (2009) 2.01
Transgenerational changes in the genome stability and methylation in pathogen-infected plants: (virus-induced plant genome instability). Nucleic Acids Res (2007) 1.93
Plant chitinases--regulation and function. Cell Mol Biol Lett (2003) 1.89
RPP13 is a simple locus in Arabidopsis thaliana for alleles that specify downy mildew resistance to different avirulence determinants in Peronospora parasitica. Plant J (2000) 1.69
Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants. Front Microbiol (2013) 1.69
annot8r: GO, EC and KEGG annotation of EST datasets. BMC Bioinformatics (2008) 1.64
The Arabidopsis flavin-dependent monooxygenase FMO1 is an essential component of biologically induced systemic acquired resistance. Plant Physiol (2006) 1.42
An RNA isolation system for plant tissues rich in secondary metabolites. BMC Res Notes (2011) 1.32
Global transcriptome profiles of Camellia sinensis during cold acclimation. BMC Genomics (2013) 1.31
Identification, characterization and utilization of unigene derived microsatellite markers in tea (Camellia sinensis L.). BMC Plant Biol (2009) 1.24
De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments. BMC Genomics (2012) 1.19
NpPDR1, a pleiotropic drug resistance-type ATP-binding cassette transporter from Nicotiana plumbaginifolia, plays a major role in plant pathogen defense. Plant Physiol (2005) 1.16
The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses. Genetica (1997) 1.05
A xyloglucan endotransglucosylase/hydrolase involves in growth of primary root and alters the deposition of cellulose in Arabidopsis. Planta (2007) 1.03
Ribosomal RNA processing and an RNase R family member in chloroplasts of Arabidopsis. Plant Mol Biol (2004) 0.96
Molecular mechanisms of green tea polyphenols. Nutr Cancer (2009) 0.95
Recognition events and host-pathogen co-evolution in gene-for-gene resistance to flax rust. Funct Plant Biol (2009) 0.93
Next Generation Sequencing Technologies: The Doorway to the Unexplored Genomics of Non-Model Plants. Front Plant Sci (2015) 0.90
Exploring multiple drug and herbicide resistance in plants--spotlight on transporter proteins. Plant Sci (2010) 0.89
De novo transcriptome sequencing and analysis for Venturia inaequalis, the devastating apple scab pathogen. PLoS One (2013) 0.87
Global transcriptome and gene regulation network for secondary metabolite biosynthesis of tea plant (Camellia sinensis). BMC Genomics (2015) 0.85
Can silencing of transposons contribute to variation in effector gene expression in Phytophthora infestans? Mob Genet Elements (2012) 0.82
RNA-seq-mediated transcriptome analysis of actively growing and winter dormant shoots identifies non-deciduous habit of evergreen tree tea during winters. Sci Rep (2014) 0.82
AFLP-based genetic diversity assessment of commercially important tea germplasm in India. Biochem Genet (2010) 0.80
Analysis of dormant bud (Banjhi) specific transcriptome of tea (Camellia sinensis (L.) O. Kuntze) from cDNA library revealed dormancy-related genes. Appl Biochem Biotechnol (2013) 0.78