Published in Gene on January 28, 1994
DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. Nucleic Acids Res (2002) 4.29
Identification and characterization of the potential promoter regions of 1031 kinds of human genes. Genome Res (2001) 4.03
Simple cDNA normalization using kamchatka crab duplex-specific nuclease. Nucleic Acids Res (2004) 3.99
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Genome Res (2000) 3.78
The gene for the embryonic stem cell coactivator UTF1 carries a regulatory element which selectively interacts with a complex composed of Oct-3/4 and Sox-2. Mol Cell Biol (1999) 3.70
Direct isolation and identification of promoters in the human genome. Genome Res (2005) 3.68
Smart-seq2 for sensitive full-length transcriptome profiling in single cells. Nat Methods (2013) 3.59
Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia. Genome Res (2003) 3.50
Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sites. EMBO Rep (2001) 3.47
Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags. Proc Natl Acad Sci U S A (2002) 2.87
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers. Nat Genet (2014) 2.58
DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. Nucleic Acids Res (2006) 2.52
Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae. Genome Biol (2003) 2.25
Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters. Genome Res (2007) 2.12
Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. Plant Physiol (2011) 2.04
Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment. Genome Biol (2006) 2.02
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation. Genome Res (2008) 2.01
Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library. DNA Res (2008) 1.82
Structural bias in T4 RNA ligase-mediated 3'-adapter ligation. Nucleic Acids Res (2012) 1.81
Alternative translation of osteopontin generates intracellular and secreted isoforms that mediate distinct biological activities in dendritic cells. Proc Natl Acad Sci U S A (2008) 1.77
Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria. Nucleic Acids Res (2000) 1.76
CART classification of human 5' UTR sequences. Genome Res (2000) 1.75
Swine Genome Sequencing Consortium (SGSC): a strategic roadmap for sequencing the pig genome. Comp Funct Genomics (2005) 1.75
Polycomb preferentially targets stalled promoters of coding and noncoding transcripts. Genome Res (2010) 1.63
Reduced neuron-specific expression of the TAF1 gene is associated with X-linked dystonia-parkinsonism. Am J Hum Genet (2007) 1.62
Kid, a novel kinesin-like DNA binding protein, is localized to chromosomes and the mitotic spindle. EMBO J (1996) 1.57
PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters. Nucleic Acids Res (2011) 1.56
Unc93B1 biases Toll-like receptor responses to nucleic acid in dendritic cells toward DNA- but against RNA-sensing. J Exp Med (2009) 1.53
DNA methylation-dependent regulation of BORIS/CTCFL expression in ovarian cancer. Cancer Immun (2007) 1.53
L1 antisense promoter drives tissue-specific transcription of human genes. J Biomed Biotechnol (2006) 1.49
A reovirus of the fungus Cryphonectria parasitica that is infectious as particles and related to the coltivirus genus of animal pathogens. J Virol (2004) 1.36
Transcriptional regulation of early transposon elements, an active family of mouse long terminal repeat retrotransposons. J Virol (2005) 1.35
MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database. Nucleic Acids Res (2008) 1.33
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Discontinuous and non-discontinuous subgenomic RNA transcription in a nidovirus. EMBO J (2002) 1.32
Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties. Nucleic Acids Res (2005) 1.32
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A unique human gene that spans over 230 kb in the human chromosome 8p11-12 and codes multiple family proteins sharing RNA-binding motifs. Proc Natl Acad Sci U S A (1996) 1.20
High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer. PLoS One (2009) 1.19
Plasmodium falciparum histone acetyltransferase, a yeast GCN5 homologue involved in chromatin remodeling. Eukaryot Cell (2004) 1.18
Analyses of cDNAs from growth and slug stages of Dictyostelium discoideum. Nucleic Acids Res (2004) 1.15
Dragon gene start finder: an advanced system for finding approximate locations of the start of gene transcriptional units. Genome Res (2003) 1.15
HUNT: launch of a full-length cDNA database from the Helix Research Institute. Nucleic Acids Res (2001) 1.14
Begin at the beginning: predicting genes with 5' UTRs. Genome Res (2005) 1.14
Functional diversity of human basic helix-loop-helix transcription factor TCF4 isoforms generated by alternative 5' exon usage and splicing. PLoS One (2011) 1.12
Comparison of computational methods for identifying translation initiation sites in EST data. BMC Bioinformatics (2004) 1.09
The C. elegans protein CEH-30 protects male-specific neurons from apoptosis independently of the Bcl-2 homolog CED-9. Genes Dev (2007) 1.08
1274 full-open reading frames of transcripts expressed in the developing mouse nervous system. Genome Res (2004) 1.08
NXT2 is required for embryonic heart development in zebrafish. BMC Dev Biol (2005) 1.06
Fugu ESTs: new resources for transcription analysis and genome annotation. Genome Res (2003) 1.05
Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta. BMC Genomics (2008) 1.05
Construction and characterization of a full-length cDNA library for the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici). BMC Genomics (2007) 1.04
Discovery and characterization of a thermostable bacteriophage RNA ligase homologous to T4 RNA ligase 1. Nucleic Acids Res (2003) 1.02
Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Genome Res (2001) 1.02
Retrotransposons influence the mouse transcriptome: implication for the divergence of genetic traits. Genetics (2007) 1.01
Incorporation of non-natural nucleotides into template-switching oligonucleotides reduces background and improves cDNA synthesis from very small RNA samples. BMC Genomics (2010) 1.01
Retrotransposition as a source of new promoters. Mol Biol Evol (2008) 1.00
Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics. Nucleic Acids Res (2008) 0.99
Genomewide trapping of genes that encode secreted and transmembrane proteins repressed by oncogenic signaling. Genome Res (2001) 0.99
Identification and characterization of multiple Spidroin 1 genes encoding major ampullate silk proteins in Nephila clavipes. Insect Mol Biol (2008) 0.98
Identification of the rat IgA Fc receptor encoded in the leukocyte receptor complex. Immunogenetics (2003) 0.98
Analysis of 5'-end sequences of chimpanzee cDNAs. Genome Res (2003) 0.97
Phylogenetic analysis of cellulolytic enzyme genes from representative lineages of termites and a related cockroach. PLoS One (2010) 0.97
An antisense approach to phenotype-based gene cloning in Tetrahymena. Proc Natl Acad Sci U S A (2001) 0.97
Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue. BMC Genomics (2006) 0.96
Enzymes used in molecular biology: a useful guide. J Cell Commun Signal (2008) 0.95
Systematic clustering of transcription start site landscapes. PLoS One (2011) 0.95
A short double-stranded RNA motif of Peach latent mosaic viroid contains the initiation and the self-cleavage sites of both polarity strands. J Virol (2005) 0.95
Detection of the 5'-cap structure of messenger RNAs with the use of the cap-jumping approach. Nucleic Acids Res (2001) 0.95
5'SAGE: 5'-end Serial Analysis of Gene Expression database. Nucleic Acids Res (2005) 0.94
Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Genome Biol (2005) 0.93
Improved full-length cDNA production based on RNA tagging by T4 DNA ligase. Nucleic Acids Res (2004) 0.92
The major transcription initiation site of the p27Kip1 gene is conserved in human and mouse and produces a long 5'-UTR. BMC Mol Biol (2001) 0.91
Reduced proteolysis of secreted gelatin and Yps1-mediated alpha-factor leader processing in a Pichia pastoris kex2 disruptant. Appl Environ Microbiol (2005) 0.91
The transcription factor neural retina leucine zipper (NRL) controls photoreceptor-specific expression of myocyte enhancer factor Mef2c from an alternative promoter. J Biol Chem (2011) 0.90
A bifunctional locus (BIO3-BIO1) required for biotin biosynthesis in Arabidopsis. Plant Physiol (2007) 0.90
A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus. BMC Genomics (2009) 0.90
Chicken CD1 genes are located in the MHC: CD1 and endothelial protein C receptor genes constitute a distinct subfamily of class-I-like genes that predates the emergence of mammals. Immunogenetics (2005) 0.89
Evolution of self-organisation in Dictyostelia by adaptation of a non-selective phosphodiesterase and a matrix component for regulated cAMP degradation. Development (2012) 0.88
Genome-wide identification of transcript start and end sites by transcript isoform sequencing. Nat Protoc (2014) 0.88
The transcription start site landscape of C. elegans. Genome Res (2013) 0.86
Identification and functional analyses of 11,769 full-length human cDNAs focused on alternative splicing. DNA Res (2009) 0.86
Unusual features of fibrillarin cDNA and gene structure in Euglena gracilis: evolutionary conservation of core proteins and structural predictions for methylation-guide box C/D snoRNPs throughout the domain Eucarya. Nucleic Acids Res (2005) 0.86
Characterisation of full-length cDNA sequences provides insights into the Eimeria tenella transcriptome. BMC Genomics (2012) 0.84
General and MicroRNA-Mediated mRNA Degradation Occurs on Ribosome Complexes in Drosophila Cells. Mol Cell Biol (2015) 0.84
Transcriptome analysis of human gastric cancer. Mamm Genome (2005) 0.84
Multiple novel promoter-architectures revealed by decoding the hidden heterogeneity within the genome. Nucleic Acids Res (2014) 0.84
c-Fos/activator protein-1 transactivates wee1 kinase at G(1)/S to inhibit premature mitosis in antigen-specific Th1 cells. EMBO J (2001) 0.84
RNA captor: a tool for RNA characterization. PLoS One (2011) 0.84
Collection of Macaca fascicularis cDNAs derived from bone marrow, kidney, liver, pancreas, spleen, and thymus. BMC Res Notes (2009) 0.83
Human glycolipid transfer protein gene (GLTP) expression is regulated by Sp1 and Sp3: involvement of the bioactive sphingolipid ceramide. J Biol Chem (2010) 0.83
Characterization of MHC class I transcripts of a Malaysian cynomolgus macaque by high-throughput pyrosequencing and EST libraries. Immunogenetics (2011) 0.83
Comprehensive analysis of transcript start sites in ly49 genes reveals an unexpected relationship with gene function and a lack of upstream promoters. PLoS One (2011) 0.83
PromoterPlot: a graphical display of promoter similarities by pattern recognition. Nucleic Acids Res (2005) 0.82
Mechanism of ubiquitous expression of mouse uncoupling protein 2 mRNA: control by cis-acting DNA element in 5'-flanking region. Biochem J (1999) 0.82
A new rapid amplification of cDNA ends method for extremely guanine plus cytosine-rich genes. Anal Biochem (2006) 0.82
Retinoic acid induces expression of the thyroid hormone transporter, monocarboxylate transporter 8 (Mct8). J Biol Chem (2010) 0.82
Torovirus non-discontinuous transcription: mutational analysis of a subgenomic mRNA promoter. J Virol (2005) 0.82
DNA hypomethylation-mediated activation of Cancer/Testis Antigen 45 (CT45) genes is associated with disease progression and reduced survival in epithelial ovarian cancer. Epigenetics (2015) 0.81
The genome of the social amoeba Dictyostelium discoideum. Nature (2005) 9.18
Identification and characterization of the potential promoter regions of 1031 kinds of human genes. Genome Res (2001) 4.03
Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library. Gene (1997) 4.02
Transformation by Rous sarcoma virus induces a novel gene with homology to a mitogenic platelet protein. Cell (1987) 3.50
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Initiation of simian virus 40 DNA replication in vitro. J Virol (1983) 2.88
Early-onset ataxia with ocular motor apraxia and hypoalbuminemia is caused by mutations in a new HIT superfamily gene. Nat Genet (2001) 2.79
Efficient gene activation in mammalian cells by using recombinant adenovirus expressing site-specific Cre recombinase. Nucleic Acids Res (1995) 2.79
Use of the human elongation factor 1 alpha promoter as a versatile and efficient expression system. Gene (1990) 2.14
Statistical analysis of the 5' untranslated region of human mRNA using "Oligo-Capped" cDNA libraries. Genomics (2000) 2.09
Identification of a novel gene, GASC1, within an amplicon at 9p23-24 frequently detected in esophageal cancer cell lines. Cancer Res (2000) 1.78
CART classification of human 5' UTR sequences. Genome Res (2000) 1.75
CREB-H: a novel mammalian transcription factor belonging to the CREB/ATF family and functioning via the box-B element with a liver-specific expression. Nucleic Acids Res (2001) 1.62
A second p53-related protein, p73L, with high homology to p73. Biochem Biophys Res Commun (1998) 1.47
Human ACTH hypersensitivity syndrome associated with abnormalities of the ACTH receptor gene. Clin Endocrinol (Oxf) (1998) 1.43
Construction of full-length-enriched cDNA libraries. The oligo-capping method. Methods Mol Biol (2001) 1.41
Association of simian virus 40 T antigen with replicating nucleoprotein complexes of simian virus 40. J Virol (1980) 1.33
FULL-malaria: a database for a full-length enriched cDNA library from human malaria parasite, Plasmodium falciparum. Nucleic Acids Res (2001) 1.29
All in good time: the Arabidopsis circadian clock. Trends Plant Sci (2000) 1.29
Two classes of transformation-deficient, immortalization-positive simian virus 40 mutants constructed by making three-base insertions in the T antigen gene. J Virol (1984) 1.21
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A core promoter and a frequent single-nucleotide polymorphism of the mismatch repair gene hMLH1. Biochem Biophys Res Commun (1999) 1.14
Power spectral analysis of heart rate variability as a new method for assessing autonomic activity in the rat. J Electrocardiol (1994) 1.11
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78-kilodalton glucose-regulated protein is induced in Rous sarcoma virus-transformed cells independently of glucose deprivation. Mol Cell Biol (1988) 1.09
Selective production of transgenic mice using green fluorescent protein as a marker. Nat Biotechnol (1997) 1.09
Molecular characterization of NSD1, a human homologue of the mouse Nsd1 gene. Gene (2001) 1.08
The molecular characterization and tissue distribution of the human cysteinyl leukotriene CysLT(2) receptor. Biochem Biophys Res Commun (2000) 1.08
Characterization of cDNA encoding mouse homolog of fission yeast dhp1+ gene: structural and functional conservation. Nucleic Acids Res (1995) 1.06
Chemokine PARC gene (SCYA18) generated by fusion of two MIP-1alpha/LD78alpha-like genes. Genomics (1999) 1.05
Mucoepidermoid carcinoma of the pancreas: report of a case. Surg Today (1995) 1.02
Cloning, expression analysis, and chromosomal localization of BH-protocadherin (PCDH7), a novel member of the cadherin superfamily. Genomics (1998) 1.01
Cloning, expression analysis, and chromosomal localization of HIP1R, an isolog of huntingtin interacting protein (HIP1). J Hum Genet (1998) 1.00
The dhp1(+) gene, encoding a putative nuclear 5'-->3' exoribonuclease, is required for proper chromosome segregation in fission yeast. Nucleic Acids Res (2001) 0.99
Cloning and expression profile of mouse and human genes, Rnf11/RNF11, encoding a novel RING-H2 finger protein. Biochim Biophys Acta (1999) 0.96
Autonomic nervous function in mice and voles (Microtus arvalis): investigation by power spectral analysis of heart rate variability. Lab Anim (1996) 0.96
Identification of a novel protocadherin gene (PCDH11) on the human XY homology region in Xq21.3. Genomics (1999) 0.96
Small t protein of simian virus 40 is required for dense focus formation in a rat cell line. J Virol (1982) 0.95
Assignment of 118 novel cDNAs of cynomolgus monkey brain to human chromosomes. Gene (2001) 0.95
Human cytomegalovirus open reading frame UL11 encodes a highly polymorphic protein expressed on the infected cell surface. Arch Virol (1997) 0.95
Expression of adenovirus type 12 E1A gene in monkey cells, using a simian virus 40 vector. J Virol (1983) 0.95
Assessment of autonomic nervous function by power spectral analysis of heart rate variability in the horse. J Auton Nerv Syst (1996) 0.94
Power spectral analysis of heart rate variability for assessment of diurnal variation of autonomic nervous activity in miniature swine. Lab Anim Sci (1999) 0.93
A rodent model of cirrhosis, ascites, and bacterial peritonitis. Gastroenterology (1991) 0.91
Growth profiles of recent canine distemper isolates on Vero cells expressing canine signalling lymphocyte activation molecule (SLAM). J Comp Pathol (2005) 0.90
Molecular cloning and characterization of a novel cbl-family gene, cbl-c. Gene (1999) 0.90
Isolation, tissue expression, and chromosomal assignment of human RGS5, a novel G-protein signaling regulator gene. J Hum Genet (1998) 0.90
Cloning and characterization of mouse Dhm2 cDNA, a functional homolog of budding yeast SEP1. Gene (1997) 0.89
BH-protocadherin-c, a member of the cadherin superfamily, interacts with protein phosphatase 1 alpha through its intracellular domain. FEBS Lett (1999) 0.89
Contribution of cyanide-insensitive respiratory pathway, catalyzed by the alternative oxidase, to citric acid production in Aspergillus niger. Biosci Biotechnol Biochem (2000) 0.89
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Two cases of esophageal diverticula. Acta Otolaryngol Suppl (1996) 0.87
Mammalian homologue of E. coli Ras-like GTPase (ERA) is a possible apoptosis regulator with RNA binding activity. Genes Cells (2001) 0.87
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Two short sequences have positive effects on the human p27Kip1 gene transcription. Gene (1999) 0.86
Identification of DMC1, a novel gene in the TOC region on 17q25.1 that shows loss of expression in multiple human cancers. J Hum Genet (2001) 0.86
Structural analyses of the UTF1 gene encoding a transcriptional coactivator expressed in pluripotent embryonic stem cells. Biochem Biophys Res Commun (2001) 0.86
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A novel human gene whose product shares significant homology with the bovine brain-specific protein p25 on chromosome 5p15.3. J Hum Genet (1999) 0.81
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