Genome Sequencing and Comparative Genomics Analysis Revealed Pathogenic Potential in Penicillium capsulatum as a Novel Fungal Pathogen Belonging to Eurotiales.

PubWeight™: 0.77‹?›

🔗 View Article (PMID 27761131)

Published in Front Microbiol on October 05, 2016

Authors

Ying Yang1, Min Chen2, Zongwei Li3, Abdullah M S Al-Hatmi4, Sybren de Hoog5, Weihua Pan6, Qiang Ye7, Xiaochen Bo8, Zhen Li8, Shengqi Wang8, Junzhi Wang9, Huipeng Chen10, Wanqing Liao6

Author Affiliations

1: Beijing Institute of BiotechnologyBeijing, China; Beijing Institute of Radiation MedicineBeijing, China; National Institutes for Food and Drug ControlBeijing, China.
2: Department of Dermatology, Shanghai Key Laboratory of Molecular Medical Mycology, Shanghai Institute of Medical Mycology, Shanghai Changzheng HospitalShanghai, China; CBS-KNAW Fungal Biodiversity CentreUtrecht, Netherlands; Institute of Biodiversity and Ecosystem Dynamics, University of AmsterdamAmsterdam, Netherlands.
3: Center for Hospital Infection Control, Chinese PLA Institute for Disease Control and Prevention Beijing, China.
4: CBS-KNAW Fungal Biodiversity CentreUtrecht, Netherlands; Institute of Biodiversity and Ecosystem Dynamics, University of AmsterdamAmsterdam, Netherlands; Directorate General of Health Services, Ibri Hospital, Ministry of HealthIbri, Oman.
5: CBS-KNAW Fungal Biodiversity CentreUtrecht, Netherlands; Institute of Biodiversity and Ecosystem Dynamics, University of AmsterdamAmsterdam, Netherlands.
6: Department of Dermatology, Shanghai Key Laboratory of Molecular Medical Mycology, Shanghai Institute of Medical Mycology, Shanghai Changzheng Hospital Shanghai, China.
7: National Institutes for Food and Drug ControlBeijing, China; Key Laboratory of the Ministry of Health for Research on Quality and Standardization of Biotech ProductsBeijing, China.
8: Beijing Institute of Radiation Medicine Beijing, China.
9: National Institutes for Food and Drug Control Beijing, China.
10: Beijing Institute of Biotechnology Beijing, China.

Articles cited by this

The Sequence Alignment/Map format and SAMtools. Bioinformatics (2009) 232.39

Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res (1997) 142.55

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol (2010) 75.21

Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics (2010) 52.01

Versatile and open software for comparing large genomes. Genome Biol (2004) 49.45

Circos: an information aesthetic for comparative genomics. Genome Res (2009) 40.02

MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol (2013) 34.34

SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods (2011) 33.90

OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res (2003) 33.03

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol (2013) 32.42

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics (2014) 28.04

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One (2010) 24.31

Global trends in emerging infectious diseases. Nature (2008) 23.66

Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res (2005) 23.41

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res (2005) 19.81

A hidden Markov model for predicting transmembrane helices in protein sequences. Proc Int Conf Intell Syst Mol Biol (1998) 14.18

The challenge of emerging and re-emerging infectious diseases. Nature (2004) 8.94

ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics (2011) 8.68

InterProScan 5: genome-scale protein function classification. Bioinformatics (2014) 8.52

Emerging fungal threats to animal, plant and ecosystem health. Nature (2012) 8.20

antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res (2013) 8.10

Impacts of biodiversity on the emergence and transmission of infectious diseases. Nature (2010) 6.55

Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics (2008) 5.46

Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum. Nat Biotechnol (2008) 3.16

Phylogeny of Penicillium and the segregation of Trichocomaceae into three families. Stud Mycol (2011) 2.71

Sequencing technologies and genome sequencing. J Appl Genet (2011) 2.52

Identification of a polyketide synthase gene (pksP) of Aspergillus fumigatus involved in conidial pigment biosynthesis and virulence. Med Microbiol Immunol (1998) 2.36

Calcineurin controls growth, morphology, and pathogenicity in Aspergillus fumigatus. Eukaryot Cell (2006) 2.35

Distinct roles for intra- and extracellular siderophores during Aspergillus fumigatus infection. PLoS Pathog (2007) 2.17

Glycosylphosphatidylinositol-anchored glucanosyltransferases play an active role in the biosynthesis of the fungal cell wall. J Biol Chem (2000) 2.13

Phylogeny and nomenclature of the genus Talaromyces and taxa accommodated in Penicillium subgenus Biverticillium. Stud Mycol (2011) 1.98

The Aspergillus fumigatus siderophore biosynthetic gene sidA, encoding L-ornithine N5-oxygenase, is required for virulence. Infect Immun (2005) 1.84

Purification and characterisation of an extracellular serine proteinase from Aspergillus fumigatus and its detection in tissue. J Med Microbiol (1990) 1.76

The alkaline protease of Aspergillus fumigatus is not a virulence determinant in two murine models of invasive pulmonary aspergillosis. Infect Immun (1993) 1.63

Attenuated virulence of uridine-uracil auxotrophs of Aspergillus fumigatus. Infect Immun (1996) 1.60

Evidence for possible involvement of an elastolytic serine protease in aspergillosis. Infect Immun (1993) 1.58

Invasive infection due to penicillium species other than P. marneffei. J Infect (2002) 1.58

Global warming will bring new fungal diseases for mammals. MBio (2010) 1.56

Calcineurin inhibition or mutation enhances cell wall inhibitors against Aspergillus fumigatus. Antimicrob Agents Chemother (2007) 1.54

The Pathogen-Host Interactions database (PHI-base): additions and future developments. Nucleic Acids Res (2014) 1.53

Signature-tagged and directed mutagenesis identify PABA synthetase as essential for Aspergillus fumigatus pathogenicity. Mol Microbiol (2000) 1.52

Disruption of the Aspergillus fumigatus gene encoding nucleolar protein CgrA impairs thermotolerant growth and reduces virulence. Infect Immun (2004) 1.52

Phylogeny, identification and nomenclature of the genus Aspergillus. Stud Mycol (2014) 1.50

Cloning and disruption of the gene encoding an extracellular metalloprotease of Aspergillus fumigatus. Mol Microbiol (1994) 1.49

What makes Aspergillus fumigatus a successful pathogen? Genes and molecules involved in invasive aspergillosis. Rev Iberoam Micol (2010) 1.48

An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome. BMC Genomics (2013) 1.33

Deletion of GEL2 encoding for a beta(1-3)glucanosyltransferase affects morphogenesis and virulence in Aspergillus fumigatus. Mol Microbiol (2005) 1.33

Gene silencing with RNA interference in the human pathogenic fungus Aspergillus fumigatus. FEMS Microbiol Lett (2004) 1.32

Cloning and disruption of the antigenic catalase gene of Aspergillus fumigatus. Infect Immun (1997) 1.24

Aspergillus fumigatus: cell wall polysaccharides, their biosynthesis and organization. Future Microbiol (2009) 1.23

Aspergillus cyclooxygenase-like enzymes are associated with prostaglandin production and virulence. Infect Immun (2005) 1.23

The regulation of zinc homeostasis by the ZafA transcriptional activator is essential for Aspergillus fumigatus virulence. Mol Microbiol (2007) 1.21

A nonribosomal peptide synthetase (Pes1) confers protection against oxidative stress in Aspergillus fumigatus. FEBS J (2006) 1.19

AGS3, an alpha(1-3)glucan synthase gene family member of Aspergillus fumigatus, modulates mycelium growth in the lung of experimentally infected mice. Fungal Genet Biol (2006) 1.15

The isolation of FOS-1, a gene encoding a putative two-component histidine kinase from Aspergillus fumigatus. Fungal Genet Biol (2000) 1.13

The current role of Aspergillus and Penicillium in human and animal health. J Med Vet Mycol (1994) 1.09

Disruption of the Aspergillus fumigatus ECM33 homologue results in rapid conidial germination, antifungal resistance and hypervirulence. Microbiology (2006) 1.08

Role of trehalose biosynthesis in Aspergillus fumigatus development, stress response, and virulence. Infect Immun (2010) 1.08

fos-1, a putative histidine kinase as a virulence factor for systemic aspergillosis. Med Mycol (2002) 1.06

Endemic fungal infections in the Asia-Pacific region. Med Mycol (2011) 1.05

Identification of the catalytic residues of the first family of beta(1-3)glucanosyltransferases identified in fungi. Biochem J (2000) 1.05

Aspergillus fumigatus survival in alkaline and extreme zinc-limiting environments relies on the induction of a zinc homeostasis system encoded by the zrfC and aspf2 genes. Eukaryot Cell (2009) 1.03

Aspergillus fumigatus conidial pigment and cAMP signal transduction: significance for virulence. Med Mycol (2005) 1.01

Pulmonary fungus ball caused by Penicillium capsulatum in a patient with type 2 diabetes: a case report. BMC Infect Dis (2013) 0.93

Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order - Phaeomoniellales. Mol Phylogenet Evol (2015) 0.90

Glycosylphosphatidylinositol-anchored Ecm33p influences conidial cell wall biosynthesis in Aspergillus fumigatus. Appl Environ Microbiol (2006) 0.90

From molecular to genomic epidemiology: transforming surveillance and control of infectious diseases. Euro Surveill (2013) 0.90

The putative alpha-1,2-mannosyltransferase AfMnt1 of the opportunistic fungal pathogen Aspergillus fumigatus is required for cell wall stability and full virulence. Eukaryot Cell (2008) 0.90

Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak. BMC Infect Dis (2013) 0.88

Mitogen activated protein kinases of Aspergillus fumigatus. Med Mycol (2005) 0.84

Host cell invasion by medically important fungi. Cold Spring Harb Perspect Med (2014) 0.79

Siderophore Biosynthesis but Not Reductive Iron Assimilation Is Essential for the Dimorphic Fungus Nomuraea rileyi Conidiation, Dimorphism Transition, Resistance to Oxidative Stress, Pigmented Microsclerotium Formation, and Virulence. Front Microbiol (2016) 0.76