Relationship between codon usage and sequence-dependent curvature of genomes.

PubWeight™: 0.86‹?›

🔗 View Article (PMID 10027193)

Published in Microb Comp Genomics on January 01, 1998

Authors

R Jáuregui1, F O'Reilly, F Bolivar, E Merino

Author Affiliations

1: Laboratorio de Biología Computacional, Centro de Investigación sobre Fijación de Nitrógeno, Morelos, México.

Articles by these authors

Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. Gene (1977) 114.87

Construction and characterization of new cloning vehicles. III. Derivatives of plasmid pBR322 carrying unique Eco RI sites for selection of Eco RI generated recombinant DNA molecules. Gene (1978) 17.08

Construction and characterization of new cloning vehicles. I. Ampicillin-resistant derivatives of the plasmid pMB9. Gene (1977) 12.93

Construction and characterization of new cloning vehicles. IV. Deletion derivatives of pBR322 and pBR325. Gene (1980) 12.14

Plasmids of Escherichia coli as cloning vectors. Methods Enzymol (1979) 11.41

Expression in Escherichia coli of a chemically synthesized gene for the hormone somatostatin. Science (1977) 9.28

A general method for the purification of restriction enzymes. Nucleic Acids Res (1978) 7.92

Plasmid vector pBR322 and its special-purpose derivatives--a review. Gene (1986) 6.52

Expression in Escherichia coli of chemically synthesized genes for human insulin. Proc Natl Acad Sci U S A (1979) 4.72

Construction and characterization of new cloning vehicles. VI. Plasmid pBR329, a new derivative of pBR328 lacking the 482-base-pair inverted duplication. Gene (1982) 4.36

Construction and characterization of new cloning vehicles. V. Mobilization and coding properties of pBR322 and several deletion derivatives including pBR327 and pBR328. Gene (1981) 2.72

Origin of replication of pBR345 plasmid DNA. Proc Natl Acad Sci U S A (1977) 2.40

Pathway engineering for the production of aromatic compounds in Escherichia coli. Nat Biotechnol (1996) 2.36

Diagnosis of intestinal amebiasis using salivary IgA antibody detection. J Infect Dis (1990) 2.33

Characterizing wild-type and mutant promoters of the tetracycline resistance gene in pBR313. Nucleic Acids Res (1979) 2.23

GeConT: gene context analysis. Bioinformatics (2004) 1.68

Peptides and genes coding for scorpion toxins that affect ion-channels. Biochimie (2000) 1.50

Determination of the nucleotide sequence for the glutamate synthase structural genes of Escherichia coli K-12. Gene (1987) 1.41

Hepatitis C virus infection complicating lupus nephritis. Nephrol Dial Transplant (1996) 1.39

A Bacillus subtilis operon containing genes of unknown function senses tRNATrp charging and regulates expression of the genes of tryptophan biosynthesis. Proc Natl Acad Sci U S A (2000) 1.38

ColE1 hybrid plasmids containing Escherichia coli genes involved in the biosynthesis of glutamate and glutamine. Plasmid (1980) 1.30

A Bacillus subtilis gene of previously unknown function, yhaG, is translationally regulated by tryptophan-activated TRAP and appears to be involved in tryptophan transport. J Bacteriol (2000) 1.27

Characterization of a site-specific restriction endonuclease SphI from Streptomyces phaeochromogenes. Gene (1980) 1.24

Cloning, sequencing, and expression in Ficoll-generated minicells of an Escherichia coli heat-stable enterotoxin gene. Plasmid (1988) 1.18

Characterization of sugar mixtures utilization by an Escherichia coli mutant devoid of the phosphotransferase system. Appl Microbiol Biotechnol (2001) 1.15

A family of removable cassettes designed to obtain antibiotic-resistance-free genomic modifications of Escherichia coli and other bacteria. Gene (2000) 1.14

The role of penicillin amidases in nature and in industry. Trends Biochem Sci (1991) 1.13

Complete nucleotide sequence of the glutamate dehydrogenase gene from Escherichia coli K-12. Gene (1984) 1.12

Adenosquamous carcinoma of the duodenum. An immunohistochemical study. Pathol Res Pract (1993) 1.06

Cloning and physical mapping of the glnA gene of Escherichia coli K-12. Gene (1980) 1.05

Tight linkage of genes that encode the two glutamate synthase subunits of Escherichia coli K-12. J Bacteriol (1980) 1.04

The plasmid, pBR322. Biotechnology (1988) 1.02

gltF, a member of the gltBDF operon of Escherichia coli, is involved in nitrogen-regulated gene expression. Mol Microbiol (1992) 1.01

New insights into regulation of the tryptophan biosynthetic operon in Gram-positive bacteria. Trends Genet (2005) 1.00

Carbon regulation and the role in nature of the Escherichia coli penicillin acylase (pac) gene. Mol Microbiol (1992) 0.98

pBRINT-Ts: a plasmid family with a temperature-sensitive replicon, designed for chromosomal integration into the lacZ gene of Escherichia coli. Gene (1998) 0.97

Design and construction of expression plasmid vectors in Escherichia coli. Methods Enzymol (1990) 0.94

Recombinant plasmids carrying the glutamate dehydrogenase structural gene from Escherichia coli K-12. Gene (1982) 0.93

Deletion of a repetitive extragenic palindromic (REP) sequence downstream from the structural gene of Escherichia coli glutamate dehydrogenase affects the stability of its mRNA. Gene (1987) 0.93

Identification of a functional promoter for the Escherichia coli gdhA gene and its regulation. Gene (1988) 0.93

GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways. Nucleic Acids Res (2008) 0.90

Construction of protein overproducer strains in Bacillus subtilis by an integrative approach. Appl Microbiol Biotechnol (2001) 0.90

Structural organization of the genes that encode two glutamate synthase subunits of Escherichia coli. Gene (1983) 0.89

What has happened to people affected by thalidomide 50 years on? Ir J Med Sci (2011) 0.89

Repetitive extragenic palindromic (REP) sequences in the Escherichia coli gdhA gene. Gene (1985) 0.87

A common precursor for the two subunits of the penicillin acylase from Escherichia coli ATCC11105. Gene (1985) 0.87

Association between the NOS3 (-786 T/C) and the ACE (I/D) DNA genotypes and early coronary artery disease. Nitric Oxide (2001) 0.87

Genome analysis of Escherichia coli promoter sequences evidences that DNA static curvature plays a more important role in gene transcription than has previously been anticipated. Genomics (2006) 0.87

Construction and characterization of new cloning vehicles. VII. Construction of plasmid pBR327par, a completely sequenced, stable derivative of pBR327 containing the par locus of pSC101. Gene (1984) 0.85

Biochemical and genetic characterization of a carbamyl phosphate synthetase mutant of Escherichia coli K12. J Gen Microbiol (1976) 0.85

Laboratory metabolic evolution improves acetate tolerance and growth on acetate of ethanologenic Escherichia coli under non-aerated conditions in glucose-mineral medium. Appl Microbiol Biotechnol (2012) 0.84

A pBRINT family of plasmids for integration of cloned DNA into the Escherichia coli chromosome. Gene (1996) 0.84

The ribonucleoside diphosphate reductase gene (nrdA) of Escherichia coli carries a repetitive extragenic palindromic (REP) sequence in its 3' structural terminus. Mol Microbiol (1989) 0.83

[Visceral leishmaniasis: a comparative study of patients with and without human immunodeficiency virus infection]. Enferm Infecc Microbiol Clin (1999) 0.83

Characterization of the regulatory region of the Escherichia coli penicillin acylase structural gene. Gene (1986) 0.83

Recovery of DNA from agarose gels stained with methylene blue. Biotechniques (1992) 0.82

Amino acid sequence analysis of the glutamate synthase enzyme from Escherichia coli K-12. Protein Seq Data Anal (1989) 0.82

Cloning and expression of the Entamoeba histolytica ERD2 gene. Mol Biochem Parasitol (1998) 0.82

Effect of ultraviolet light on the release of neuropeptides and neuroendocrine hormones in the skin: mediators of photodermatitis and cutaneous inflammation. J Investig Dermatol Symp Proc (1999) 0.81

Identification of a putative hypothalamic mRNA coding for somatostatin and of its product in cell-free translation. Biochem Biophys Res Commun (1980) 0.81

Primary esophageal lymphoepithelioma. Tumori (2000) 0.81

Elucidating metabolic pathways and digging for genes of unknown function in microbial communities: the riboswitch approach. Clin Microbiol Infect (2012) 0.80

Nucleotide sequence of the promoter and amino-terminal coding region of the glutamate dehydrogenase structural gene of Escherichia coli. Gene (1983) 0.80

Cloning and characterization of cDNAs that code for Na(+)-channel-blocking toxins of the scorpion Centruroides noxius Hoffmann. Gene (1993) 0.80

Relationship between whole proteome aminoacid composition and static DNA curvature. Microb Comp Genomics (2000) 0.79

New insights on the comma-less theory. Orig Life Evol Biosph (1992) 0.78

Nosocomial outbreak of scabies clinically resistant to lindane. Infect Control Hosp Epidemiol (1997) 0.78

[Evaluation of viral load and antigenemia as markers for relapse cytomegalovirus infection in renal transplant recipients]. Nefrologia (2007) 0.78

Characterization of the 5' subtilisin (aprE) regulatory region from Bacillus subtilis. FEMS Microbiol Lett (2000) 0.78

Impact of vitamin D insufficiency on insulin homeostasis and beta cell function in nondiabetic male HIV-infected patients. HIV Med (2013) 0.78

Progressive multifocal leukoencephalopathy treated with cidofovir in HIV-infected patients receiving highly active anti-retroviral therapy. J Infect (2000) 0.78

Multiple endocrine neoplasia type 2A: a Northern Ireland and Australian family. Henry Ford Hosp Med J (1987) 0.78

Recombinant protein production in cultures of an Escherichia coli trp- strain. Appl Microbiol Biotechnol (1993) 0.78

Genes and peptides from the scorpion Centruroides sculpturatus Ewing, that recognize Na(+)-channels. Toxicon (2001) 0.78

Acalculous cholecystitis associated with Plasmodium falciparum malaria. Clin Infect Dis (2000) 0.77

Expression in Escherichia coli of a chemically synthesized gene for the hormone somatostatin. 1977. Biotechnology (1992) 0.77

The genomic region encoding toxin gamma from the scorpion Tityus serrulatus contains an intron. FEBS Lett (1993) 0.77

[Pelvic inflammatory disease caused by Chlamydia trachomatis as a cause of ascites]. Enferm Infecc Microbiol Clin (2000) 0.76

There's a hole in the bucket: an analysis of the impact of the medical card review process on patient entitlement to free health care. Ir Med J (2008) 0.76

Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. 1977. Biotechnology (1992) 0.76

Drug toxicity or syndrome of immune restoration causing fulminant cirrhosis after HAART-induced immune recovery. Eur J Clin Microbiol Infect Dis (2002) 0.76

[Cryptosporidiosis. A rare infection in renal transplantation]. Nefrologia (2006) 0.75

EUV spectral analysis of ns-laser produced bismuth plasmas at 8-17 nm. Opt Express (2017) 0.75

[Evaluation of the retention of dental fissure cleft sealants three years after their application to 13-14 year old schoolchildren]. An Sist Sanit Navar (2003) 0.75

Cytomegalovirus polyradiculopathy presenting as bilateral radial nerve palsies in a patient with AIDS. Eur J Clin Microbiol Infect Dis (1999) 0.75

[Improvement of severe psoriasis in a HIV(+) patient]. An Med Interna (2000) 0.75

[Electron microscopy of the suprarenal of Didelphys marsupialis. I. Intracytoplasmic microtubular formations in the cortical layer]. Trab Inst Cajal Invest Biol (1971) 0.75

Antibody response to Plasmodium vivax antigens in human malaria. Am J Trop Med Hyg (1994) 0.75

Origin of hyperamylasaemia in HIV-infected patients. AIDS (1996) 0.75

Changing university roles in the century of biotechnology. Nat Biotechnol (1998) 0.75

[Bacteremic pneumonia caused by Haemophilus influenzae cured with oral erythromycin]. Enferm Infecc Microbiol Clin (1990) 0.75