Published in Nature on May 27, 1999
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The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proc Natl Acad Sci U S A (2002) 3.19
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A phylogenomic approach to microbial evolution. Nucleic Acids Res (2001) 3.06
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Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice. PLoS Genet (2008) 2.90
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Predicted highly expressed genes of diverse prokaryotic genomes. J Bacteriol (2000) 2.60
A complete sequence of the T. tengcongensis genome. Genome Res (2002) 2.60
A clustering method for repeat analysis in DNA sequences. Genome Biol (2001) 2.59
The value of complete microbial genome sequencing (you get what you pay for). J Bacteriol (2002) 2.58
Unifying vertical and nonvertical evolution: a stochastic ARG-based framework. Syst Biol (2009) 2.40
Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Science (2009) 2.33
Examining bacterial species under the specter of gene transfer and exchange. Proc Natl Acad Sci U S A (2005) 2.28
The phage-host arms race: shaping the evolution of microbes. Bioessays (2011) 2.27
Comparative genomic analyses of the bacterial phosphotransferase system. Microbiol Mol Biol Rev (2005) 2.26
Widespread occurrence of structurally diverse tetraether membrane lipids: evidence for the ubiquitous presence of low-temperature relatives of hyperthermophiles. Proc Natl Acad Sci U S A (2000) 2.23
Evolution of gene order conservation in prokaryotes. Genome Biol (2001) 2.19
Prokaryotic evolution and the tree of life are two different things. Biol Direct (2009) 2.17
The iron-hydrogenase of Thermotoga maritima utilizes ferredoxin and NADH synergistically: a new perspective on anaerobic hydrogen production. J Bacteriol (2009) 2.12
Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores. J Bacteriol (2002) 2.12
Do orthologous gene phylogenies really support tree-thinking? BMC Evol Biol (2005) 2.10
Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily. Nucleic Acids Res (2002) 2.08
Identification of thermophilic species by the amino acid compositions deduced from their genomes. Nucleic Acids Res (2001) 2.08
Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing prokaryotes. J Bacteriol (2001) 2.05
Analysis of MinC reveals two independent domains involved in interaction with MinD and FtsZ. J Bacteriol (2000) 1.98
Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution. Proc Natl Acad Sci U S A (2007) 1.96
Horizontal gene transfer between bacteria and animals. Trends Genet (2011) 1.96
Sodium ion cycle in bacterial pathogens: evidence from cross-genome comparisons. Microbiol Mol Biol Rev (2001) 1.95
How big is the iceberg of which organellar genes in nuclear genomes are but the tip? Philos Trans R Soc Lond B Biol Sci (2003) 1.95
Darwinian evolution in the light of genomics. Nucleic Acids Res (2009) 1.92
A specialized version of the HD hydrolase domain implicated in signal transduction. J Mol Microbiol Biotechnol (1999) 1.86
Synonymous codon usage is subject to selection in thermophilic bacteria. Nucleic Acids Res (2002) 1.86
Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus. Appl Environ Microbiol (2008) 1.85
Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism. Nucleic Acids Res (2004) 1.82
Crystal structure of the middle and C-terminal domains of the flagellar rotor protein FliG. EMBO J (2002) 1.79
Archaeal shikimate kinase, a new member of the GHMP-kinase family. J Bacteriol (2001) 1.79
The cobweb of life revealed by genome-scale estimates of horizontal gene transfer. PLoS Biol (2005) 1.79
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales. Proc Natl Acad Sci U S A (2009) 1.78
Evolution of the yeast protein interaction network. Proc Natl Acad Sci U S A (2003) 1.78
Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. Microb Ecol (2010) 1.74
Physics and evolution of thermophilic adaptation. Proc Natl Acad Sci U S A (2005) 1.72
Structural analysis of the domain interface in DrrB, a response regulator of the OmpR/PhoB subfamily. J Bacteriol (2003) 1.71
Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox. Genome Biol (2004) 1.71
Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima. J Bacteriol (2002) 1.70
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. Genome Biol (2009) 1.69
Rooting the tree of life by transition analyses. Biol Direct (2006) 1.66
Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus. Proc Natl Acad Sci U S A (2003) 1.66
Crystal structure of the flagellar rotor protein FliN from Thermotoga maritima. J Bacteriol (2005) 1.65
Horizontal gene transfer in evolution: facts and challenges. Proc Biol Sci (2009) 1.65
DarkHorse: a method for genome-wide prediction of horizontal gene transfer. Genome Biol (2007) 1.64
Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus. Nucleic Acids Res (2004) 1.64
The modern concept of the procaryote. J Bacteriol (2009) 1.64
Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance. BMC Evol Biol (2005) 1.63
Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy. Proc Natl Acad Sci U S A (2004) 1.62
Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. Genome Biol (2003) 1.62
Mapping the Sinorhizobium meliloti 1021 solute-binding protein-dependent transportome. Proc Natl Acad Sci U S A (2006) 1.61
Flagellin polymerisation control by a cytosolic export chaperone. J Mol Biol (2001) 1.61
Discordant phylogenies within the rrn loci of Rhizobia. J Bacteriol (2003) 1.60
Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium. J Bacteriol (2010) 1.60
Evolution of gene fusions: horizontal transfer versus independent events. Genome Biol (2002) 1.60
In silico method for modelling metabolism and gene product expression at genome scale. Nat Commun (2012) 1.58
Genome-wide molecular clock and horizontal gene transfer in bacterial evolution. J Bacteriol (2004) 1.58
The sequence of the human genome. Science (2001) 101.55
The genome sequence of Drosophila melanogaster. Science (2000) 74.32
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science (1995) 68.34
Improved microbial gene identification with GLIMMER. Nucleic Acids Res (1999) 51.34
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science (1996) 41.35
A whole-genome assembly of Drosophila. Science (2000) 38.48
The transcriptional landscape of the mammalian genome. Science (2005) 37.63
The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature (1997) 34.00
The minimal gene complement of Mycoplasma genitalium. Science (1995) 32.41
A simple method for DNA restriction site mapping. Nucleic Acids Res (1976) 22.24
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science (2001) 21.99
TIGRFAMs: a protein family resource for the functional identification of proteins. Nucleic Acids Res (2001) 20.84
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DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature (2000) 19.93
A restriction enzyme from Hemophilus influenzae. I. Purification and general properties. J Mol Biol (1970) 19.69
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature (1997) 19.08
Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science (2000) 16.04