Published in J Bacteriol on November 01, 1997
Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol (2006) 14.53
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains. J Bacteriol (2002) 8.88
Free recombination within Helicobacter pylori. Proc Natl Acad Sci U S A (1998) 8.06
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev (2007) 4.13
Evolutionary dynamics of full genome content in Escherichia coli. EMBO J (2000) 2.86
Antibiotic resistance in the ECOR collection: integrons and identification of a novel aad gene. Antimicrob Agents Chemother (2000) 2.09
Genetic diversity and population structure of Vibrio cholerae. J Clin Microbiol (1999) 2.00
Sequence diversity of Pseudomonas aeruginosa: impact on population structure and genome evolution. J Bacteriol (2000) 1.98
Accessory DNA in the genomes of representatives of the Escherichia coli reference collection. J Bacteriol (1999) 1.65
Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence. J Clin Microbiol (2002) 1.38
Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs). Proc Natl Acad Sci U S A (2011) 1.36
Traffic at the tmRNA gene. J Bacteriol (2003) 1.12
Identification of genes affecting Salmonella enterica serovar enteritidis infection of chicken macrophages. Infect Immun (2002) 1.12
Cassette-like variation of restriction enzyme genes in Escherichia coli C and relatives. Nucleic Acids Res (2004) 1.11
Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains. J Bacteriol (2001) 1.04
Growth phase-coupled changes of the ribosome profile in natural isolates and laboratory strains of Escherichia coli. J Bacteriol (2000) 1.04
Discrimination within phenotypically closely related definitive types of Salmonella enterica serovar typhimurium by the multiple amplification of phage locus typing technique. J Clin Microbiol (2005) 0.93
Mutators and long-term molecular evolution of pathogenic Escherichia coli O157:H7. Emerg Infect Dis (1999) 0.89
Obscured phylogeny and possible recombinational dormancy in Escherichia coli. BMC Evol Biol (2011) 0.89
The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol (1987) 266.90
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol (1986) 36.06
Adaptive protein evolution at the Adh locus in Drosophila. Nature (1991) 31.65
Standard reference strains of Escherichia coli from natural populations. J Bacteriol (1984) 11.16
Population genetics of polymorphism and divergence. Genetics (1992) 7.72
Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli. J Bacteriol (1990) 7.07
Nucleotide sequence of insertion sequence IS3411, which flanks the citrate utilization determinant of transposon Tn3411. J Bacteriol (1988) 7.00
Molecular genetic relationships of the salmonellae. Appl Environ Microbiol (1996) 5.66
Clonal nature of Salmonella typhi and its genetic relatedness to other salmonellae as shown by multilocus enzyme electrophoresis, and proposal of Salmonella bongori comb. nov. J Clin Microbiol (1989) 5.21
Production of single-stranded DNA templates by exonuclease digestion following the polymerase chain reaction. Nucleic Acids Res (1989) 4.70
Statistical methods of DNA sequence analysis: detection of intragenic recombination or gene conversion. Mol Biol Evol (1985) 4.51
Evolutionary genetics of the proline permease gene (putP) and the control region of the proline utilization operon in populations of Salmonella and Escherichia coli. J Bacteriol (1992) 4.50
Simultaneous editing of multiple nucleic acid and protein sequences with ESEE. Comput Appl Biosci (1989) 4.05
Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution. J Mol Evol (1991) 4.02
Nucleotide polymorphism and evolution in the glyceraldehyde-3-phosphate dehydrogenase gene (gapA) in natural populations of Salmonella and Escherichia coli. Proc Natl Acad Sci U S A (1991) 3.97
Molecular genetic basis of allelic polymorphism in malate dehydrogenase (mdh) in natural populations of Escherichia coli and Salmonella enterica. Proc Natl Acad Sci U S A (1994) 3.90
Relationship between evolutionary rate and cellular location among the Inv/Spa invasion proteins of Salmonella enterica. Proc Natl Acad Sci U S A (1995) 3.32
Identification of a novel genetic element in Escherichia coli K-12. J Bacteriol (1980) 3.26
Chromosomal insertion sites for phages and plasmids. J Bacteriol (1992) 3.14
Variances of the average numbers of nucleotide substitutions within and between populations. Mol Biol Evol (1989) 3.11
Reduced synonymous substitution rate at the start of enterobacterial genes. Nucleic Acids Res (1993) 2.94
Inactivation of isocitrate dehydrogenase by phosphorylation is mediated by the negative charge of the phosphate. J Biol Chem (1987) 2.87
Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria. Proc Natl Acad Sci U S A (1994) 2.26
Regulation of an enzyme by phosphorylation at the active site. Science (1990) 2.25
Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase. Proc Natl Acad Sci U S A (1989) 2.20
Catalytic mechanism of NADP(+)-dependent isocitrate dehydrogenase: implications from the structures of magnesium-isocitrate and NADP+ complexes. Biochemistry (1991) 1.91
Determination of flux through the branch point of two metabolic cycles. The tricarboxylic acid cycle and the glyoxylate shunt. J Biol Chem (1984) 1.91
Comparative genetics of the inv-spa invasion gene complex of Salmonella enterica. J Bacteriol (1997) 1.84
Excision and reintegration of the Escherichia coli K-12 chromosomal element e14. J Bacteriol (1985) 1.80
Electrostatic and steric contributions to regulation at the active site of isocitrate dehydrogenase. Science (1990) 1.45
Evidence for the exchange of segments between genomes during the evolution of lambdoid bacteriophages. Mol Microbiol (1990) 1.44
A gene for DNA invertase and an invertible DNA in Escherichia coli K-12. Gene (1985) 1.39
Attachment site of the genetic element e14. J Bacteriol (1988) 1.36
Lambdoid phages as elements of bacterial genomes (integrase/phage21/Escherichia coli K-12/icd gene). Genetica (1992) 1.30
Molecular cloning of the isocitrate dehydrogenase gene of an extreme thermophile, Thermus thermophilus HB8. Appl Environ Microbiol (1992) 1.27
Phosphorylation inactivates Escherichia coli isocitrate dehydrogenase by preventing isocitrate binding. J Biol Chem (1989) 1.20
Use of the isocitrate dehydrogenase structural gene for attachment of e14 in Escherichia coli K-12. J Bacteriol (1989) 1.19
Protein engineering reveals ancient adaptive replacements in isocitrate dehydrogenase. Proc Natl Acad Sci U S A (1997) 1.18
Analysis of genetic variation by polymerase chain reaction-based nucleotide sequencing. Methods Enzymol (1994) 1.13
Amino acid sequence round the site of phosphorylation in isocitrate dehydrogenase from Escherichia coli ML308. FEBS Lett (1984) 1.09
Complete sequence of IS629. Nucleic Acids Res (1990) 1.08
NADP(+)-isocitrate dehydrogenase from the cyanobacterium Anabaena sp. strain PCC 7120: purification and characterization of the enzyme and cloning, sequencing, and disruption of the icd gene. J Bacteriol (1994) 1.08
Recombination and modular exchange in the genesis of new lambdoid phages. New Biol (1991) 1.06
Characterization of IS1203, an insertion sequence in Escherichia coli O111:H-. Gene (1994) 0.96
Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Appl Environ Microbiol (1986) 24.31
Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc Natl Acad Sci U S A (1997) 15.25
Genetic diversity and structure in Escherichia coli populations. Science (1980) 11.19
Standard reference strains of Escherichia coli from natural populations. J Bacteriol (1984) 11.16
Resolution of recent evolutionary divergence among Escherichia coli from related lineages: the application of pulsed field electrophoresis to molecular epidemiology. J Infect Dis (1990) 8.33
Multilocus genetic structure in natural populations of Escherichia coli. Proc Natl Acad Sci U S A (1983) 7.42
Genetic diversity and temporal variation in the E. coli population of a human host. Genetics (1981) 7.35
Genetic structure of populations of Legionella pneumophila. J Bacteriol (1985) 7.30
Enzyme polymorphism and genetic population structure in Escherichia coli and Shigella. J Gen Microbiol (1983) 7.28
Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli. J Bacteriol (1990) 7.07
Parallel evolution of virulence in pathogenic Escherichia coli. Nature (2000) 6.25
Genetic relationships of serologically nontypable and serotype b strains of Haemophilus influenzae. Infect Immun (1986) 5.92
Molecular genetic relationships of the salmonellae. Appl Environ Microbiol (1996) 5.66
Population genetics of pathogenic bacteria. Microb Pathog (1987) 5.59
Streptococcus pyogenes causing toxic-shock-like syndrome and other invasive diseases: clonal diversity and pyrogenic exotoxin expression. Proc Natl Acad Sci U S A (1991) 5.46
Intercontinental spread of a genetically distinctive complex of clones of Neisseria meningitidis causing epidemic disease. Proc Natl Acad Sci U S A (1986) 5.39
Genetic structure of Neisseria meningitidis populations in relation to serogroup, serotype, and outer membrane protein pattern. J Bacteriol (1987) 5.30
Evidence for clonal population structure in Escherichia coli. Proc Natl Acad Sci U S A (1984) 5.08
Genetic characterization of clones of the bacterium Listeria monocytogenes causing epidemic disease. Proc Natl Acad Sci U S A (1989) 5.00
Evolutionary genetics of the proline permease gene (putP) and the control region of the proline utilization operon in populations of Salmonella and Escherichia coli. J Bacteriol (1992) 4.50
Genetic diversity and relationships in populations of Bordetella spp. J Bacteriol (1986) 4.48
A population genetic framework for the study of invasive diseases caused by serotype b strains of Haemophilus influenzae. Proc Natl Acad Sci U S A (1985) 4.48
Geographic components of linkage disequilibrium in natural populations of Escherichia coli. Mol Biol Evol (1983) 4.11
Genetic diversity in relation to serotype in Escherichia coli. Infect Immun (1985) 4.11
Nucleotide polymorphism and evolution in the glyceraldehyde-3-phosphate dehydrogenase gene (gapA) in natural populations of Salmonella and Escherichia coli. Proc Natl Acad Sci U S A (1991) 3.97
Is Mycobacterium tuberculosis 15,000 years old? J Infect Dis (1994) 3.97
Molecular genetic basis of allelic polymorphism in malate dehydrogenase (mdh) in natural populations of Escherichia coli and Salmonella enterica. Proc Natl Acad Sci U S A (1994) 3.90
Salmonella reference collection B (SARB): strains of 37 serovars of subspecies I. J Gen Microbiol (1993) 3.85
A single clone of Staphylococcus aureus causes the majority of cases of toxic shock syndrome. Proc Natl Acad Sci U S A (1990) 3.76
Identification of a high-virulence clone of type III Streptococcus agalactiae (group B Streptococcus) causing invasive neonatal disease. Proc Natl Acad Sci U S A (1989) 3.66
Genetic relationships and clonal structure of strains of Escherichia coli causing neonatal septicemia and meningitis. Infect Immun (1986) 3.57
Complete genomic sequence of Pasteurella multocida, Pm70. Proc Natl Acad Sci U S A (2001) 3.51
Protein polymorphism and genic heterozygosity in a wild population of the house mouse (Mus musculus). Genetics (1969) 3.40
Genotypic and phenotypic changes in the emergence of Escherichia coli O157:H7. J Infect Dis (1998) 3.35
Sequence invariance of the antigen-coding central region of the phase 1 flagellar filament gene (fliC) among strains of Salmonella typhimurium. J Bacteriol (1990) 3.33
Relationship between evolutionary rate and cellular location among the Inv/Spa invasion proteins of Salmonella enterica. Proc Natl Acad Sci U S A (1995) 3.32
Genetic diversity and relationships among strains of Escherichia coli in the intestine and those causing urinary tract infections. Prog Allergy (1983) 3.12
RAPD (arbitrary primer) PCR is more sensitive than multilocus enzyme electrophoresis for distinguishing related bacterial strains. Nucleic Acids Res (1993) 3.10
Clonal population structure of encapsulated Haemophilus influenzae. Infect Immun (1988) 3.03
Reference collection of strains of the Salmonella typhimurium complex from natural populations. J Gen Microbiol (1991) 3.00
Genetic diversity and relationships among isolates of Rhizobium leguminosarum biovar phaseoli. Appl Environ Microbiol (1988) 2.98
Behavior and genetic variation in natural populations. Am Zool (1970) 2.86
Genetic structure of natural populations of the nitrogen-fixing bacterium Rhizobium meliloti. Appl Environ Microbiol (1990) 2.84
Pathogenesis and evolution of virulence in enteropathogenic and enterohemorrhagic Escherichia coli. J Clin Invest (2001) 2.80
Recombination of Salmonella phase 1 flagellin genes generates new serovars. J Bacteriol (1990) 2.80
Genetic diversity and relationships of two pathovars of Pseudomonas syringae. J Gen Microbiol (1988) 2.80
Genetic and phenotypic analysis of Escherichia coli with enteropathogenic characteristics isolated from Seattle children. J Infect Dis (1997) 2.78
Evolutionary genetics of the encapsulated strains of Haemophilus influenzae. Proc Natl Acad Sci U S A (1988) 2.68
Clonal diversity and host distribution in Bordetella bronchiseptica. J Bacteriol (1987) 2.59
Phylogenetic analysis of enteroaggregative and diffusely adherent Escherichia coli. Infect Immun (1999) 2.51
Molecular evolution and mosaic structure of alpha, beta, and gamma intimins of pathogenic Escherichia coli. Mol Biol Evol (1999) 2.44
Recombinational basis of serovar diversity in Salmonella enterica. Proc Natl Acad Sci U S A (1994) 2.35
Paleoepidemiologic investigation of Legionnaires disease at Wadsworth Veterans Administration Hospital by using three typing methods for comparison of legionellae from clinical and environmental sources. J Clin Microbiol (1986) 2.34
Elephant seals: genetic variation and near extinction. Science (1974) 2.29
Clonal analysis of Escherichia coli O2:K1 isolated from diseased humans and animals. Infect Immun (1986) 2.27
Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria. Proc Natl Acad Sci U S A (1994) 2.26
Clonal diversity of Neisseria meningitidis from a population of asymptomatic carriers. Infect Immun (1988) 2.14
Characterization of Streptococcus agalactiae strains by multilocus enzyme genotype and serotype: identification of multiple virulent clone families that cause invasive neonatal disease. J Clin Microbiol (1995) 2.13
Allelic variation in human mitochondrial genes based on patterns of restriction site polymorphism. Proc Natl Acad Sci U S A (1986) 2.13
Distribution of multilocus genotypes of Escherichia coli within and between host families. J Hyg (Lond) (1984) 2.10
Legionella pneumophila serogroup Lansing 3 isolated from a patient with fatal pneumonia, and descriptions of L. pneumophila subsp. pneumophila subsp. nov., L. pneumophila subsp. fraseri subsp. nov., and L. pneumophila subsp. pascullei subsp. nov. J Clin Microbiol (1988) 2.06
Genetic relationships and clonal population structure of serotype 2 strains of Neisseria meningitidis. Infect Immun (1987) 2.04
Genetic relationships among the oral streptococci. J Bacteriol (1987) 2.02
Genetic diversity and population structure of Vibrio cholerae. J Clin Microbiol (1999) 2.00
Molecular population genetic analysis of Staphylococcus aureus recovered from cows. J Clin Microbiol (1995) 1.98
Clonal relationships among classic enteropathogenic Escherichia coli (EPEC) belong to different O groups. J Infect Dis (1990) 1.96
Restriction fragment length polymorphisms among uropathogenic Escherichia coli isolates: pap-related sequences compared with rrn operons. Infect Immun (1990) 1.95
Clonal relationships among bloodstream isolates of Escherichia coli. Infect Immun (1995) 1.95
Sequence diversity of flagellin (fliC) alleles in pathogenic Escherichia coli. J Bacteriol (1999) 1.92
Genetic and phenotypic diversity among ampicillin-resistant, non-beta-lactamase-producing, nontypeable Haemophilus influenzae isolates. Infect Immun (1987) 1.86
Comparative genetics of the inv-spa invasion gene complex of Salmonella enterica. J Bacteriol (1997) 1.84
Diversity and sources of rapidly growing mycobacteria associated with infections following cardiac surgery. J Infect Dis (1989) 1.84
Biochemical genetics of hybridisation in European house mice. Heredity (Edinb) (1973) 1.79
Clonal diversity in Haemophilus pleuropneumoniae. Infect Immun (1987) 1.78
Insertion site of the locus of enterocyte effacement in enteropathogenic and enterohemorrhagic Escherichia coli differs in relation to the clonal phylogeny of the strains. FEMS Microbiol Lett (1997) 1.75
Escherichia coli serogroup O111 includes several clones of diarrheagenic strains with different virulence properties. Infect Immun (1994) 1.74
Phylogenetic position of Rhizobium sp. strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes. Appl Environ Microbiol (1992) 1.69
Genetic population structure, clonal phylogeny, and pathogenicity of Salmonella paratyphi B. Infect Immun (1990) 1.68
Characterization and clonal distribution of four alleles of the speA gene encoding pyrogenic exotoxin A (scarlet fever toxin) in Streptococcus pyogenes. J Exp Med (1991) 1.66
Conversion of Pseudomonas aeruginosa to the phenotype characteristic of strains from patients with cystic fibrosis. J Clin Microbiol (1990) 1.60
Urogenital, maternal and neonatal isolates of Haemophilus influenzae: identification of unusually virulent serologically non-typable clone families and evidence for a new Haemophilus species. J Gen Microbiol (1990) 1.59
Genetic structure of populations of Porphyromonas gingivalis associated with periodontitis and other oral infections. Infect Immun (1993) 1.58
Sequencing errors and molecular evolutionary analysis. Mol Biol Evol (1992) 1.58
Acquisition of the rfb-gnd cluster in evolution of Escherichia coli O55 and O157. J Bacteriol (2000) 1.58