Published in Cell on January 31, 1986
Identification of a myocyte nuclear factor that binds to the muscle-specific enhancer of the mouse muscle creatine kinase gene. Mol Cell Biol (1989) 3.98
A group of scs elements function as domain boundaries in an enhancer-blocking assay. Mol Cell Biol (1992) 3.76
Human telomeres are attached to the nuclear matrix. EMBO J (1992) 3.08
Boundaries of somatic mutation in rearranged immunoglobulin genes: 5' boundary is near the promoter, and 3' boundary is approximately 1 kb from V(D)J gene. J Exp Med (1990) 2.98
The matrix attachment regions of the chicken lysozyme gene co-map with the boundaries of the chromatin domain. EMBO J (1988) 2.66
Locations and contexts of sequences that hybridize to poly(dG-dT).(dC-dA) in mammalian ribosomal DNAs and two X-linked genes. Nucleic Acids Res (1988) 2.64
The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development. Genes Dev (2000) 2.49
Disruption of nuclear lamin organization alters the distribution of replication factors and inhibits DNA synthesis. J Cell Biol (1997) 2.41
Preferential, cooperative binding of DNA topoisomerase II to scaffold-associated regions. EMBO J (1989) 2.33
SAR-dependent mobilization of histone H1 by HMG-I/Y in vitro: HMG-I/Y is enriched in H1-depleted chromatin. EMBO J (1993) 2.27
Topoisomerase II: A specific marker for cell proliferation. J Cell Biol (1986) 2.22
SUMO modification of a novel MAR-binding protein, SATB2, modulates immunoglobulin mu gene expression. Genes Dev (2003) 2.17
Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossovers. EMBO J (1990) 2.16
Topological challenges to DNA replication: conformations at the fork. Proc Natl Acad Sci U S A (2001) 2.11
The DNase I sensitive domain of the chicken lysozyme gene spans 24 kb. Nucleic Acids Res (1986) 2.08
DNA-binding and chromatin localization properties of CHD1. Mol Cell Biol (1995) 2.07
Long-range interactions between three transcriptional enhancers, active Vkappa gene promoters, and a 3' boundary sequence spanning 46 kilobases. Mol Cell Biol (2005) 2.06
The 5'-HS4 chicken beta-globin insulator is a CTCF-dependent nuclear matrix-associated element. Proc Natl Acad Sci U S A (2004) 2.05
The chicken lysozyme 5' matrix attachment region increases transcription from a heterologous promoter in heterologous cells and dampens position effects on the expression of transfected genes. Mol Cell Biol (1990) 1.98
Nuclear scaffold attachment sites in the human globin gene complexes. EMBO J (1988) 1.97
A consensus sequence for cleavage by vertebrate DNA topoisomerase II. Nucleic Acids Res (1988) 1.93
Transcription-induced nucleosome 'splitting': an underlying structure for DNase I sensitive chromatin. EMBO J (1991) 1.93
In vivo topoisomerase II cleavage of the Drosophila histone and satellite III repeats: DNA sequence and structural characteristics. EMBO J (1992) 1.91
Dysfunction of chromosomal loop attachment sites: illegitimate recombination linked to matrix association regions and topoisomerase II. Proc Natl Acad Sci U S A (1989) 1.91
Detection, sequence patterns and function of unusual DNA structures. Nucleic Acids Res (1986) 1.86
SAF-Box, a conserved protein domain that specifically recognizes scaffold attachment region DNA. Mol Cell Biol (2000) 1.84
Binding of matrix attachment regions to lamin polymers involves single-stranded regions and the minor groove. Mol Cell Biol (1994) 1.76
Characterization of SAF-A, a novel nuclear DNA binding protein from HeLa cells with high affinity for nuclear matrix/scaffold attachment DNA elements. EMBO J (1992) 1.75
Matrix attachment regions are positioned near replication initiation sites, genes, and an interamplicon junction in the amplified dihydrofolate reductase domain of Chinese hamster ovary cells. Mol Cell Biol (1988) 1.73
Negative regulation contributes to tissue specificity of the immunoglobulin heavy-chain enhancer. Mol Cell Biol (1987) 1.71
DNA topoisomerase II alpha is the major chromosome protein recognized by the mitotic phosphoprotein antibody MPM-2. Proc Natl Acad Sci U S A (1993) 1.66
Characterization of the dead ringer gene identifies a novel, highly conserved family of sequence-specific DNA-binding proteins. Mol Cell Biol (1996) 1.58
Replication forks are associated with the nuclear matrix. Nucleic Acids Res (1990) 1.55
Cell cycle control of higher-order chromatin assembly around naked DNA in vitro. J Cell Biol (1991) 1.54
Three breakpoints of variant t(2;8) translocations in Burkitt's lymphoma cells fall within a region 140 kilobases distal from c-myc. Mol Cell Biol (1989) 1.52
DNA cleavage within the MLL breakpoint cluster region is a specific event which occurs as part of higher-order chromatin fragmentation during the initial stages of apoptosis. Mol Cell Biol (1997) 1.51
Nuclear scaffolds and scaffold-attachment regions in higher plants. Proc Natl Acad Sci U S A (1991) 1.51
The matrix attachment region-binding protein SATB1 participates in negative regulation of tissue-specific gene expression. Mol Cell Biol (1997) 1.50
The nuclear matrix protein NMP-1 is the transcription factor YY1. Proc Natl Acad Sci U S A (1995) 1.49
Nuclear factors bind to regulatory regions of the mouse kappa immunoglobulin gene. Nucleic Acids Res (1986) 1.48
SATB1 cleavage by caspase 6 disrupts PDZ domain-mediated dimerization, causing detachment from chromatin early in T-cell apoptosis. Mol Cell Biol (2001) 1.48
A hotspot for novel amplification joints in a mosaic of Alu-like repeats and palindromic A + T-rich DNA. EMBO J (1987) 1.47
Osteocalcin gene promoter-binding factors are tissue-specific nuclear matrix components. Proc Natl Acad Sci U S A (1993) 1.46
Nucleolin is a matrix attachment region DNA-binding protein that specifically recognizes a region with high base-unpairing potential. Mol Cell Biol (1995) 1.46
Cells strongly expressing Ig(kappa) transgenes show clonal recruitment of hypermutation: a role for both MAR and the enhancers. EMBO J (1997) 1.46
Deletion of the immunoglobulin kappa chain intron enhancer abolishes kappa chain gene rearrangement in cis but not lambda chain gene rearrangement in trans. EMBO J (1993) 1.44
Function of sperm chromatin structural elements in fertilization and development. Mol Hum Reprod (2009) 1.44
Recombination and transcription of the endogenous Ig heavy chain locus is effected by the Ig heavy chain intronic enhancer core region in the absence of the matrix attachment regions. Proc Natl Acad Sci U S A (1999) 1.44
Chromosome 8 breakpoint far 3' of the c-myc oncogene in a Burkitt's lymphoma 2;8 variant translocation is equivalent to the murine pvt-1 locus. EMBO J (1986) 1.42
Self-association of the Drosophila zeste protein is responsible for transvection effects. EMBO J (1990) 1.41
In vivo functional analysis of in vitro protein binding sites in the immunoglobulin heavy chain enhancer. Nucleic Acids Res (1988) 1.39
An enhancer-blocking element between alpha and delta gene segments within the human T cell receptor alpha/delta locus. Proc Natl Acad Sci U S A (1997) 1.38
Gene targeting in the Ig kappa locus: efficient generation of lambda chain-expressing B cells, independent of gene rearrangements in Ig kappa. EMBO J (1993) 1.38
The genomic sequences bound to special AT-rich sequence-binding protein 1 (SATB1) in vivo in Jurkat T cells are tightly associated with the nuclear matrix at the bases of the chromatin loops. J Cell Biol (1998) 1.37
The novel SAR-binding domain of scaffold attachment factor A (SAF-A) is a target in apoptotic nuclear breakdown. EMBO J (1997) 1.37
Dynamic changes in the higher-level chromatin organization of specific sequences revealed by in situ hybridization to nuclear halos. J Cell Biol (1994) 1.37
Chromatin loop domain organization within the 4q35 locus in facioscapulohumeral dystrophy patients versus normal human myoblasts. Proc Natl Acad Sci U S A (2006) 1.32
Identification of a T-cell-specific transcriptional enhancer located 3' of C gamma 1 in the murine T-cell receptor gamma locus. Proc Natl Acad Sci U S A (1991) 1.30
Yeast telomere repeat sequence (TRS) improves circular plasmid segregation, and TRS plasmid segregation involves the RAP1 gene product. Mol Cell Biol (1992) 1.29
Nuclear matrix associated DNA is preferentially repaired in normal human fibroblasts, exposed to a low dose of ultraviolet light but not in Cockayne's syndrome fibroblasts. Nucleic Acids Res (1988) 1.29
Purification and molecular cloning of the scaffold attachment factor B (SAF-B), a novel human nuclear protein that specifically binds to S/MAR-DNA. Nucleic Acids Res (1996) 1.28
Position-independent transgene expression mediated by boundary elements from the apolipoprotein B chromatin domain. Mol Cell Biol (1995) 1.26
Silencing of the expression of the immunoglobulin kappa gene in non-B cells. Mol Cell Biol (1991) 1.24
Transcriptional enhancers in the HLA-DQ subregion. Mol Cell Biol (1987) 1.24
In vivo analysis of scaffold-associated regions in Drosophila: a synthetic high-affinity SAR binding protein suppresses position effect variegation. EMBO J (1998) 1.23
Cux/CDP homeoprotein is a component of NF-muNR and represses the immunoglobulin heavy chain intronic enhancer by antagonizing the bright transcription activator. Mol Cell Biol (1999) 1.21
Drosophila scaffold-attached regions bind nuclear scaffolds and can function as ARS elements in both budding and fission yeasts. Mol Cell Biol (1990) 1.20
Molecular mechanism in the formation of a human ring chromosome 21. Proc Natl Acad Sci U S A (1989) 1.19
Nuclear matrix attachment occurs in several regions of the IgH locus. Nucleic Acids Res (1990) 1.17
A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: implications for the facio-scapulo-humeral dystrophy. Genome Res (2007) 1.17
ATP-independent type II topoisomerase from trypanosomes. Proc Natl Acad Sci U S A (1986) 1.16
A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1. Mol Cell Biol (1994) 1.16
DNA end-independent activation of DNA-PK mediated via association with the DNA-binding protein C1D. Genes Dev (1998) 1.16
Sequence-specific DNA-binding proteins are components of a nuclear matrix-attachment site. Proc Natl Acad Sci U S A (1992) 1.16
Genomic DNA breakpoints in AML1/RUNX1 and ETO cluster with topoisomerase II DNA cleavage and DNase I hypersensitive sites in t(8;21) leukemia. Proc Natl Acad Sci U S A (2002) 1.16
Different topoisomerase II antitumor drugs direct similar specific long-range fragmentation of an amplified c-MYC gene locus in living cells and in high-salt-extracted nuclei. Proc Natl Acad Sci U S A (1995) 1.16
In vitro transcription of eukaryotic genes is affected differently by the degree of DNA supercoiling. Proc Natl Acad Sci U S A (1988) 1.15
A nuclear matrix attachment region organizes the Epstein-Barr viral plasmid in Raji cells into a single DNA domain. EMBO J (1992) 1.15
Functional role of a highly repetitive DNA sequence in anchorage of the mouse genome. Nucleic Acids Res (1988) 1.14
DNA sequence requirements for replication of polyomavirus DNA in vivo and in vitro. Mol Cell Biol (1987) 1.14
Early rearrangements of genes encoding murine immunoglobulin kappa chains, unlike genes encoding heavy chains, use variable gene segments dispersed throughout the locus. Proc Natl Acad Sci U S A (1989) 1.14
Supercoiling-dependent sequence specificity of mammalian DNA methyltransferase. Nucleic Acids Res (1987) 1.14
Scaffold/matrix attachment region elements interact with a p300-scaffold attachment factor A complex and are bound by acetylated nucleosomes. Mol Cell Biol (2002) 1.13
Matrix attachment regions and structural colinearity in the genomes of two grass species. Nucleic Acids Res (1998) 1.13
Topoisomerase II: a fitted mechanism for the chromatin landscape. Nucleic Acids Res (2008) 1.13
SARs stimulate but do not confer position independent gene expression. Nucleic Acids Res (1994) 1.13
Modular sequence elements associated with origin regions in eukaryotic chromosomal DNA. Nucleic Acids Res (1994) 1.13
Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum. Plant Cell (2000) 1.13
The transcriptional enhancer of the pea plastocyanin gene associates with the nuclear matrix and regulates gene expression through histone acetylation. Plant Cell (2003) 1.12
Identification of a matrix-associated region 5' of an immunoglobulin heavy chain variable region gene. Mol Cell Biol (1991) 1.11
Transcriptional insulation of the human keratin 18 gene in transgenic mice. Mol Cell Biol (1993) 1.11
DNA topoisomerase II cleaves at specific sites in the 5' flanking region of c-fos proto-oncogenes in vitro. EMBO J (1986) 1.11
AGAMOUS controls GIANT KILLER, a multifunctional chromatin modifier in reproductive organ patterning and differentiation. PLoS Biol (2009) 1.10
Human matrix attachment regions insulate transgene expression from chromosomal position effects in Drosophila melanogaster. Mol Cell Biol (1998) 1.10
Topoisomerase IIbeta activates a subset of neuronal genes that are repressed in AT-rich genomic environment. PLoS One (2008) 1.10
Induction of topoisomerase II-mediated DNA cleavage by the plant naphthoquinones plumbagin and shikonin. Antimicrob Agents Chemother (1992) 1.09
Novel protein-DNA interactions associated with increased immunoglobulin transcription in response to antigen plus interleukin-5. Mol Cell Biol (1991) 1.09
Dissecting a locus control region: facilitation of enhancer function by extended enhancer-flanking sequences. Mol Cell Biol (1995) 1.08
Somatic mutation in constant regions of mouse lambda 1 light chains. Proc Natl Acad Sci U S A (1991) 1.08
Detection of DNA domains in Drosophila, human, and plant chromosomes possessing mainly 50- to 150-kilobase stretches of DNA. Proc Natl Acad Sci U S A (1992) 1.08
Nuclease hypersensitive sites in chromatin. Annu Rev Biochem (1988) 13.48
The ubiquitous potential Z-forming sequence of eucaryotes, (dT-dG)n . (dC-dA)n, is not detectable in the genomes of eubacteria, archaebacteria, or mitochondria. Mol Cell Biol (1986) 3.00
Chromatin structure of the potential Z-forming sequence (dT-dG)n X (dC-dA)n. Evidence for an "alternating-B" conformation. J Mol Biol (1985) 2.58
The 40-kDa subunit of DNA fragmentation factor induces DNA fragmentation and chromatin condensation during apoptosis. Proc Natl Acad Sci U S A (1998) 2.38
Partial purification of the template-active fraction of chromatin: a preliminary report. Proc Natl Acad Sci U S A (1974) 2.25
The enhancer of the immunoglobulin heavy chain locus is flanked by presumptive chromosomal loop anchorage elements. J Biol Chem (1987) 2.15
Differentiation-dependent chromatin alterations precede and accompany transcription of immunoglobulin light chain genes. J Biol Chem (1984) 1.99
Transcription-induced nucleosome 'splitting': an underlying structure for DNase I sensitive chromatin. EMBO J (1991) 1.93
Dysfunction of chromosomal loop attachment sites: illegitimate recombination linked to matrix association regions and topoisomerase II. Proc Natl Acad Sci U S A (1989) 1.91
Points of contact between histone H1 and the histone octamer. Proc Natl Acad Sci U S A (1980) 1.74
Subunit structures of different electrophoretic forms of nucleosomes. J Biol Chem (1980) 1.61
Action of recombinant human apoptotic endonuclease G on naked DNA and chromatin substrates: cooperation with exonuclease and DNase I. J Biol Chem (2001) 1.53
Two-dimensional electrophoretic analysis of polynucleosomes. J Biol Chem (1977) 1.50
Sharp boundaries demarcate the chromatin structure of a yeast heat-shock gene. J Mol Biol (1987) 1.47
Reassociation of histone H1 with nucleosomes. J Biol Chem (1979) 1.44
Nitrate reductase and soluble cytochrome c in Spirillum itersonii. J Bacteriol (1970) 1.38
Chromosomal loop anchorage sites appear to be evolutionarily conserved. FEBS Lett (1986) 1.38
Depletion of RUNX1/ETO in t(8;21) AML cells leads to genome-wide changes in chromatin structure and transcription factor binding. Leukemia (2012) 1.35
Basal-level expression of the yeast HSP82 gene requires a heat shock regulatory element. Mol Cell Biol (1989) 1.33
5-methylcytosine is localized in nucleosomes that contain histone H1. Proc Natl Acad Sci U S A (1983) 1.32
Cleavage preferences of the apoptotic endonuclease DFF40 (caspase-activated DNase or nuclease) on naked DNA and chromatin substrates. J Biol Chem (2000) 1.32
Transcription termination and chromatin structure of the active immunoglobulin kappa gene locus. J Biol Chem (1986) 1.27
Signals for activation of the GM-CSF promoter and enhancer in T cells. Crit Rev Immunol (1997) 1.25
Positive DNA supercoiling generates a chromatin conformation characteristic of highly active genes. Proc Natl Acad Sci U S A (1991) 1.24
Varigated chromatin structures of mouse ribosomal RNA genes. J Mol Biol (1983) 1.24
Functional organization of the mammalian genome. Cold Spring Harb Symp Quant Biol (1974) 1.20
DNA supercoiling in chromatin structure and gene expression. Crit Rev Eukaryot Gene Expr (1992) 1.19
Immunoglobulin kappa gene expression after stable integration. I. Role of the intronic MAR and enhancer in plasmacytoma cells. J Biol Chem (1989) 1.18
Immunoglobulin kappa gene expression after stable integration. II. Role of the intronic MAR and enhancer in transgenic mice. J Biol Chem (1989) 1.16
Multiple signals are required for function of the human granulocyte-macrophage colony-stimulating factor gene promoter in T cells. J Immunol (1995) 1.13
Uncoupling gene activity from chromatin structure: promoter mutations can inactivate transcription of the yeast HSP82 gene without eliminating nucleosome-free regions. Proc Natl Acad Sci U S A (1992) 1.13
Histone molar ratios among different electrophoretic forms of mono- and dinucleosomes. J Biol Chem (1979) 1.13
Electrophoretic analyses of nucleosomes and other protein-DNA complexes. Methods Enzymol (1989) 1.11
Reconstitution of T cell-specific transcription directed by composite NFAT/Oct elements. J Immunol (2000) 1.11
The nuclease sensitivity of active genes. Nucleic Acids Res (1983) 1.11
Synthesis, assembly, and localization of periplasmic cytochrome c. J Biol Chem (1972) 1.09
Selective release of proteins from Spirillum itersonii by tris (hydroxymethyl) aminomethane and ethylenediaminetetraacetate. J Bacteriol (1971) 1.08
Overall pathway of mononucleosome production. J Biol Chem (1979) 1.08
Identification within the simian virus 40 genome of a chromosomal loop attachment site that contains topoisomerase II cleavage sites. J Virol (1990) 1.07
Purification and properties of a neutral protease from rat liver chromatin. Biochemistry (1974) 1.07
Vacuum blotting: a simple method for transferring DNA from sequencing gels to nylon membranes. Gene (1988) 1.06
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Generation of an improved luciferase reporter gene plasmid that employs a novel mechanism for high-copy replication. Plasmid (2000) 1.05
Transcriptional regulation of mouse granulocyte-macrophage colony-stimulating factor/IL-3 locus. J Immunol (1995) 1.05
A NF-kappa B/Sp1 region is essential for chromatin remodeling and correct transcription of a human granulocyte-macrophage colony-stimulating factor transgene. J Immunol (2001) 1.04
Regulation of the human apoptotic DNase/RNase endonuclease G: involvement of Hsp70 and ATP. Apoptosis (2005) 1.04
Protein:DNA interactions at chromosomal loop attachment sites. Genome (1989) 1.04
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Nonheme iron proteins. IV. Structural studies of Micrococcus aerogenes rubredoxin. Biochemistry (1968) 1.02
A T cell-specific enhancer in the interleukin-3 locus is activated cooperatively by Oct and NFAT elements within a DNase I-hypersensitive site. Immunity (1997) 1.02
The active immunoglobulin kappa chain gene is packaged by non-ubiquitin-conjugated nucleosomes. Proc Natl Acad Sci U S A (1986) 1.01
The effect of salt extraction on the structure of transcriptionally active genes; evidence for a DNAseI-sensitive structure which could be dependent on chromatin structure at levels higher than the 30 nm fibre. Nucleic Acids Res (1985) 0.99
Roles of the major apoptotic nuclease-DNA fragmentation factor-in biology and disease. Cell Mol Life Sci (2009) 0.97
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Ionic and cofactor requirements for the activity of the apoptotic endonuclease DFF40/CAD. Mol Cell Biochem (2001) 0.93
Yeast calmodulin and a conserved nuclear protein participate in the in vivo binding of a matrix association region. Proc Natl Acad Sci U S A (1993) 0.93
Changes in chromatin proteins during liver regeneration. J Biol Chem (1974) 0.93
Aberrant expression of CD19 in AML with t(8;21) involves a poised chromatin structure and PAX5. Oncogene (2010) 0.92
Immunoglobulin kappa gene enhancers synergistically activate gene expression but independently determine chromatin structure. J Biol Chem (1992) 0.91
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Evidence that the Igkappa gene MAR regulates the probability of premature V-J joining and somatic hypermutation. J Immunol (1999) 0.90
In vitro chromatin assembly of the HIV-1 promoter. ATP-dependent polar repositioning of nucleosomes by Sp1 and NFkappaB. J Biol Chem (1997) 0.89
Demonstration of an S1-nuclease sensitive site near the human beta-globin gene, and its protection by HMG 1 and 2. Biochem Biophys Res Commun (1983) 0.88
Template topology and transcription: chromatin templates relaxed by localized linearization are transcriptionally active in yeast. Mol Cell Biol (1997) 0.87
Partial purification of low molecular weight non-suppressible insulin-like activity from human plasma: demonstration of the presence of multiple forms. J Endocrinol (1980) 0.86
A targeted kappa immunoglobulin gene containing a deletion of the nuclear matrix association region exhibits spontaneous hyper-recombination in pre-B cells. Mol Immunol (1998) 0.86
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Two forms of rat liver histone H3. FEBS Lett (1976) 0.85
Transferring DNA from electrophoretically resolved nucleosomes to diazobenzyloxymethyl cellulose: properties of nucleosomes along mouse satellite DNA. Nucleic Acids Res (1982) 0.84
Transcriptional regulation and chromatin structure of the human CD34 gene promoter region. Blood (1994) 0.83
A method for mapping the distributions of modified and variant histones among mono- and polynucleosomes. J Biol Chem (1978) 0.83
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Comparisons of the structures of the chromosomal high mobility group proteins HMG1 and HMG2 prepared under conditions of neutral and acidic pH. Biochim Biophys Acta (1983) 0.79
Mutations that affect nuclear organization in yeast. Methods Cell Biol (1991) 0.78
Histone H3 disulfide reactions in interphase, mitotic, and native chromatin. J Biol Chem (1977) 0.78
Nucleotide sequence of the intron of the germline human kappa immunoglobulin gene connecting the J and C regions reveals a matrix association region (MAR) next to the enhancer. Nucleic Acids Res (1992) 0.78
Yeast artificial chromosome contigs reveal that distal variable-region genes reside at least 3 megabases from the joining regions in the murine immunoglobulin kappa locus. Proc Natl Acad Sci U S A (1995) 0.78
Nucleosomes and regulation of gene expression. Structure of the HIV-1 5'LTR. Acta Biochim Pol (1998) 0.76
Accurate quantification of expression of transgenes marked with restriction endonuclease site polymorphisms by RT-PCR. Biotechniques (1998) 0.75
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Histone phosphorylation during liver regeneration. Biochem Biophys Res Commun (1976) 0.75