Published in BMC Genomics on January 13, 2012
RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis. BMC Genomics (2015) 0.81
The Eimeria transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria. Database (Oxford) (2013) 0.80
Evaluation of the protective effect of pVAX-EtMIC3-recombined plasmid against E. tenella in chicken. Parasitol Res (2017) 0.75
Characterization and localization of an Eimeria-specific protein in Eimeria maxima. Parasitol Res (2013) 0.75
Comparative transcriptome analysis of second- and third-generation merozoites of Eimeria necatrix. Parasit Vectors (2017) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol (2000) 128.08
Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res (1998) 106.16
Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res (1998) 96.63
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol (2001) 66.87
WebLogo: a sequence logo generator. Genome Res (2004) 59.58
Artemis: sequence visualization and annotation. Bioinformatics (2000) 46.68
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics (2005) 46.40
SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods (2011) 33.90
The scanning model for translation: an update. J Cell Biol (1989) 31.23
Recognition of protein coding regions in DNA sequences. Nucleic Acids Res (1982) 28.91
WoLF PSORT: protein localization predictor. Nucleic Acids Res (2007) 10.14
Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res (2000) 7.43
Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res (2002) 6.65
Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene (1994) 5.28
A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet (2004) 4.94
Recent evidence for evolution of the genetic code. Microbiol Rev (1992) 4.32
PCR-amplified microsatellites as markers in plant genetics. Plant J (1993) 3.45
d2_cluster: a validated method for clustering EST and full-length cDNAsequences. Genome Res (1999) 3.32
Simple sequence repeats as a source of quantitative genetic variation. Trends Genet (1997) 2.92
Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size. Mol Biol Evol (1995) 2.82
The implications of structured 5' untranslated regions on translation and disease. Semin Cell Dev Biol (2004) 2.78
A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base. Genome Res (1999) 2.68
Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus). Genetics (1997) 2.65
DNA triplet repeats mediate heterochromatin-protein-1-sensitive variegated gene silencing. Nature (2003) 2.33
Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism. Genome Res (2000) 2.24
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res (2009) 2.11
The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis. Nucleic Acids Res (1987) 2.02
Identification of GPI anchor attachment signals by a Kohonen self-organizing map. Bioinformatics (2005) 1.99
The biology of avian Eimeria with an emphasis on their control by vaccination. Adv Parasitol (2005) 1.90
Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana. Genetics (1997) 1.89
Malaria vaccine developments. Lancet (2004) 1.77
Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database. Genome Res (2003) 1.75
DNA vaccination with genes encoding Toxoplasma gondii antigens GRA1, GRA7, and ROP2 induces partially protective immunity against lethal challenge in mice. Infect Immun (2000) 1.44
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics (2010) 1.41
Low-usage codons in Escherichia coli, yeast, fruit fly and primates. Gene (1991) 1.39
Consensus sequence of translational initiation sites from Toxoplasma gondii genes. Parasitol Res (1997) 1.37
The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Plant J (2003) 1.26
Signaling of immune system cells by glycosylphosphatidylinositol (GPI) anchor and related structures derived from parasitic protozoa. Curr Opin Microbiol (2000) 1.18
Proteomic comparison of four Eimeria tenella life-cycle stages: unsporulated oocyst, sporulated oocyst, sporozoite and second-generation merozoite. Proteomics (2009) 1.12
Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization. Genome Res (2007) 1.10
The Eimeria genome projects: a sequence of events. Trends Parasitol (2004) 1.09
Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs. BMC Genomics (2009) 1.08
Eimeria tenella sporozoites and merozoites differentially express glycosylphosphatidylinositol-anchored variant surface proteins. Mol Biochem Parasitol (2004) 1.03
Advances and prospects for subunit vaccines against protozoa of veterinary importance. Vet Parasitol (2001) 1.02
Immunity to coccidiosis: stages of the life-cycle of Eimeria maxima which induce, and are affected by, the response of the host. Parasitology (1976) 0.97
Codon usage as a tool to predict the cellular location of eukaryotic ribosomal proteins and aminoacyl-tRNA synthetases. Nucleic Acids Res (1999) 0.90
A survey of genes in Eimeria tenella merozoites by EST sequencing. Int J Parasitol (1999) 0.89
The Houghton strain of Eimeria tenella: a review of the type strain selected for genome sequencing. Avian Pathol (2003) 0.88
Comparative EST analyses provide insights into gene expression in two asexual developmental stages of Eimeria tenella. Exp Parasitol (2002) 0.88
Identification of Eimeria tenella genes encoding for secretory proteins and evaluation of candidates by DNA immunisation studies in chickens. Vaccine (2007) 0.86
Immunogenic Eimeria tenella glycosylphosphatidylinositol-anchored surface antigens (SAGs) induce inflammatory responses in avian macrophages. PLoS One (2011) 0.85
Analysis of dinucleotide frequency and codon usage in the phylum Apicomplexa. Gene (1993) 0.84
The endogenous development of virulent strains and attenuated precocious lines of Eimeria tenella and E. necatrix. J Parasitol (1987) 0.80
Eimeria tenella: identification of secretory and surface proteins from expressed sequence tags. Exp Parasitol (2005) 0.80
Eimeria tenella glucose-6-phosphate isomerase: molecular characterization and assessment as a target for anti-coccidial control. Parasitology (2010) 0.79
Construction and analysis of full-length cDNA library of Cryptosporidium parvum. Parasitol Int (2011) 0.79
Frequent pathway mutations of splicing machinery in myelodysplasia. Nature (2011) 11.44
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res (2004) 9.18
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science (2003) 8.65
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (2007) 8.12
Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet (2003) 7.98
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
A transcription factor response element for gene expression during circadian night. Nature (2002) 6.55
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome Res (2005) 5.22
Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature (2004) 5.08
Integrated molecular analysis of clear-cell renal cell carcinoma. Nat Genet (2013) 4.61
Phosphate-activated glutaminase (GLS2), a p53-inducible regulator of glutamine metabolism and reactive oxygen species. Proc Natl Acad Sci U S A (2010) 4.18
Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. Oncogene (2003) 3.53
The landscape of C. elegans 3'UTRs. Science (2010) 3.32
Loop-mediated isothermal amplification for detection of African trypanosomes. J Clin Microbiol (2003) 3.23
DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res (2007) 3.11
Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science (2008) 3.10
HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle. Nature (2012) 3.08
Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks. PLoS Genet (2012) 2.89
DKK1, a negative regulator of Wnt signaling, is a target of the beta-catenin/TCF pathway. Oncogene (2004) 2.73
Thyrotrophin in the pars tuberalis triggers photoperiodic response. Nature (2008) 2.60
Prophylactic clip application does not decrease delayed bleeding after colonoscopic polypectomy. Gastrointest Endosc (2003) 2.55
DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. Nucleic Acids Res (2006) 2.52
The functional consequences of alternative promoter use in mammalian genomes. Trends Genet (2008) 2.47
5'-end SAGE for the analysis of transcriptional start sites. Nat Biotechnol (2004) 2.34
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol (2011) 2.18
Promoter prediction analysis on the whole human genome. Nat Biotechnol (2004) 2.08
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res (2007) 2.07
Recount: expectation maximization based error correction tool for next generation sequencing data. Genome Inform (2009) 1.95
The biology of avian Eimeria with an emphasis on their control by vaccination. Adv Parasitol (2005) 1.90
Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals. Genome Res (2012) 1.76
High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice. Genome Res (2013) 1.75
Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr Biol (2013) 1.69
Functional gene screening system identified TRPV4 as a regulator of chondrogenic differentiation. J Biol Chem (2007) 1.66
Pathway for differentiation of human embryonic stem cells to vascular cell components and their potential for vascular regeneration. Arterioscler Thromb Vasc Biol (2007) 1.63
Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs. Genome Res (2004) 1.63
Species-specific loop-mediated isothermal amplification (LAMP) for diagnosis of trypanosomosis. Acta Trop (2007) 1.61
Massive transcriptional start site analysis of human genes in hypoxia cells. Nucleic Acids Res (2009) 1.60
Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity. Gene (2005) 1.57
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis. Genome Res (2011) 1.57
Oil palm (Elaeis guineensis Jacq.) tissue culture ESTs: identifying genes associated with callogenesis and embryogenesis. BMC Plant Biol (2008) 1.57
Ezh2 augments leukemogenicity by reinforcing differentiation blockage in acute myeloid leukemia. Blood (2012) 1.56
The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes. RNA (2009) 1.54
Sirt1 plays an important role in mediating greater functionality of human ES/iPS-derived vascular endothelial cells. Atherosclerosis (2010) 1.52
Engraftment and tumor formation after allogeneic in utero transplantation of primate embryonic stem cells. Transplantation (2003) 1.51
A role for coccidian cGMP-dependent protein kinase in motility and invasion. Int J Parasitol (2004) 1.48
Malt1-induced cleavage of regnase-1 in CD4(+) helper T cells regulates immune activation. Cell (2013) 1.46
MAML1 enhances the transcriptional activity of Runx2 and plays a role in bone development. PLoS Genet (2013) 1.42
Pancreatic duct holder for facilitating duct-to-mucosa pancreatojejunostomy after pancreatoduodenectomy. Am J Surg (2009) 1.41
Microneme proteins in apicomplexans. Subcell Biochem (2008) 1.40
Diversity of translation start sites may define increased complexity of the human short ORFeome. Mol Cell Proteomics (2007) 1.39
Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. Genome Res (2007) 1.37
DBTSS provides a tissue specific dynamic view of Transcription Start Sites. Nucleic Acids Res (2009) 1.36
The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation. Genome Biol (2008) 1.35
Genome-wide profiling of the core clock protein BMAL1 targets reveals a strict relationship with metabolism. Mol Cell Biol (2010) 1.35
Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs. Nucleic Acids Res (2006) 1.34
DBTSS: DataBase of Transcriptional Start Sites progress report in 2012. Nucleic Acids Res (2011) 1.33
Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009. Nucleic Acids Res (2008) 1.32
Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs. Nucleic Acids Res (2006) 1.31
Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii. Genome Res (2006) 1.28
CD147 and matrix metalloproteinase-2 protein expression as significant prognostic factors in esophageal squamous cell carcinoma. Cancer (2004) 1.27
The polycomb protein Ezh2 regulates differentiation and plasticity of CD4(+) T helper type 1 and type 2 cells. Immunity (2013) 1.25
Stability of Loop-Mediated Isothermal Amplification (LAMP) reagents and its amplification efficiency on crude trypanosome DNA templates. J Vet Med Sci (2009) 1.23
Concurrent loss of Ezh2 and Tet2 cooperates in the pathogenesis of myelodysplastic disorders. J Exp Med (2013) 1.23
A selective review of advances in coccidiosis research. Adv Parasitol (2013) 1.22
MORN1 has a conserved role in asexual and sexual development across the apicomplexa. Eukaryot Cell (2008) 1.20
Development of loop-mediated isothermal amplification (LAMP) assays for rapid detection of Ehrlichia ruminantium. BMC Microbiol (2010) 1.20
Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species. Nucleic Acids Res (2004) 1.20
H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Nucleic Acids Res (2006) 1.20
Emergence of new types of Theileria orientalis in Australian cattle and possible cause of theileriosis outbreaks. Parasit Vectors (2011) 1.19
High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer. PLoS One (2009) 1.19
Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis. Nucleic Acids Res (2007) 1.19
GATA-1 and NF-Y cooperate to mediate erythroid-specific transcription of Gfi-1B gene. Nucleic Acids Res (2004) 1.19
[18F]Flutemetamol amyloid-beta PET imaging compared with [11C]PIB across the spectrum of Alzheimer's disease. Eur J Nucl Med Mol Imaging (2013) 1.19
STAT6-mediated displacement of polycomb by trithorax complex establishes long-term maintenance of GATA3 expression in T helper type 2 cells. J Exp Med (2010) 1.18
Evaluation of loop-mediated isothermal amplification (LAMP), PCR and parasitological tests for detection of Trypanosoma evansi in experimentally infected pigs. Vet Parasitol (2005) 1.15
Insights into rubber biosynthesis from transcriptome analysis of Hevea brasiliensis latex. J Exp Bot (2007) 1.14
Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability. RNA Biol (2012) 1.13
Proteomic comparison of four Eimeria tenella life-cycle stages: unsporulated oocyst, sporulated oocyst, sporozoite and second-generation merozoite. Proteomics (2009) 1.12
A novel approach, based on BLSOMs (Batch Learning Self-Organizing Maps), to the microbiome analysis of ticks. ISME J (2013) 1.12
Development of loop-mediated isothermal amplification (LAMP) method for diagnosis of equine piroplasmosis. Vet Parasitol (2006) 1.12
Serodiagnosis of Neospora caninum infection in cattle by enzyme-linked immunosorbent assay with recombinant truncated NcSAG1. Vet Parasitol (2003) 1.12
Challenges in the successful control of the avian coccidia. Vaccine (2006) 1.11
Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization. Genome Res (2007) 1.10
Coelacanth genomes reveal signatures for evolutionary transition from water to land. Genome Res (2013) 1.10
A perspective on Theileria equi infections in donkeys. Jpn J Vet Res (2009) 1.10
Metabolic routes affecting rubber biosynthesis in Hevea brasiliensis latex. J Exp Bot (2011) 1.09
The Eimeria genome projects: a sequence of events. Trends Parasitol (2004) 1.09
The use of Loop-mediated Isothermal Amplification (LAMP) to detect the re-emerging Human African Trypanosomiasis (HAT) in the Luangwa and Zambezi valleys. Parasit Vectors (2012) 1.09
Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs. BMC Genomics (2009) 1.08
OASIS is a transcriptional activator of CREB/ATF family with a transmembrane domain. Biochem Biophys Res Commun (2002) 1.08
Current status of equine piroplasmosis in the Sudan. Infect Genet Evol (2013) 1.08
Characterisation of Plasmodium invasive organelles; an ookinete microneme proteome. Proteomics (2009) 1.07
Stable transfection of Eimeria tenella: constitutive expression of the YFP-YFP molecule throughout the life cycle. Int J Parasitol (2008) 1.06