Published in Genomics on December 15, 1999
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements. PLoS Biol (2004) 7.95
Hierarchical scaffolding with Bambus. Genome Res (2004) 4.95
The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res (2002) 4.58
The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes. J Bacteriol (2007) 3.55
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res (2005) 3.22
Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens. Genome Res (2006) 2.84
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol (2009) 2.75
Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage. J Bacteriol (2003) 2.51
Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PLoS Biol (2004) 2.36
Genome of the opportunistic pathogen Streptococcus sanguinis. J Bacteriol (2007) 2.21
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment. Proc Natl Acad Sci U S A (2006) 2.13
DNA sequence of a ColV plasmid and prevalence of selected plasmid-encoded virulence genes among avian Escherichia coli strains. J Bacteriol (2006) 2.11
Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc Natl Acad Sci U S A (2007) 2.06
Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7. PLoS One (2010) 2.03
Genetic basis of virulence attenuation revealed by comparative genomic analysis of Mycobacterium tuberculosis strain H37Ra versus H37Rv. PLoS One (2008) 2.01
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. J Bacteriol (2006) 1.89
Complete DNA sequence of a ColBM plasmid from avian pathogenic Escherichia coli suggests that it evolved from closely related ColV virulence plasmids. J Bacteriol (2006) 1.79
Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism. PLoS One (2009) 1.56
Genome sequence of the versatile fish pathogen Edwardsiella tarda provides insights into its adaptation to broad host ranges and intracellular niches. PLoS One (2009) 1.44
Projector: automatic contig mapping for gap closure purposes. Nucleic Acids Res (2003) 1.38
Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C. J Bacteriol (2003) 1.32
Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. BMC Genomics (2010) 1.31
Evidence that human Chlamydia pneumoniae was zoonotically acquired. J Bacteriol (2009) 1.30
Bacterial biosynthesis and maturation of the didemnin anti-cancer agents. J Am Chem Soc (2012) 1.29
MuPlex: multi-objective multiplex PCR assay design. Nucleic Acids Res (2005) 1.28
The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments. Appl Environ Microbiol (2009) 1.26
Next generation sequencing technologies for insect virus discovery. Viruses (2011) 1.18
Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps. Genome Biol (2008) 1.17
The complete genome sequence of Mycoplasma bovis strain Hubei-1. PLoS One (2011) 1.15
Sequence analysis of the genome of the Neodiprion sertifer nucleopolyhedrovirus. J Virol (2004) 1.14
Sequence analysis and characterization of a transferable hybrid plasmid encoding multidrug resistance and enabling zoonotic potential for extraintestinal Escherichia coli. Infect Immun (2010) 1.12
Involvement of potD in Streptococcus pneumoniae polyamine transport and pathogenesis. Infect Immun (2006) 1.09
Statistical thermodynamics and kinetics of DNA multiplex hybridization reactions. Biophys J (2006) 1.06
Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli. J Bacteriol (2011) 0.99
Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus. BMC Microbiol (2007) 0.97
MGView: an alignment and visualization tool to enhance gap closure of microbial genomes. Nucleic Acids Res (2003) 0.96
The purine-utilizing bacterium Clostridium acidurici 9a: a genome-guided metabolic reconsideration. PLoS One (2012) 0.95
A novel universal primer-multiplex-PCR method with sequencing gel electrophoresis analysis. PLoS One (2012) 0.94
A freshwater cyanophage whose genome indicates close relationships to photosynthetic marine cyanomyophages. Environ Microbiol (2011) 0.89
Sequencing intractable DNA to close microbial genomes. PLoS One (2012) 0.89
Complete genome sequence of Haloarcula hispanica, a Model Haloarchaeon for studying genetics, metabolism, and virus-host interaction. J Bacteriol (2011) 0.89
Complete Genome Sequence of Marinobacter sp. BSs20148. Genome Announc (2013) 0.88
The genome characteristics and predicted function of methyl-group oxidation pathway in the obligate aceticlastic methanogens, Methanosaeta spp. PLoS One (2012) 0.88
Complete genome and transcriptomes of Streptococcus parasanguinis FW213: phylogenic relations and potential virulence mechanisms. PLoS One (2012) 0.88
Complete Genome Sequence of Riemerella anatipestifer Serotype 1 Strain CH3. Genome Announc (2015) 0.86
A genome-guided analysis of energy conservation in the thermophilic, cytochrome-free acetogenic bacterium Thermoanaerobacter kivui. BMC Genomics (2014) 0.84
BAIT: Organizing genomes and mapping rearrangements in single cells. Genome Med (2013) 0.84
Genome sequence of Sphingomonas wittichii DP58, the first reported phenazine-1-carboxylic acid-degrading strain. J Bacteriol (2012) 0.84
Computational tradeoffs in multiplex PCR assay design for SNP genotyping. BMC Genomics (2005) 0.83
Complete genome sequence of the Radiation-Resistant bacterium Rubrobacter radiotolerans RSPS-4. Stand Genomic Sci (2014) 0.82
Complete nucleotide sequence and comparative analysis of pPR9, a 41.7-kilobase conjugative staphylococcal multiresistance plasmid conferring high-level mupirocin resistance. Antimicrob Agents Chemother (2010) 0.81
Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae). Genome Announc (2015) 0.80
Characterization and differential gene expression between two phenotypic phase variants in Salmonella enterica serovar Typhimurium. PLoS One (2012) 0.80
The complete sequence of the mitochondrial genome of Butomus umbellatus--a member of an early branching lineage of monocotyledons. PLoS One (2013) 0.79
Complete Genome Sequence of an Oral Commensal, Streptococcus oligofermentans Strain AS 1.3089. Genome Announc (2013) 0.78
Complete Genome Sequence of Veillonella atypica OK5, the First Transformable Strain in the Species. Genome Announc (2017) 0.76
Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265. Genome Announc (2014) 0.76
Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178T (Phylum Thermodesulfobacteria). Genome Announc (2015) 0.75
Complete genome sequence of Thalassolituus oleivorans R6-15, an obligate hydrocarbonoclastic marine bacterium from the Arctic Ocean. Stand Genomic Sci (2014) 0.75
Changes in pathogenicity and immunogenicity of Mycoplasma mycoides subsp. mycoides strains revealed by comparative genomics analysis. Sci Rep (2016) 0.75
Complete genome sequence of Paracoccus marcusii phage vB_PmaS-R3 isolated from the South China Sea. Stand Genomic Sci (2015) 0.75
A novel universal multiplex PCR improves detection of AZFc Y-chromosome microdeletions. J Assist Reprod Genet (2014) 0.75
Approaches for in silico finishing of microbial genome sequences. Genet Mol Biol (2017) 0.75
Initial sequencing and analysis of the human genome. Nature (2001) 212.86
Improved microbial gene identification with GLIMMER. Nucleic Acids Res (1999) 51.34
The transcriptional landscape of the mammalian genome. Science (2005) 37.63
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science (2001) 21.99
Microbial gene identification using interpolated Markov models. Nucleic Acids Res (1998) 20.26
Alignment of whole genomes. Nucleic Acids Res (1999) 20.02
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature (2000) 19.93
Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science (2000) 16.04
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature (1999) 14.42
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains. J Bacteriol (2002) 8.88
Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science (2003) 8.79
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Res (2000) 8.69
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ Microbiol (2002) 8.11
Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Nature (1999) 8.04
Gene index analysis of the human genome estimates approximately 120,000 genes. Nat Genet (2000) 6.09
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics (2004) 5.85
Complete genome sequence of Caulobacter crescentus. Proc Natl Acad Sci U S A (2001) 5.58
A probabilistic method for identifying start codons in bacterial genomes. Bioinformatics (2001) 5.40
Evidence for symmetric chromosomal inversions around the replication origin in bacteria. Genome Biol (2000) 5.40
Prediction of transcription terminators in bacterial genomes. J Mol Biol (2000) 5.28
An optimized protocol for analysis of EST sequences. Nucleic Acids Res (2000) 4.80
Prediction of operons in microbial genomes. Nucleic Acids Res (2001) 4.44
Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae. Nucleic Acids Res (2003) 4.33
GeneSplicer: a new computational method for splice site prediction. Nucleic Acids Res (2001) 3.71
Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science (2003) 3.68
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence. Genome Res (2001) 2.92
A clustering method for repeat analysis in DNA sequences. Genome Biol (2001) 2.59
The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea. Proc Natl Acad Sci U S A (2005) 2.43
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Nature (2000) 2.17
DNA uptake signal sequences in naturally transformable bacteria. Res Microbiol (2000) 2.08
Microbial genome sequencing. Nature (2000) 1.95
The self-fulfilling prophecy in close relationships: rejection sensitivity and rejection by romantic partners. J Pers Soc Psychol (1998) 1.88
Long lag times and high velocities in the motility of natural assemblages of marine bacteria. Appl Environ Microbiol (1995) 1.86
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature (2000) 1.85
Sequence and analysis of the Arabidopsis genome. Curr Opin Plant Biol (2001) 1.47
Modeling splice sites with Bayes networks. Bioinformatics (2000) 1.28
Rice bioinformatics. analysis of rice sequence data and leveraging the data to other plant species. Plant Physiol (2001) 1.20
Efficient implementation of a generalized pair hidden Markov model for comparative gene finding. Bioinformatics (2005) 1.13
Purification and Properties of Flavonol-Ring B Glucosyltransferase from Chrysosplenium americanum. Plant Physiol (1983) 1.08
Finding genes in Plasmodium falciparum. Nature (2000) 0.98
Analysis of Carica papaya Telomeres and Telomere-Associated Proteins: Insights into the Evolution of Telomere Maintenance in Brassicales. Trop Plant Biol (2008) 0.88
Lateral gene transfer or viral colonization? Science (2001) 0.84
Application of PCR for detection and identification of mycoplasma contamination in virus stocks. In Vitro Cell Dev Biol Anim (1995) 0.82
Genome sequences of Mycoplasma alligatoris A21JP2T and Mycoplasma crocodyli MP145T. J Bacteriol (2011) 0.80
Molecular basis of the inhibition of gentamicin nephrotoxicity by daptomycin; an infrared spectroscopic investigation. Biochim Biophys Acta (1995) 0.79
Kinetic mechanism of a flavonol-ring-B O-glucosyltransferase from Chrysosplenium americanum. Eur J Biochem (1984) 0.79
Protein secondary structure modelling with probabilistic networks. Proc Int Conf Intell Syst Mol Biol (1993) 0.76
Protein seer: a Web server for protein homology detection. Conf Proc IEEE Eng Med Biol Soc (2004) 0.75