Published in Proc Natl Acad Sci U S A on October 04, 2016
Splendor and misery of adaptation, or the importance of neutral null for understanding evolution. BMC Biol (2016) 0.76
Profile of Eugene V. Koonin. Proc Natl Acad Sci U S A (2017) 0.75
Reconstruction of the evolution of microbial defense systems. BMC Evol Biol (2017) 0.75
Substance P and Calcitonin Gene-Related Peptide: Key Regulators of Cutaneous Microbiota Homeostasis. Front Endocrinol (Lausanne) (2017) 0.75
The Evolution of Bacterial Genome Architecture. Front Genet (2017) 0.75
A genomic perspective on protein families. Science (1997) 50.51
The origins of genome complexity. Science (2003) 12.25
The frailty of adaptive hypotheses for the origins of organismal complexity. Proc Natl Acad Sci U S A (2007) 4.96
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world. Nucleic Acids Res (2008) 4.78
Random walk models in biology. J R Soc Interface (2008) 4.75
Evidence for DNA loss as a determinant of genome size. Science (2000) 4.25
The origins of eukaryotic gene structure. Mol Biol Evol (2005) 4.11
Trends between gene content and genome size in prokaryotic species with larger genomes. Proc Natl Acad Sci U S A (2004) 3.89
The population genetics of dN/dS. PLoS Genet (2008) 3.88
Comparative genomics, minimal gene-sets and the last universal common ancestor. Nat Rev Microbiol (2003) 3.59
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification. Nucleic Acids Res (2014) 3.42
Scaling laws in the functional content of genomes. Trends Genet (2003) 3.23
Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli. Genome Res (2004) 3.12
The application of statistical physics to evolutionary biology. Proc Natl Acad Sci U S A (2005) 2.69
Expanded microbial genome coverage and improved protein family annotation in the COG database. Nucleic Acids Res (2014) 2.37
DNA loss and evolution of genome size in Drosophila. Genetica (2002) 2.00
Streamlining and simplification of microbial genome architecture. Annu Rev Microbiol (2006) 1.96
Comparative genomics of defense systems in archaea and bacteria. Nucleic Acids Res (2013) 1.82
Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol (2008) 1.79
Scaling laws in functional genome content across prokaryotic clades and lifestyles. Trends Genet (2009) 1.73
Operon formation is driven by co-regulation and not by horizontal gene transfer. Genome Res (2005) 1.64
The dynamics of adaptation on correlated fitness landscapes. Proc Natl Acad Sci U S A (2009) 1.61
Toolbox model of evolution of prokaryotic metabolic networks and their regulation. Proc Natl Acad Sci U S A (2009) 1.60
Evolution of genome architecture. Int J Biochem Cell Biol (2008) 1.48
Deletional bias across the three domains of life. Genome Biol Evol (2009) 1.40
Genome reduction as the dominant mode of evolution. Bioessays (2013) 1.36
The bioenergetic costs of a gene. Proc Natl Acad Sci U S A (2015) 1.30
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res (2008) 1.30
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes. BMC Biol (2014) 1.21
Interplay of heritage and habitat in the distribution of bacterial signal transduction systems. Mol Biosyst (2010) 1.16
A non-adaptationist perspective on evolution of genomic complexity or the continued dethroning of man. Cell Cycle (2004) 0.98
Population diversity of ORFan genes in Escherichia coli. Genome Biol Evol (2012) 0.85
Natural selection for operons depends on genome size. Genome Biol Evol (2013) 0.82
Formal properties of the probability of fixation: identities, inequalities and approximations. Theor Popul Biol (2014) 0.80
Horizontal transfer beyond genes. Proc Natl Acad Sci U S A (2014) 0.77
Mapping vaccinia virus DNA replication origins at nucleotide level by deep sequencing. Proc Natl Acad Sci U S A (2015) 0.77
Energetics and population genetics at the root of eukaryotic cellular and genomic complexity. Proc Natl Acad Sci U S A (2015) 0.76