Published in Nucleic Acids Res on January 01, 1996
The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res (1997) 12.30
PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames. Nucleic Acids Res (1996) 9.82
The PROSITE database, its status in 1997. Nucleic Acids Res (1997) 8.12
Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships. Proc Natl Acad Sci U S A (1998) 7.18
Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci (2000) 6.23
Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. Genome Res (2004) 5.26
A database of macromolecular motions. Nucleic Acids Res (1998) 3.67
Functional analysis of genes for biosynthesis of pyocyanin and phenazine-1-carboxamide from Pseudomonas aeruginosa PAO1. J Bacteriol (2001) 3.58
Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev (1998) 2.97
Novel developments with the PRINTS protein fingerprint database. Nucleic Acids Res (1997) 2.79
mre11S--a yeast mutation that blocks double-strand-break processing and permits nonhomologous synapsis in meiosis. Genes Dev (1997) 2.61
The yeast gene, MDM20, is necessary for mitochondrial inheritance and organization of the actin cytoskeleton. J Cell Biol (1997) 2.44
Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro. J Bacteriol (1996) 2.09
The 65 and 110 kDa SR-related proteins of the U4/U6.U5 tri-snRNP are essential for the assembly of mature spliceosomes. EMBO J (2001) 1.98
A seven-gene locus for synthesis of phenazine-1-carboxylic acid by Pseudomonas fluorescens 2-79. J Bacteriol (1998) 1.94
Conserved sequence motifs among bacterial, eukaryotic, and archaeal phosphatases that define a new phosphohydrolase superfamily. Protein Sci (1998) 1.93
The RD114/simian type D retrovirus receptor is a neutral amino acid transporter. Proc Natl Acad Sci U S A (1999) 1.88
Evolutionary relationships among extradiol dioxygenases. J Bacteriol (1996) 1.88
Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res (1997) 1.87
A metabolic enzyme as a primary virulence factor of Mycoplasma mycoides subsp. mycoides small colony. J Bacteriol (2005) 1.84
The discoidin domain family revisited: new members from prokaryotes and a homology-based fold prediction. Protein Sci (1998) 1.74
The Chlamydomonas reinhardtii ODA3 gene encodes a protein of the outer dynein arm docking complex. J Cell Biol (1997) 1.53
The outer dynein arm-docking complex: composition and characterization of a subunit (oda1) necessary for outer arm assembly. Mol Biol Cell (2002) 1.51
Genetic and biochemical characterization of glycerol uptake in mycoplasma mycoides subsp. mycoides SC: its impact on H(2)O(2) production and virulence. Clin Diagn Lab Immunol (2001) 1.50
Prediction of functional residues in water channels and related proteins. Protein Sci (1998) 1.47
Sequence analysis of the cloned glossy8 gene of maize suggests that it may code for a beta-ketoacyl reductase required for the biosynthesis of cuticular waxes. Plant Physiol (1997) 1.40
The human EBNA-2 coactivator p100: multidomain organization and relationship to the staphylococcal nuclease fold and to the tudor protein involved in Drosophila melanogaster development. Biochem J (1997) 1.35
Genetic characterization and expression in heterologous hosts of the 3-(3-hydroxyphenyl)propionate catabolic pathway of Escherichia coli K-12. J Bacteriol (1997) 1.28
Characterization of P40, a cytadhesin of Mycoplasma agalactiae. Infect Immun (2002) 1.28
Serine protein kinase activity associated with rotavirus phosphoprotein NSP5. J Virol (1997) 1.22
phzO, a gene for biosynthesis of 2-hydroxylated phenazine compounds in Pseudomonas aureofaciens 30-84. J Bacteriol (2001) 1.18
Characterization of aflJ, a gene required for conversion of pathway intermediates to aflatoxin. Appl Environ Microbiol (1998) 1.12
Regulation of pre-T cell receptor (pT alpha-TCR beta) gene expression during human thymic development. J Exp Med (1996) 1.09
The crystal structure of a multifunctional protein: phosphoglucose isomerase/autocrine motility factor/neuroleukin. Proc Natl Acad Sci U S A (1999) 1.08
The structure of cyclin H: common mode of kinase activation and specific features. EMBO J (1997) 1.08
Targeted mutants of Cochliobolus carbonum lacking the two major extracellular polygalacturonases. Appl Environ Microbiol (1998) 1.03
Evidence for phosphorylation and ubiquitinylation of the turnip yellow mosaic virus RNA-dependent RNA polymerase domain expressed in a baculovirus-insect cell system. Biochem J (2000) 1.03
Identification, genomic organization, and analysis of the group III capsular polysaccharide genes kpsD, kpsM, kpsT, and kpsE from an extraintestinal isolate of Escherichia coli (CP9, O4/K54/H5). J Bacteriol (1998) 1.03
A mesangium-predominant gene, megsin, is a new serpin upregulated in IgA nephropathy. J Clin Invest (1998) 1.01
Characterization of a predominant immunogenic outer membrane protein of Riemerella anatipestifer. Clin Diagn Lab Immunol (2000) 1.01
Prediction of protein functional domains from sequences using artificial neural networks. Genome Res (2001) 1.00
Characterization and analysis of a stable serotype-associated membrane protein (P30) of Mycoplasma agalactiae. J Clin Microbiol (2001) 0.99
Genetic and serological analysis of lipoprotein LppA in Mycoplasma mycoides subsp. mycoides LC and Mycoplasma mycoides subsp. capri. Clin Diagn Lab Immunol (1999) 0.98
A 3-(3-hydroxyphenyl)propionic acid catabolic pathway in Rhodococcus globerulus PWD1: cloning and characterization of the hpp operon. J Bacteriol (1997) 0.95
Characterization of the hca cluster encoding the dioxygenolytic pathway for initial catabolism of 3-phenylpropionic acid in Escherichia coli K-12. J Bacteriol (1998) 0.95
SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences. Nucleic Acids Res (2006) 0.94
Cloning and analysis of the pepV dipeptidase gene of Lactococcus lactis MG1363. J Bacteriol (1997) 0.93
Zebrafish usp39 mutation leads to rb1 mRNA splicing defect and pituitary lineage expansion. PLoS Genet (2011) 0.92
Aerolysin and pertussis toxin share a common receptor-binding domain. EMBO J (1997) 0.90
Cloning, nucleotide sequence and expression of the gene encoding factor Xa inhibitor from the salivary glands of the tick, Ornithodoros savignyi. Exp Appl Acarol (1998) 0.89
Novel type of glucose-6-phosphate isomerase in the hyperthermophilic archaeon Pyrococcus furiosus. J Bacteriol (2001) 0.89
Transcriptional organization and regulation of a polycistronic cold shock operon in Sinorhizobium meliloti RM1021 encoding homologs of the Escherichia coli major cold shock gene cspA and ribosomal protein gene rpsU. Appl Environ Microbiol (2000) 0.89
Molecular cloning and functional expression of a novel human gene encoding two 41-43 kDa skeletal muscle internal membrane proteins. Biochem J (1998) 0.87
The SBASE protein domain library, release 5.0: a collection of annotated protein sequence segments. Nucleic Acids Res (1997) 0.85
RGD motif of lipoprotein T, involved in adhesion of Mycoplasma conjunctivae to lamb synovial tissue cells. J Bacteriol (2010) 0.85
A survey of computational intelligence techniques in protein function prediction. Int J Proteomics (2014) 0.83
The directory of P450-containing systems in 1996. Nucleic Acids Res (1997) 0.79
The Signal Recognition Particle Database (SRPDB). Nucleic Acids Res (1997) 0.77
A comparative analysis of three classes of bacterial non-specific Acid phosphatases and archaeal phosphoesterases: evolutionary perspective. Acta Inform Med (2012) 0.77
Bovine submaxillary mucin contains multiple domains and tandemly repeated non-identical sequences. Biochem J (1998) 0.77
Structural studies of phosphoglucose isomerase from Mycobacterium tuberculosis H37Rv. Acta Crystallogr Sect F Struct Biol Cryst Commun (2010) 0.76
Glycosyltransferases in SWISS-PROT. Glycoconj J (1998) 0.75
Improved sensitivity of profile searches through the use of sequence weights and gap excision. Comput Appl Biosci (1994) 31.96
Profile analysis: detection of distantly related proteins. Proc Natl Acad Sci U S A (1987) 29.26
A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. Trends Biochem Sci (1994) 28.36
Improving the sensitivity of the sequence profile method. Protein Sci (1994) 13.54
The EMBL Network File Server. Nucleic Acids Res (1989) 11.10
Automated assembly of protein blocks for database searching. Nucleic Acids Res (1991) 10.84
Profile analysis. Methods Enzymol (1990) 9.40
The SWISS-PROT protein sequence data bank: current status. Nucleic Acids Res (1994) 6.98
The European Bioinformatics Institute (EBI) databases. Nucleic Acids Res (1994) 6.58
PROSITE: recent developments. Nucleic Acids Res (1994) 4.46
The PROSITE dictionary of sites and patterns in proteins, its current status. Nucleic Acids Res (1993) 3.60
Sequence analysis by electronic mail server. Trends Biochem Sci (1993) 2.94
Construction of a dictionary of sequence motifs that characterize groups of related proteins. Protein Eng (1992) 2.58
The PROSITE database, its status in 1999. Nucleic Acids Res (1999) 24.88
The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res (2001) 24.45
The SWISS-PROT protein sequence data bank. Nucleic Acids Res (1992) 17.72
A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins. FASEB J (1997) 15.10
Improving the sensitivity of the sequence profile method. Protein Sci (1994) 13.54
A flexible motif search technique based on generalized profiles. Comput Chem (1996) 13.22
SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box. Cell (1996) 11.22
Inhibition of death receptor signals by cellular FLIP. Nature (1997) 9.58
The SWISS-PROT protein sequence data bank. Nucleic Acids Res (1991) 9.45
ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Proc Int Conf Intell Syst Mol Biol (1999) 9.18
PROSITE: a dictionary of sites and patterns in proteins. Nucleic Acids Res (1991) 9.18
PROSITE: a dictionary of sites and patterns in proteins. Nucleic Acids Res (1992) 8.52
The PROSITE database, its status in 1997. Nucleic Acids Res (1997) 8.12
The SWISS-PROT protein sequence data bank: current status. Nucleic Acids Res (1994) 6.98
Compilation and analysis of eukaryotic POL II promoter sequences. Nucleic Acids Res (1986) 6.68
Arac/XylS family of transcriptional regulators. Microbiol Mol Biol Rev (1997) 6.56
InterPro--an integrated documentation resource for protein families, domains and functional sites. Bioinformatics (2000) 6.42
BAFF, a novel ligand of the tumor necrosis factor family, stimulates B cell growth. J Exp Med (1999) 6.27
Viral FLICE-inhibitory proteins (FLIPs) prevent apoptosis induced by death receptors. Nature (1997) 6.23
The SWISS-PROT protein sequence data bank and its new supplement TREMBL. Nucleic Acids Res (1996) 6.14
The ENZYME data bank in 1995. Nucleic Acids Res (1996) 4.70
The SWISS-PROT protein sequence data bank, recent developments. Nucleic Acids Res (1993) 4.68
Sea urchin histone mRNA termini are located in gene regions downstream from putative regulatory sequences. Nature (1980) 4.51
PROSITE: recent developments. Nucleic Acids Res (1994) 4.46
The eukaryotic promoter database (EPD). Nucleic Acids Res (2000) 4.21
Methods and algorithms for statistical analysis of protein sequences. Proc Natl Acad Sci U S A (1992) 3.63
Rim is a putative Rab3 effector in regulating synaptic-vesicle fusion. Nature (1997) 3.63
The PROSITE dictionary of sites and patterns in proteins, its current status. Nucleic Acids Res (1993) 3.60
The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway. Trends Biochem Sci (1996) 3.57
Searching for regulatory elements in human noncoding sequences. Curr Opin Struct Biol (1997) 3.30
APRIL, a new ligand of the tumor necrosis factor family, stimulates tumor cell growth. J Exp Med (1998) 3.17
The ENZYME data bank. Nucleic Acids Res (1994) 2.92
Characterization of Schizosaccharomyces pombe Hus1: a PCNA-related protein that associates with Rad1 and Rad9. Mol Cell Biol (2000) 2.91
DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. J Biol Chem (2000) 2.90
The FHA domain: a putative nuclear signalling domain found in protein kinases and transcription factors. Trends Biochem Sci (1995) 2.78
The PCI domain: a common theme in three multiprotein complexes. Trends Biochem Sci (1998) 2.73
Mammalian homologues of Caenorhabditis elegans unc-13 gene define novel family of C2-domain proteins. J Biol Chem (1995) 2.68
The S. pombe cdc15 gene is a key element in the reorganization of F-actin at mitosis. Cell (1995) 2.66
TRAIL receptors 1 (DR4) and 2 (DR5) signal FADD-dependent apoptosis and activate NF-kappaB. Immunity (1997) 2.60
Structure, expression, and functional analysis of a Na(+)-dependent glutamate/aspartate transporter from rat brain. Proc Natl Acad Sci U S A (1992) 2.59
Iminobiotin affinity columns and their application to retrieval of streptavidin. Proc Natl Acad Sci U S A (1980) 2.57
Hepatocytes produce nitrogen oxides from L-arginine in response to inflammatory products of Kupffer cells. J Exp Med (1989) 2.49
The pyrin domain: a possible member of the death domain-fold family implicated in apoptosis and inflammation. Curr Biol (2001) 2.43
SAM as a protein interaction domain involved in developmental regulation. Protein Sci (1997) 2.42
A conserved domain is present in different families of vesicular fusion proteins: a new superfamily. Proc Natl Acad Sci U S A (1997) 2.42
Modeling sequencing errors by combining Hidden Markov models. Bioinformatics (2003) 2.34
Statistical methods and insights for protein and DNA sequences. Annu Rev Biophys Biophys Chem (1991) 2.32
Single-cell PCR analysis of TCR repertoires selected by antigen in vivo: a high magnitude CD8 response is comprised of very few clones. Immunity (1996) 2.27
The Eukaryotic Promoter Database EPD. Nucleic Acids Res (1998) 2.24
The C. elegans homolog of the p53 tumor suppressor is required for DNA damage-induced apoptosis. Curr Biol (2001) 2.22
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Proc Natl Acad Sci U S A (2000) 2.21
[Vacuum-assisted abdominal closure: its role in the treatment of complex abdominal and perineal wounds. Experience in 48 patients]. J Chir (Paris) (2007) 2.12
A latrophilin/CL-1-like GPS domain in polycystin-1. Curr Biol (1999) 2.08
The Spg1p GTPase is an essential, dosage-dependent inducer of septum formation in Schizosaccharomyces pombe. Genes Dev (1997) 2.05
HLA-DR2 dose effect on susceptibility to multiple sclerosis and influence on disease course. Am J Hum Genet (2003) 2.02
The CARD domain: a new apoptotic signalling motif. Trends Biochem Sci (1997) 2.02
Identification of CARDIAK, a RIP-like kinase that associates with caspase-1. Curr Biol (1998) 1.97
trEST, trGEN and Hits: access to databases of predicted protein sequences. Nucleic Acids Res (2001) 1.93
The fight of viruses against apoptosis. Curr Opin Genet Dev (1998) 1.88
Clathrin self-assembly is mediated by a tandemly repeated superhelix. Nature (1999) 1.84
Characterization of two receptors for TRAIL. FEBS Lett (1997) 1.82
The Eukaryotic Promoter Database (EPD): recent developments. Nucleic Acids Res (1999) 1.81
The discoidin domain family revisited: new members from prokaryotes and a homology-based fold prediction. Protein Sci (1998) 1.74
TRAMP, a novel apoptosis-mediating receptor with sequence homology to tumor necrosis factor receptor 1 and Fas(Apo-1/CD95). Immunity (1997) 1.74
Cloned mammalian neutral sphingomyelinase: functions in sphingolipid signaling? Proc Natl Acad Sci U S A (1998) 1.73
Transcription of a cloned Xenopus laevis H4 histone gene in the homologous frog oocyte system depends on an evolutionary conserved sequence motif in the -50 region. Nucleic Acids Res (1983) 1.70
A model for structural similarity between different SNARE complexes based on sequence relationships. Trends Cell Biol (1998) 1.61
Signal search analysis: a new method to localize and characterize functionally important DNA sequences. Nucleic Acids Res (1984) 1.60
Biotinylinsulins as potential tools for receptor studies. Proc Natl Acad Sci U S A (1977) 1.58
Significant similarity and dissimilarity in homologous proteins. Mol Biol Evol (1992) 1.57
The COP9/signalosome complex is conserved in fission yeast and has a role in S phase. Curr Biol (1999) 1.55
Cyclin E2: a novel CDK2 partner in the late G1 and S phases of the mammalian cell cycle. Oncogene (1998) 1.51
Unified nomenclature for the COP9 signalosome and its subunits: an essential regulator of development. Trends Genet (2000) 1.51
Experimental analysis and computer prediction of CTF/NFI transcription factor DNA binding sites. J Mol Biol (2000) 1.49
Definition of Munc13-homology-domains and characterization of a novel ubiquitously expressed Munc13 isoform. Biochem J (2000) 1.48
SEView: a Java applet for browsing molecular sequence data. In Silico Biol (1998) 1.47
Avidin binding of carboxyl-substituted biotin and analogues. Biochemistry (1982) 1.43
Genetic basis for clinical expression in multiple sclerosis. Brain (2002) 1.43
Bcl-rambo, a novel Bcl-2 homologue that induces apoptosis via its unique C-terminal extension. J Biol Chem (2001) 1.38
A consensus motif in the RFX DNA binding domain and binding domain mutants with altered specificity. Mol Cell Biol (1996) 1.37
Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA. In Silico Biol (1998) 1.35
The SWISS-PROT protein sequence database: its relevance to human molecular medical research. J Mol Med (Berl) (1997) 1.34
The ENZYME data bank. Nucleic Acids Res (1993) 1.33
An integrated approach to structural genomics. Prog Biophys Mol Biol (2000) 1.33
Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences. Genome Biol (2001) 1.30
Equine herpesvirus-2 E10 gene product, but not its cellular homologue, activates NF-kappaB transcription factor and c-Jun N-terminal kinase. J Biol Chem (1999) 1.30
Correlation of adrenocorticotropic activity of ACTH analogs with degree of binding to an adrenal cortical particulate preparation. Proc Natl Acad Sci U S A (1970) 1.29
PCI complexes: pretty complex interactions in diverse signaling pathways. Trends Plant Sci (2001) 1.29
Natural DNA sequences can form left-handed helices in low salt solution under conditions of topological constraint. J Mol Biol (1982) 1.28
Quantile distributions of amino acid usage in protein classes. Protein Eng (1992) 1.27
Hormone-receptor studies with avidin and biotinylinsulin-avidin complexes. J Biol Chem (1980) 1.26
The rsp5-domain is shared by proteins of diverse functions. FEBS Lett (1995) 1.23
Identification of RELMgamma, a novel resistin-like molecule with a distinct expression pattern. Genomics (2003) 1.17