Published in Annu Rev Biochem on January 01, 1985
Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res (1987) 25.34
Protein phosphorylation and regulation of adaptive responses in bacteria. Microbiol Rev (1989) 20.50
Analysis of E. coli promoter sequences. Nucleic Acids Res (1987) 14.12
Intrinsic noise in gene regulatory networks. Proc Natl Acad Sci U S A (2001) 12.06
Precise insertion of antibiotic resistance determinants into Tn21-like transposons: nucleotide sequence of the OXA-1 beta-lactamase gene. Proc Natl Acad Sci U S A (1987) 5.28
Compilation and analysis of Bacillus subtilis sigma A-dependent promoter sequences: evidence for extended contact between RNA polymerase and upstream promoter DNA. Nucleic Acids Res (1995) 4.58
Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation. Nucleic Acids Res (2001) 3.77
Characterization of invasion plasmid antigen genes (ipaBCD) from Shigella flexneri. Proc Natl Acad Sci U S A (1988) 3.65
Outer surface proteins E and F of Borrelia burgdorferi, the agent of Lyme disease. Infect Immun (1994) 3.59
The FlhD/FlhC complex, a transcriptional activator of the Escherichia coli flagellar class II operons. J Bacteriol (1994) 3.52
Cloning and sequencing of the alcohol dehydrogenase II gene from Zymomonas mobilis. J Bacteriol (1987) 3.49
Nucleotide excision repair in Escherichia coli. Microbiol Rev (1990) 3.39
Multiple procaryotic ribonucleic acid polymerase sigma factors. Microbiol Rev (1986) 3.25
Divergent promoters, a common form of gene organization. Microbiol Rev (1988) 3.25
RNA polymerase-promoter interactions: the comings and goings of RNA polymerase. J Bacteriol (1998) 3.16
Secondary sigma factor controls transcription of flagellar and chemotaxis genes in Escherichia coli. Proc Natl Acad Sci U S A (1989) 3.10
Single-molecule imaging of RNA polymerase-DNA interactions in real time. Biophys J (1999) 3.03
Quantitative analysis of the relationship between nucleotide sequence and functional activity. Nucleic Acids Res (1986) 3.02
The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes. J Bacteriol (1997) 2.96
Nucleotide sequence of the Rickettsia prowazekii citrate synthase gene. J Bacteriol (1987) 2.94
Dissection of IncP conjugative plasmid transfer: definition of the transfer region Tra2 by mobilization of the Tra1 region in trans. J Bacteriol (1992) 2.91
Mutational analysis of an archaebacterial promoter: essential role of a TATA box for transcription efficiency and start-site selection in vitro. Proc Natl Acad Sci U S A (1990) 2.75
Molecular cloning, sequencing, and identification of a metalloprotease gene from Listeria monocytogenes that is species specific and physically linked to the listeriolysin gene. Infect Immun (1991) 2.65
Pseudomonas aeruginosa infection in cystic fibrosis: nucleotide sequence and transcriptional regulation of the algD gene. Nucleic Acids Res (1987) 2.63
Cloning of 1,2-dichloroethane degradation genes of Xanthobacter autotrophicus GJ10 and expression and sequencing of the dhlA gene. J Bacteriol (1989) 2.59
Identification of type III secreted products of the Pseudomonas aeruginosa exoenzyme S regulon. J Bacteriol (1997) 2.58
Untwist and shout: a heavy metal-responsive transcriptional regulator. J Bacteriol (1992) 2.49
Molecular characterization and expression of p23 (OspC) from a North American strain of Borrelia burgdorferi. Infect Immun (1993) 2.36
Analyses of the DNA-binding and transcriptional activation properties of ExsA, the transcriptional activator of the Pseudomonas aeruginosa exoenzyme S regulon. J Bacteriol (1995) 2.32
Transcriptional analysis of the Pseudomonas aeruginosa exoenzyme S structural gene. J Bacteriol (1995) 2.27
The effects of mutations in the ant promoter of phage P22 depend on context. Genetics (1988) 2.25
Anatomy of Escherichia coli sigma70 promoters. Nucleic Acids Res (2006) 2.25
RAP30/74: a general initiation factor that binds to RNA polymerase II. Mol Cell Biol (1988) 2.16
Sequence and transcriptional start site of the Pseudomonas aeruginosa outer membrane porin protein F gene. J Bacteriol (1988) 2.13
Identification and analysis of 'extended -10' promoters in Escherichia coli. Nucleic Acids Res (2003) 2.13
Opening of an RNA polymerase II promoter occurs in two distinct steps and requires the basal transcription factors IIE and IIH. EMBO J (1996) 2.13
Visualization and quantitative analysis of complex formation between E. coli RNA polymerase and an rRNA promoter in vitro. Nucleic Acids Res (1988) 2.10
Isolation, characterization, and DNA sequence analysis of an AAC(6')-II gene from Pseudomonas aeruginosa. Antimicrob Agents Chemother (1989) 2.08
Molecular characterization of the dnaK gene region of Clostridium acetobutylicum, including grpE, dnaJ, and a new heat shock gene. J Bacteriol (1992) 2.06
Construction of an in vitro bistable circuit from synthetic transcriptional switches. Mol Syst Biol (2006) 2.00
Relatedness of an RNA-binding motif in human immunodeficiency virus type 1 TAR RNA-binding protein TRBP to human P1/dsI kinase and Drosophila staufen. Mol Cell Biol (1993) 1.98
Nucleotide sequence analysis of a type 1 fimbrial gene of Streptococcus sanguis FW213. Infect Immun (1989) 1.97
Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA. Proc Natl Acad Sci U S A (2006) 1.91
Hierarchies of base pair preferences in the P22 ant promoter. J Bacteriol (1991) 1.89
DNA sequence and expression of the 36-kilodalton outer membrane protein gene of Brucella abortus. Infect Immun (1989) 1.88
Transcriptional organization of the trans-regulatory locus which controls exoenzyme S synthesis in Pseudomonas aeruginosa. J Bacteriol (1994) 1.82
Cloning, sequencing, and molecular analysis of the groESL operon of Clostridium acetobutylicum. J Bacteriol (1992) 1.82
DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study. Nucleic Acids Res (2000) 1.79
The transition from transcriptional initiation to elongation. Curr Opin Genet Dev (2008) 1.78
Overproduction and dissection of proteins by the expression-cassette polymerase chain reaction. Proc Natl Acad Sci U S A (1990) 1.77
Recombinant system for overexpression of cholera toxin B subunit in Vibrio cholerae as a basis for vaccine development. Proc Natl Acad Sci U S A (1989) 1.74
Control of rRNA synthesis in Escherichia coli: a systems biology approach. Microbiol Mol Biol Rev (2004) 1.73
Induction and repression of the urea amidolyase gene in Saccharomyces cerevisiae. Mol Cell Biol (1986) 1.72
Extended Region of Nodulation Genes in Rhizobium meliloti 1021. II. Nucleotide Sequence, Transcription Start Sites and Protein Products. Genetics (1987) 1.71
A new target for CRP action at the malT promoter. EMBO J (1987) 1.71
Sequence analysis of the Escherichia coli dnaE gene. J Bacteriol (1987) 1.71
Modulation of transcription by DNA supercoiling: a deletion analysis of the Escherichia coli gyrA and gyrB promoters. Proc Natl Acad Sci U S A (1987) 1.70
Identification of base pairs in the outside end of insertion sequence IS50 that are needed for IS50 and Tn5 transposition. Proc Natl Acad Sci U S A (1987) 1.70
Fusions of the Escherichia coli gyrA and gyrB control regions to the galactokinase gene are inducible by coumermycin treatment. J Bacteriol (1987) 1.66
Purification, cloning, and sequence of outer membrane protein P1 of Haemophilus influenzae type b. Infect Immun (1988) 1.66
Information processing by RNA polymerase: recognition of regulatory signals during RNA chain elongation. J Bacteriol (1998) 1.63
Promoter selectivity of Escherichia coli RNA polymerase: effect of base substitutions in the promoter -35 region on promoter strength. Nucleic Acids Res (1990) 1.63
Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro. Proc Natl Acad Sci U S A (1995) 1.60
Genetic and biochemical analysis of the MetR activator-binding site in the metE metR control region of Salmonella typhimurium. J Bacteriol (1989) 1.60
Identification of promoter mutants defective in growth-rate-dependent regulation of rRNA transcription in Escherichia coli. J Bacteriol (1989) 1.59
Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variants. J Bacteriol (1989) 1.58
Factor substitution in a human HSP70 gene promoter: TATA-dependent and TATA-independent interactions. Mol Cell Biol (1990) 1.58
DNA sequence of a Fibrobacter succinogenes mixed-linkage beta-glucanase (1,3-1,4-beta-D-glucan 4-glucanohydrolase) gene. J Bacteriol (1990) 1.56
The tryptophan-specific permease gene, mtr, is differentially regulated by the tryptophan and tyrosine repressors in Escherichia coli K-12. J Bacteriol (1991) 1.55
Effects of plasmid propagation of a sporulation promoter on promoter utilization and sporulation in Bacillus subtilis. J Bacteriol (1987) 1.53
Structural features of an influenza virus promoter and their implications for viral RNA synthesis. Proc Natl Acad Sci U S A (2001) 1.53
Cloning, sequence, and expression of a lipase gene from Pseudomonas cepacia: lipase production in heterologous hosts requires two Pseudomonas genes. J Bacteriol (1991) 1.52
Sequence analysis and expression in Escherichia coli of the hyaluronidase gene of Streptococcus pyogenes bacteriophage H4489A. Infect Immun (1989) 1.50
MalT, the regulatory protein of the Escherichia coli maltose system, is an ATP-dependent transcriptional activator. EMBO J (1989) 1.50
Characterization of a two-gene locus from Bartonella bacilliformis associated with the ability to invade human erythrocytes. Infect Immun (1995) 1.49
Molecular cloning, expression, and primary sequence of outer membrane protein P2 of Haemophilus influenzae type b. Infect Immun (1989) 1.48
Characterization of degQ and degS, Escherichia coli genes encoding homologs of the DegP protease. J Bacteriol (1996) 1.46
The sortase SrtA of Listeria monocytogenes is involved in processing of internalin and in virulence. Infect Immun (2002) 1.46
Replication origins of single-stranded-DNA plasmid pUB110. J Bacteriol (1989) 1.45
The influence of promoter architectures and regulatory motifs on gene expression in Escherichia coli. PLoS One (2014) 1.44
NusA protein is necessary and sufficient in vitro for phage lambda N gene product to suppress a rho-independent terminator placed downstream of nutL. Proc Natl Acad Sci U S A (1988) 1.44
The organization of open complexes between Escherichia coli RNA polymerase and DNA fragments carrying promoters either with or without consensus -35 region sequences. Biochem J (1990) 1.43
Overlapping promoters and their control in Escherichia coli: the gal case. Proc Natl Acad Sci U S A (1986) 1.43
Effects of DNA gyrase inhibitors in Escherichia coli topoisomerase I mutants. J Bacteriol (1986) 1.43
A mer-lux transcriptional fusion for real-time examination of in vivo gene expression kinetics and promoter response to altered superhelicity. J Bacteriol (1992) 1.43
Delineation of the regulatory region sequences of Agrobacterium tumefaciens virB operon. Nucleic Acids Res (1989) 1.43
High-level heterologous expression and secretion in rapidly growing nonpathogenic mycobacteria of four major Mycobacterium tuberculosis extracellular proteins considered to be leading vaccine candidates and drug targets. Infect Immun (1997) 1.42
Peptide nucleic acid.DNA strand displacement loops as artificial transcription promoters. Proc Natl Acad Sci U S A (1994) 1.42
Alcohol dehydrogenase gene from Alcaligenes eutrophus: subcloning, heterologous expression in Escherichia coli, sequencing, and location of Tn5 insertions. J Bacteriol (1988) 1.42
Promoters selected from random DNA sequences. Proc Natl Acad Sci U S A (1986) 1.41
Identification of an autonomously initiating RNA polymerase III holoenzyme containing a novel factor that is selectively inactivated during protein synthesis inhibition. Genes Dev (1997) 1.40
RNA polymerase idling and clearance in gal promoters: use of supercoiled minicircle DNA template made in vivo. Proc Natl Acad Sci U S A (1993) 1.40
Chlamydial gene encoding a 70-kilodalton antigen in Escherichia coli: analysis of expression signals and identification of the gene product. J Bacteriol (1989) 1.39
Identification, cloning, and expression of the CAMP factor gene (cfa) of group A streptococci. Infect Immun (1999) 1.39
Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase. RNA (1998) 1.37
Hepatitis C virus RNA synthesis in a cell-free system isolated from replicon-containing hepatoma cells. J Virol (2003) 1.36
RNA polymerase II-associated proteins are required for a DNA conformation change in the transcription initiation complex. Proc Natl Acad Sci U S A (1991) 1.36
Binding and kinetic properties of HIV-1 reverse transcriptase markedly differ during initiation and elongation of reverse transcription. EMBO J (1996) 1.36
Nucleotide sequence and expression in Escherichia coli of the Lactococcus lactis citrate permease gene. J Bacteriol (1990) 1.35
Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res (1983) 38.72
Escherichia coli promoter sequences predict in vitro RNA polymerase selectivity. Nucleic Acids Res (1984) 8.00
Rate-limiting steps in RNA chain initiation. Proc Natl Acad Sci U S A (1980) 5.71
Studies on the selectivity of DNA precipitation by spermine. Nucleic Acids Res (1981) 4.82
IS10 transposition is regulated by DNA adenine methylation. Cell (1985) 4.41
Three promoters near the termini of IS10: pIN, pOUT, and pIII. Cell (1983) 3.92
Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucleic Acids Res (1990) 3.46
In vitro comparison of initiation properties of bacteriophage lambda wild-type PR and x3 mutant promoters. Proc Natl Acad Sci U S A (1980) 3.07
A steady state assay for the RNA polymerase initiation reaction. J Biol Chem (1978) 2.86
A kinetic analysis of coupled enzyme assays. Biochemistry (1969) 2.76
Mechanism of activation of transcription initiation from the lambda PRM promoter. J Mol Biol (1982) 2.75
Mechanism of CRP-cAMP activation of lac operon transcription initiation activation of the P1 promoter. J Mol Biol (1984) 2.74
Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps. Biochemistry (1985) 2.71
On the mechanism of rifampicin inhibition of RNA synthesis. J Biol Chem (1978) 2.55
Characterization of ribonucleic acid polymerase-T7 promoter binary complexes. Biochemistry (1980) 2.22
Dual promoter control of the Escherichia coli lactose operon. Cell (1984) 2.14
Characterization in vitro of the effect of spacer length on the activity of Escherichia coli RNA polymerase at the TAC promoter. J Biol Chem (1985) 1.87
Analysis of the occurrence of promoter-sites in DNA. Nucleic Acids Res (1986) 1.86
Role of the sigma subunit of Escherichia coli RNA polymerase in initiation. II. Release of sigma from ternary complexes. J Biol Chem (1980) 1.71
Bacteriophage P22 Mnt repressor. DNA binding and effects on transcription in vitro. J Mol Biol (1987) 1.59
The steady state kinetic parameters and non-processivity of Escherichia coli deoxyribonucleic acid polymerase I. J Biol Chem (1975) 1.48
A cII-dependent promoter is located within the Q gene of bacteriophage lambda. Proc Natl Acad Sci U S A (1985) 1.46
Characterization of promoter containing DNA fragments based on the abortive initiation reaction of Escherichia coli RNA polymerase. J Biol Chem (1980) 1.36
Changing the mechanism of transcriptional activation by phage lambda repressor. Proc Natl Acad Sci U S A (1997) 1.35
The effect of a lambda repressor mutation on the activation of transcription initiation from the lambda PRM promoter. Cell (1983) 1.29
The kinetics and processivity of nucleic acid polymerases. Methods Enzymol (1980) 1.27
Regulation of open complex formation at the Escherichia coli galactose operon promoters. Simultaneous interaction of RNA polymerase, gal repressor and CAP/cAMP. J Mol Biol (1992) 1.24
Rat liver pyruvate carboxylase. I. Preparation, properties, and cation specificity. J Biol Chem (1971) 1.23
DNA determinants of promoter selectivity in Escherichia coli. Cold Spring Harb Symp Quant Biol (1983) 1.16
A noncycling activity assay for the omega subunit of Escherichia coli RNA polymerase. J Biol Chem (1979) 1.16
Rat liver pyruvate carboxylase. II. Kinetic studies of the forward reaction. J Biol Chem (1971) 1.16
Control of gene expression in bacteriophage P22 by a small antisense RNA. I. Characterization in vitro of the Psar promoter and the sar RNA transcript. Genes Dev (1987) 1.15
Functional and physical characterization of transcription initiation complexes in the bacteriophage lambda OR region. J Biol Chem (1985) 1.10
Control of gene expression in bacteriophage P22 by a small antisense RNA. II. Characterization of mutants defective in repression. Genes Dev (1987) 1.06
Interaction of the bacteriophage P22 Arc repressor with operator DNA. J Mol Biol (1987) 1.05
On the mechanism of streptolydigin inhibition of Escherichia coli RNA polymerase. J Biol Chem (1980) 1.04
Stimulation of open complex formation by nicks and apurinic sites suggests a role for nucleation of DNA melting in Escherichia coli promoter function. J Biol Chem (1998) 1.01
Characterization of the closed complex intermediate formed during transcription initiation by Escherichia coli RNA polymerase. J Biol Chem (1998) 1.00
Competing promoters in prokaryotic transcription. Trends Biochem Sci (1991) 0.99
Rat liver pyruvate carboxylase. 3. Isotopic exchange studies of the first partial reaction. J Biol Chem (1971) 0.96
Rat liver pyruvate carboxylase. IV. Factors affeing the regulation in vivo. J Biol Chem (1971) 0.94
Selective binding of Escherichia coli RNA polymerase to topoisomers of minicircles carrying the TAC16 and TAC17 promoters. J Biol Chem (1994) 0.92
Role of the sigma subunit of Escherichia coli RNA polymerase in initiation. I. Characterization of core enzyme open complexes. J Biol Chem (1980) 0.89
Enzyme kinetic parameters of the fluorescent ATP analogue, 2-aminopurine triphosphate. FEBS Lett (1973) 0.81
Antisense RNA control of gene expression in bacteriophage P22. II. Kinetic mechanism and cation specificity of the pairing reaction. RNA (1997) 0.80
Antisense RNA control of gene expression in bacteriophage P22. I. Structures of sar RNA and its target, ant mRNA. RNA (1997) 0.80