Published in Front Cell Infect Microbiol on April 19, 2017
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc (2009) 137.99
Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res (2003) 103.76
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res (2008) 54.83
A human gut microbial gene catalogue established by metagenomic sequencing. Nature (2010) 43.63
Pfam: the protein families database. Nucleic Acids Res (2013) 22.48
STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res (2012) 18.26
Infection by verocytotoxin-producing Escherichia coli. Clin Microbiol Rev (1989) 16.53
WoLF PSORT: protein localization predictor. Nucleic Acids Res (2007) 10.14
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics (2010) 6.57
Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. Genome Res (2004) 5.26
Enterohaemorrhagic Escherichia coli in human medicine. Int J Med Microbiol (2005) 4.63
pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J Bacteriol (2005) 2.60
Genomic anatomy of Escherichia coli O157:H7 outbreaks. Proc Natl Acad Sci U S A (2011) 2.13
Ubx2 links the Cdc48 complex to ER-associated protein degradation. Nat Cell Biol (2005) 2.12
Initial steps of Shigella infection depend on the cholesterol/sphingolipid raft-mediated CD44-IpaB interaction. EMBO J (2002) 1.99
Intestinal alkaline phosphatase is a gut mucosal defense factor maintained by enteral nutrition. Proc Natl Acad Sci U S A (2008) 1.97
Genome evolution in major Escherichia coli O157:H7 lineages. BMC Genomics (2007) 1.96
Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW). J Bacteriol (2002) 1.94
A mechanical signal transmitted by the flagellum controls signalling in Bacillus subtilis. Mol Microbiol (2013) 1.89
Key role of poly-gamma-DL-glutamic acid in immune evasion and virulence of Staphylococcus epidermidis. J Clin Invest (2005) 1.64
Genetic mapping of tyramine oxidase and arylsulfatase genes and their regulation in intergeneric hybrids of enteric bacteria. J Bacteriol (1978) 1.45
Human response to Escherichia coli O157:H7 infection: antibodies to secreted virulence factors. Infect Immun (2000) 1.36
Stress wars: the direct role of host and bacterial molecular chaperones in bacterial infection. Infect Immun (2006) 1.35
Periplasmic peptidyl prolyl cis-trans isomerases are not essential for viability, but SurA is required for pilus biogenesis in Escherichia coli. J Bacteriol (2005) 1.35
Simultaneous analysis of host and pathogen interactions during an in vivo infection reveals local induction of host acute phase response proteins, a novel bacterial stress response, and evidence of a host-imposed metal ion limited environment. Cell Microbiol (2004) 1.27
Transcriptomic response of Escherichia coli O157:H7 to oxidative stress. Appl Environ Microbiol (2009) 1.20
Synthesis of lipopolysaccharide O-antigens by ABC transporter-dependent pathways. Carbohydr Res (2012) 1.19
Formate protects stationary-phase Escherichia coli and Salmonella cells from killing by a cationic antimicrobial peptide. Mol Microbiol (2000) 1.19
Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs. BMC Med Genomics (2009) 1.18
The D-allose operon of Escherichia coli K-12. J Bacteriol (1997) 1.14
Lineage and host source are both correlated with levels of Shiga toxin 2 production by Escherichia coli O157:H7 strains. Appl Environ Microbiol (2009) 1.11
Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions. Biol Direct (2014) 1.08
Nitric oxide and salmonella pathogenesis. Front Microbiol (2011) 1.06
Primary Amine Oxidase of Escherichia coli Is a Metabolic Enzyme that Can Use a Human Leukocyte Molecule as a Substrate. PLoS One (2015) 1.06
Escherichia coli O157:H7 strain origin, lineage, and Shiga toxin 2 expression affect colonization of cattle. Appl Environ Microbiol (2009) 1.05
Transcription of ahpC, katG, and katE genes in Escherichia coli is regulated by polyamines: polyamine-deficient mutant sensitive to H2O2-induced oxidative damage. Biochem Biophys Res Commun (2003) 1.05
Role of lipopolysaccharides in the adhesion, retention, and transport of Escherichia coli JM109. Environ Sci Technol (2003) 1.04
The host response to the probiotic Escherichia coli strain Nissle 1917: specific up-regulation of the proinflammatory chemokine MCP-1. BMC Med Genet (2005) 1.01
Outer membrane protein A of Escherichia coli O157:H7 stimulates dendritic cell activation. Infect Immun (2006) 1.01
Computational prediction of host-parasite protein interactions between P. falciparum and H. sapiens. PLoS One (2011) 1.00
Peroxynitrite toxicity in Escherichia coli K12 elicits expression of oxidative stress responses and protein nitration and nitrosylation. J Biol Chem (2010) 0.99
Phosphoglucose isomerase/autocrine motility factor mediates epithelial and mesenchymal phenotype conversions in breast cancer. Cancer Res (2009) 0.98
NsrR, GadE, and GadX interplay in repressing expression of the Escherichia coli O157:H7 LEE pathogenicity island in response to nitric oxide. PLoS Pathog (2014) 0.92
Enteropathogenic Escherichia coli outer membrane proteins induce changes in cadherin junctions of Caco-2 cells through activation of PKCalpha. Microbes Infect (2004) 0.92
The gusBC genes of Escherichia coli encode a glucuronide transport system. J Bacteriol (2005) 0.91
Multifunctional enzymes in archaea: promiscuity and moonlight. Extremophiles (2013) 0.89
Strain-dependent cellular immune responses in cattle following Escherichia coli O157:H7 colonization. Infect Immun (2014) 0.88
Transport activity of FhuA, FhuC, FhuD, and FhuB derivatives in a system free of polar effects, and stoichiometry of components involved in ferrichrome uptake. Mol Gen Genet (1998) 0.88
Functional analysis of ycfR and ycfQ in Escherichia coli O157:H7 linked to outbreaks of illness associated with fresh produce. Appl Environ Microbiol (2011) 0.85
Flagella interact with ionic plant lipids to mediate adherence of pathogenic Escherichia coli to fresh produce plants. Environ Microbiol (2013) 0.85
Bacterial flagella: twist and stick, or dodge across the kingdoms. PLoS Pathog (2015) 0.85
Ginkgolic acids and Ginkgo biloba extract inhibit Escherichia coli O157:H7 and Staphylococcus aureus biofilm formation. Int J Food Microbiol (2014) 0.84
Pathogenicity, host responses and implications for management of enterohemorrhagic Escherichia coli O157:H7 infection. Can J Gastroenterol (2013) 0.84
The putative thiosulfate sulfurtransferases PspE and GlpE contribute to virulence of Salmonella Typhimurium in the mouse model of systemic disease. PLoS One (2013) 0.83
Prediction of protein-protein interactions between Helicobacter pylori and a human host. Mol Biosyst (2009) 0.82
Infection of Burkholderia cepacia induces homeostatic responses in the host for their prolonged survival: the microarray perspective. PLoS One (2013) 0.81
Insights into mucosal innate responses to Escherichia coli O157 : H7 colonization of cattle by mathematical modelling of excretion dynamics. J R Soc Interface (2011) 0.80
Combined quantum mechanics/molecular mechanics study on the reversible isomerization of glucose and fructose catalyzed by Pyrococcus furiosus phosphoglucose isomerase. J Am Chem Soc (2008) 0.78
Mannose inhibition of Escherichia coli adherence to urinary bladder epithelium: comparison with yeast agglutination. Urol Res (1985) 0.78
Immune signalling responses in intestinal epithelial cells exposed to pathogenic Escherichia coli and lactic acid-producing probiotics. Benef Microbes (2013) 0.78
ABCB1 (P-glycoprotein) reduces bacterial attachment to human gastrointestinal LS174T epithelial cells. Eur J Pharmacol (2012) 0.77
CompNet: a GUI based tool for comparison of multiple biological interaction networks. BMC Bioinformatics (2016) 0.76
Steady state analysis of the genetic regulatory network incorporating underlying molecular mechanisms for anaerobic metabolism in Escherichia coli. Mol Biosyst (2014) 0.76