Phylogenetic analysis of L4-mediated autogenous control of the S10 ribosomal protein operon.

PubWeight™: 1.08‹?› | Rank: Top 10%

🔗 View Article (PMC 103642)

Published in J Bacteriol on October 01, 1999

Authors

T Allen1, P Shen, L Samsel, R Liu, L Lindahl, J M Zengel

Author Affiliations

1: Department of Biological Sciences, University of Maryland Baltimore County, Baltimore, Maryland 21250, USA.

Articles citing this

Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Genome Biol (2001) 1.94

A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes. PLoS Comput Biol (2007) 1.53

Genomic location of the major ribosomal protein gene locus determines Vibrio cholerae global growth and infectivity. PLoS Genet (2015) 1.46

Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias. Genome Res (2005) 1.43

Non-canonical mechanism for translational control in bacteria: synthesis of ribosomal protein S1. EMBO J (2001) 1.26

Ribosomal protein S15 represses its own translation via adaptation of an rRNA-like fold within its mRNA. EMBO J (2003) 1.20

Crystal structure of ribosomal protein L4 shows RNA-binding sites for ribosome incorporation and feedback control of the S10 operon. EMBO J (2000) 1.13

A new regulatory circuit in ribosomal protein operons: S2-mediated control of the rpsB-tsf expression in vivo. RNA (2008) 1.08

Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria. Nucleic Acids Res (2013) 1.04

Gene discovery within the planctomycete division of the domain Bacteria using sequence tags from genomic DNA libraries. Genome Biol (2002) 0.97

RNA-structural mimicry in Escherichia coli ribosomal protein L4-dependent regulation of the S10 operon. J Biol Chem (2003) 0.95

A key role for the mRNA leader structure in translational control of ribosomal protein S1 synthesis in gamma-proteobacteria. Nucleic Acids Res (2003) 0.94

Surprising flexibility of leader RNA determinants for r-protein L4-mediated transcription termination in the Escherichia coil S10 operon. RNA (2002) 0.84

S6:S18 ribosomal protein complex interacts with a structural motif present in its own mRNA. RNA (2013) 0.83

Regulation of ribosomal protein synthesis in Vibrio cholerae. J Bacteriol (2004) 0.83

Many nonuniversal archaeal ribosomal proteins are found in conserved gene clusters. Archaea (2009) 0.81

Regulation of the rplY gene encoding 5S rRNA binding protein L25 in Escherichia coli and related bacteria. RNA (2015) 0.80

Articles cited by this

Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (1970) 1528.65

DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A (1977) 790.54

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science (1995) 68.34

Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J Bacteriol (1995) 46.37

The RDP (Ribosomal Database Project). Nucleic Acids Res (1997) 12.94

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. Proc Natl Acad Sci U S A (1994) 8.06

Selfish operons: horizontal transfer may drive the evolution of gene clusters. Genetics (1996) 5.88

Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria. Science (1997) 4.53

DNA sequences of promoter regions for the str and spc ribosomal protein operons in E. coli. Cell (1978) 2.91

Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli. Prog Nucleic Acid Res Mol Biol (1994) 2.84

DNA sequence of the promoter region for the alpha ribosomal protein operon in Escherichia coli. J Biol Chem (1980) 2.80

Protein L4 of the E. coli ribosome regulates an eleven gene r protein operon. Cell (1980) 2.60

Gene order is not conserved in bacterial evolution. Trends Genet (1996) 2.44

Genome structure of mycobacteriophage D29: implications for phage evolution. J Mol Biol (1998) 2.30

Genome plasticity as a paradigm of eubacteria evolution. J Mol Evol (1997) 2.29

Operon-specific regulation of ribosomal protein synthesis in Escherichia coli. Proc Natl Acad Sci U S A (1979) 2.19

Genetic mapping of a mutation causing an alteration in Bacillus subtilis ribosomal protein S4. Mol Gen Genet (1984) 1.83

Regulation of the S10 ribosomal protein operon in E. coli: nucleotide sequence at the start of the operon. Cell (1981) 1.77

Prokaryotic genomes: the emerging paradigm of genome-based microbiology. Curr Opin Genet Dev (1997) 1.55

Autogenous control of the S10 ribosomal protein operon of Escherichia coli: genetic dissection of transcriptional and posttranscriptional regulation. Proc Natl Acad Sci U S A (1987) 1.48

The rpsD gene, encoding ribosomal protein S4, is autogenously regulated in Bacillus subtilis. J Bacteriol (1991) 1.42

Genetic dissection of stringent control and nutritional shift-up response of the Escherichia coli S10 ribosomal protein operon. J Mol Biol (1985) 1.39

Tempo, mode, the progenote, and the universal root. Proc Natl Acad Sci U S A (1994) 1.38

Cloning and analysis of the Bacillus subtilis rpsD gene, encoding ribosomal protein S4. J Bacteriol (1990) 1.24

Cloning and analysis of the spc ribosomal protein operon of Bacillus subtilis: comparison with the spc operon of Escherichia coli. Nucleic Acids Res (1989) 1.13

Analysis of the Bacillus subtilis S10 ribosomal protein gene cluster identifies two promoters that may be responsible for transcription of the entire 15-kilobase S10-spc-alpha cluster. J Bacteriol (1997) 1.13

Secondary structure of the leader transcript from the Escherichia coli S10 ribosomal protein operon. Nucleic Acids Res (1988) 1.10

Role of attenuation in growth rate-dependent regulation of the S10 r-protein operon of E. coli. EMBO J (1984) 1.07

Escherichia coli ribosomal protein L4 stimulates transcription termination at a specific site in the leader of the S10 operon independent of L4-mediated inhibition of translation. J Mol Biol (1990) 1.07

Ribosomal protein L4 stimulates in vitro termination of transcription at a NusA-dependent terminator in the S10 operon leader. Proc Natl Acad Sci U S A (1990) 1.03

Role of NusA in L4-mediated attenuation control of the S10 r-protein operon of Escherichia coli. J Mol Biol (1995) 1.01

Ribosomal protein L4 and transcription factor NusA have separable roles in mediating terminating of transcription within the leader of the S10 operon of Escherichia coli. Genes Dev (1992) 1.01

RNA determinants required for L4-mediated attenuation control of the S10 r-protein operon of Escherichia coli. J Mol Biol (1995) 1.00

Autogenous translational regulation of the ribosomal MvaL1 operon in the archaebacterium Methanococcus vannielii. J Bacteriol (1994) 0.98

A hairpin structure upstream of the terminator hairpin required for ribosomal protein L4-mediated attenuation control of the S10 operon of Escherichia coli. J Bacteriol (1996) 0.98

Genetic and transcriptional organization of the Bacillus subtilis spc-alpha region. Gene (1996) 0.96

Transcriptional organization of the S10, spc and alpha operons of Escherichia coli. Biochim Biophys Acta (1990) 0.94

Relationship between the concentration of nucleoside triphosphates and the rate of synthesis of RNA. J Mol Biol (1973) 0.93

Ribosomal protein L4 from Escherichia coli utilizes nonidentical determinants for its structural and regulatory functions. RNA (1996) 0.91

Regulation of the Escherichia coli S10 ribosomal protein operon by heterologous L4 ribosomal proteins. Biochem Cell Biol (1996) 0.86

Autogenous control is not sufficient to ensure steady-state growth rate-dependent regulation of the S10 ribosomal protein operon of Escherichia coli. J Bacteriol (1990) 0.83

Ribosomal protein L4 of Escherichia coli: in vitro analysis of L4-mediated attenuation control. Biochimie (1991) 0.83

Articles by these authors

Identification of a major co-receptor for primary isolates of HIV-1. Nature (1996) 23.81

Y chromosome sequence variation and the history of human populations. Nat Genet (2000) 8.34

Homologous recombination in Escherichia coli: dependence on substrate length and homology. Genetics (1986) 7.97

The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Ann Hum Genet (2001) 6.24

Identification of two copies of the gene for the elongation factor EF-Tu in E. coli. Nature (1975) 5.70

Characterization of hybrid plasmids carrying individual ribosomal ribonucleic acid transcription units of Escherichia coli. J Bacteriol (1977) 5.37

Sindbis virus: an efficient, broad host range vector for gene expression in animal cells. Science (1989) 4.84

Control of inducible chemoresistance: enhanced anti-tumor therapy through increased apoptosis by inhibition of NF-kappaB. Nat Med (1999) 4.40

Cytoreductive surgery combined with perioperative intraperitoneal chemotherapy for the management of peritoneal carcinomatosis from colorectal cancer: a multi-institutional study. J Clin Oncol (2004) 4.15

Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age. Am J Hum Genet (1999) 3.60

Ribosomal genes in Escherichia coli. Annu Rev Genet (1986) 3.47

Synthesis of long prebiotic oligomers on mineral surfaces. Nature (1996) 3.35

Purification and cloning of aggrecanase-1: a member of the ADAMTS family of proteins. Science (1999) 3.22

Recent common ancestry of human Y chromosomes: evidence from DNA sequence data. Proc Natl Acad Sci U S A (2000) 3.14

Growth rate of polypeptide chains as a function of the cell growth rate in a mutant of Escherichia coli 15. J Mol Biol (1971) 3.08

Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli. Prog Nucleic Acid Res Mol Biol (1994) 2.84

SCH 503034, a mechanism-based inhibitor of hepatitis C virus NS3 protease, suppresses polyprotein maturation and enhances the antiviral activity of alpha interferon in replicon cells. Antimicrob Agents Chemother (2006) 2.75

The RNA of RNase MRP is required for normal processing of ribosomal RNA. Proc Natl Acad Sci U S A (1994) 2.68

Transfer RNA genes between 16S and 23S rRNA genes in rRNA transcription units of E. coli. Cell (1976) 2.68

A nutrient-sensing pathway regulates leptin gene expression in muscle and fat. Nature (1998) 2.66

Cluster of genes in Escherichia coli for ribosomal proteins, ribosomal RNA, and RNA polymerase subunits. Proc Natl Acad Sci U S A (1975) 2.63

Protein L4 of the E. coli ribosome regulates an eleven gene r protein operon. Cell (1980) 2.60

Macrophage tropism of human immunodeficiency virus type 1 and utilization of the CC-CKR5 coreceptor. J Virol (1997) 2.59

Identification of genetic elements associated with muscle structure in the nematode Caenorhabditis elegans. Cell Motil (1980) 2.43

Mapping of ribosomal protein genes by in vitro protein synthesis using DNA fragments of lambdafus3 transducing phage DNA as templates. J Biol Chem (1977) 2.42

The nucleotide sequence of the Escherichia coli fus gene, coding for elongation factor G. Nucleic Acids Res (1984) 2.27

Expression of ribosomal genes in bacteria. Adv Genet (1982) 2.26

Intermediates and time kinetics of the in vivo assembly of Escherichia coli ribosomes. J Mol Biol (1975) 2.26

Inhibition of constitutively active Stat3 suppresses growth of human ovarian and breast cancer cells. Oncogene (2001) 2.25

Cloning and characterization of a novel human class I histone deacetylase that functions as a transcription repressor. J Biol Chem (2000) 2.19

Operon-specific regulation of ribosomal protein synthesis in Escherichia coli. Proc Natl Acad Sci U S A (1979) 2.19

Enhanced chemosensitivity to CPT-11 with proteasome inhibitor PS-341: implications for systemic nuclear factor-kappaB inhibition. Cancer Res (2001) 2.18

Cytoreductive surgery and hyperthermic intraperitoneal chemotherapy in the management of peritoneal surface malignancies of colonic origin: a consensus statement. Society of Surgical Oncology. Ann Surg Oncol (2006) 2.13

Specialized transducing phages for ribosomal protein genes of Escherichia coli. Proc Natl Acad Sci U S A (1975) 2.06

Effects of cis arrangement of chromatin insulators on enhancer-blocking activity. Science (2001) 2.03

Elevated serum and synovial fluid TNF-like ligand 1A (TL1A) is associated with autoantibody production in patients with rheumatoid arthritis. Scand J Rheumatol (2013) 2.02

Increased oxidative stress is associated with chronic intermittent hypoxia-mediated brain cortical neuronal cell apoptosis in a mouse model of sleep apnea. Neuroscience (2004) 2.02

Transcription of the S10 ribosomal protein operon is regulated by an attenuator in the leader. Cell (1983) 1.99

Crosstalk between the connecting tubule and the afferent arteriole regulates renal microcirculation. Kidney Int (2007) 1.98

beta-Amyloid efflux mediated by p-glycoprotein. J Neurochem (2001) 1.92

Some rRNA operons in E. coli have tRNA genes at their distal ends. Cell (1978) 1.91

A new rRNA processing mutant of Saccharomyces cerevisiae. Nucleic Acids Res (1992) 1.88

Global analysis of ATM polymorphism reveals significant functional constraint. Am J Hum Genet (2001) 1.80

Insulin regulates transcription of the CCAAT/enhancer binding protein (C/EBP) alpha, beta, and delta genes in fully-differentiated 3T3-L1 adipocytes. J Biol Chem (1995) 1.77

Fluoride and casein phosphopeptide-amorphous calcium phosphate. J Dent Res (2008) 1.76

Reduced HIV-1 infectability of CD4+ lymphocytes from exposed-uninfected individuals: association with low expression of CCR5 and high production of beta-chemokines. Virology (1998) 1.76

A novel protein shared by RNase MRP and RNase P. RNA (1997) 1.74

Repeated embolism and multiple aneurysms: central nervous system manifestations of cardiac myxoma. Eur J Neurol (2008) 1.72

Retention in plaque and remineralization of enamel lesions by various forms of calcium in a mouthrinse or sugar-free chewing gum. J Dent Res (2003) 1.69

Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations. Proc Natl Acad Sci U S A (1999) 1.68

Enhancement of radiosensitivity by proteasome inhibition: implications for a role of NF-kappaB. Int J Radiat Oncol Biol Phys (2001) 1.67

Plasma nitric oxide levels in newborn infants with sepsis. J Pediatr (1993) 1.66

Constructing high complexity synthetic libraries of long ORFs using in vitro selection. J Mol Biol (2000) 1.65

Quantitation of hepatic glucose fluxes and pathways of hepatic glycogen synthesis in conscious mice. Am J Physiol (1995) 1.64

Role of ribosomal protein S12 in peptide chain elongation: analysis of pleiotropic, streptomycin-resistant mutants of Escherichia coli. J Bacteriol (1977) 1.63

Muscle development in Caenorhabditis elegans: mutants exhibiting retarded sarcomere construction. Cell (1978) 1.61

A PCR assay for identification of Enterococcus faecium. J Clin Microbiol (1997) 1.61

Synthesis of ribosomal RNA in E. coli: analysis using deletion mutants of a lambda transducing phage carrying ribosomal RNA genes. Cell (1976) 1.60

Accuracy and clinical relevance of computed tomography scan interpretation of peritoneal cancer index in colorectal cancer peritoneal carcinomatosis: a multi-institutional study. J Surg Oncol (2010) 1.59

The three-dimensional structure of 4-hydroxybenzoyl-CoA thioesterase from Pseudomonas sp. Strain CBS-3. J Biol Chem (1998) 1.58

Nucleotide sequence of the alpha ribosomal protein operon of Escherichia coli. Nucleic Acids Res (1985) 1.58

Possible mechanism of efferent arteriole (Ef-Art) tubuloglomerular feedback. Kidney Int (2007) 1.55

Origins and divergence of the Roma (gypsies). Am J Hum Genet (2001) 1.53

Identification of a Drosophila brain-gut peptide related to the neuropeptide Y family. Peptides (1999) 1.52

Impaired mobilization of hematopoietic stem/progenitor cells in C5-deficient mice supports the pivotal involvement of innate immunity in this process and reveals novel promobilization effects of granulocytes. Leukemia (2009) 1.50

Role of the glucosamine pathway in fat-induced insulin resistance. J Clin Invest (1997) 1.49

Autogenous control of the S10 ribosomal protein operon of Escherichia coli: genetic dissection of transcriptional and posttranscriptional regulation. Proc Natl Acad Sci U S A (1987) 1.48

Decreased plasma cytokines are associated with low platelet counts in aplastic anemia and immune thrombocytopenic purpura. J Thromb Haemost (2012) 1.47

Does bilirubin change the free concentration of propofol? Acta Anaesthesiol Scand (2010) 1.47

Isolation of polar insertion mutants and the direction of transcription of ribosomal protein genes in E. coli. Nature (1975) 1.46

Evidence for reduced breakdown of messenger RNA during blocked transcription or translation in Escherichia coli. J Mol Biol (1969) 1.45

Remineralization of enamel subsurface lesions in situ by sugar-free lozenges containing casein phosphopeptide-amorphous calcium phosphate. Aust Dent J (2003) 1.44

Molecular signature of adult bone marrow-purified very small embryonic-like stem cells supports their developmental epiblast/germ line origin. Leukemia (2010) 1.43

Genetic dissection of stringent control and nutritional shift-up response of the Escherichia coli S10 ribosomal protein operon. J Mol Biol (1985) 1.39

Acid resistance of enamel subsurface lesions remineralized by a sugar-free chewing gum containing casein phosphopeptide-amorphous calcium phosphate. Caries Res (2004) 1.38

Condylar fractures of the mandible. I. Classification and relation to age, occlusion, and concomitant injuries of teeth and teeth-supporting structures, and fractures of the mandibular body. Int J Oral Surg (1977) 1.38

DNA-dependent in vitro synthesis of fibosomal proteins, protein elongation factors, and RNA polymerase subunit alpha: inhibition by ppGpp. Cell (1976) 1.37

Double-stranded RNA injection produces null phenotypes in zebrafish. Dev Biol (2000) 1.36

Antagonists of phosphatidylinositol 3-kinase block activation of several novel protein kinases in neutrophils. J Biol Chem (1995) 1.34

Inducible chemoresistance to 7-ethyl-10-[4-(1-piperidino)-1-piperidino]-carbonyloxycamptothe cin (CPT-11) in colorectal cancer cells and a xenograft model is overcome by inhibition of nuclear factor-kappaB activation. Cancer Res (2000) 1.32

Modulation of retinoic acid sensitivity in lung cancer cells through dynamic balance of orphan receptors nur77 and COUP-TF and their heterodimerization. EMBO J (1997) 1.32

Early postnatal development of rat brain: in vivo diffusion tensor imaging. J Neurosci Res (2008) 1.31

Molecular determinants of AHPN (CD437)-induced growth arrest and apoptosis in human lung cancer cell lines. Mol Cell Biol (1998) 1.30

Gene amplification of the Menkes (MNK; ATP7A) P-type ATPase gene of CHO cells is associated with copper resistance and enhanced copper efflux. Hum Mol Genet (1995) 1.29

Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Mol Biol (2010) 1.28

Pharmacophore/receptor models for GABA(A)/BzR subtypes (alpha1beta3gamma2, alpha5beta3gamma2, and alpha6beta3gamma2) via a comprehensive ligand-mapping approach. J Med Chem (2000) 1.28

Antiproliferative effects of the somatostatin analogue octreotide (SMS 201-995) on ZR-75-1 human breast cancer cells in vivo and in vitro. Cancer Res (1992) 1.25

Global sequence diversity of BRCA2: analysis of 71 breast cancer families and 95 control individuals of worldwide populations. Hum Mol Genet (1999) 1.24

Ciliary neurotrophic factor improves diabetic parameters and hepatic steatosis and increases basal metabolic rate in db/db mice. Proc Natl Acad Sci U S A (2003) 1.24