Published in J Bacteriol on February 01, 2000
Ribose utilization by the human commensal Bifidobacterium breve UCC2003. Microb Biotechnol (2009) 1.09
Use of deoxyribose by intestinal and extraintestinal pathogenic Escherichia coli strains: a metabolic adaptation involved in competitiveness. Infect Immun (2004) 0.94
Regulation of expression of the 2-deoxy-D-ribose utilization regulon, deoQKPX, from Salmonella enterica serovar typhimurium. J Bacteriol (2003) 0.91
Role of deoxyribose catabolism in colonization of the murine intestine by pathogenic Escherichia coli strains. Infect Immun (2009) 0.91
Deciphering the function of an ORF: Salmonella enterica DeoM protein is a new mutarotase specific for deoxyribose. Protein Sci (2004) 0.80
Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (1970) 1528.65
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem (1976) 903.81
DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A (1977) 790.54
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47
Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A (1991) 119.63
Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol (1990) 61.47
Construction and properties of a family of pACYC184-derived cloning vectors compatible with pBR322 and its derivatives. Gene (1991) 6.10
McrA and McrB restriction phenotypes of some E. coli strains and implications for gene cloning. Nucleic Acids Res (1988) 5.76
Structure of Escherichia coli ribokinase in complex with ribose and dinucleotide determined to 1.8 A resolution: insights into a new family of kinase structures. Structure (1998) 1.69
Isolation and characterization of catalytic and calmodulin-binding domains of Bordetella pertussis adenylate cyclase. Eur J Biochem (1991) 1.63
Structure and function of the uhp genes for the sugar phosphate transport system in Escherichia coli and Salmonella typhimurium. J Bacteriol (1992) 1.57
Directed evolution of biosynthetic pathways. Recruitment of cysteine thioethers for constructing the cell wall of Escherichia coli. J Biol Chem (1993) 1.40
Genetic regulation of ribonucleoside and deoxyribonucleoside catabolism in Salmonella typhimurium. J Bacteriol (1970) 1.39
2-deoxyribose gene-enzyme complex in Salmonella typhimurium. I. Isolation and enzymatic characterization of 2-deoxyribose-negative mutants. J Bacteriol (1968) 1.26
Inability of low thymine-requiring mutants of Escherichia coli lacking phosphodeoxyribomutase to be induced for deoxythymidine phosphorylase and deoxyriboaldolase. J Bacteriol (1968) 1.11
Pentose fermentation by Lactobacillus plantarum. V. Fermentation of 2-deoxy-D-ribose. J Biol Chem (1958) 0.93
Purification, characterization, and crystallization of Escherichia coli ribokinase. Protein Sci (1997) 0.82
A deoxyribokinase from Lactobacillus plantarum. J Biol Chem (1959) 0.81
Deoxyribokinase from Salmonella typhimurium. Purification and properties. Arch Biochem Biophys (1974) 0.81
Pyrimidine metabolism in microorganisms. Bacteriol Rev (1970) 7.44
Matching relational patterns in nucleic acid sequences. Comput Appl Biosci (1987) 4.87
Synthesis and metabolism of uracil-containing deoxyribonucleic acid in Escherichia coli. J Bacteriol (1981) 4.66
Metabolism of pyrimidines and pyrimidine nucleosides by Salmonella typhimurium. J Bacteriol (1972) 2.92
Unipolar localization and ATPase activity of IcsA, a Shigella flexneri protein involved in intracellular movement. J Bacteriol (1993) 2.62
Altered deoxyribonucleotide pools in P2 eductants of Escherichia coli K-12 due to deletion of the dcd gene. J Bacteriol (1976) 2.57
Pyrimidine nucleotide metabolism and pathways of thymidine triphosphate biosynthesis in Salmonella typhimurium. J Bacteriol (1968) 2.52
Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps. EMBO J (2001) 2.44
Enlarging the amino acid set of Escherichia coli by infiltration of the valine coding pathway. Science (2001) 2.35
Genetic characterization of polypeptide deformylase, a distinctive enzyme of eubacterial translation. EMBO J (1994) 2.31
Control of expression of the pyr genes in Salmonella typhimurium: effects of variations in uridine and cytidine nucleotide pools. J Bacteriol (1975) 2.24
Turnover of the deoxyribonucleoside triphosphates in Escherichia coli 15 T during thymine starvation. Eur J Biochem (1971) 2.20
Mutants of Salmonella typhimurium requiring cytidine for growth. J Bacteriol (1968) 2.06
Studies on the acid-soluble nucleotide pool in thymine-requiring mutants of Escherichia coli during thymine starvation. II. Changes in the amounts of deoxycytidine triphosphate and deoxyadenosine triphosphate in Escherichia coli 15 T-A-U. Biochim Biophys Acta (1966) 2.02
Adaptive eradication of methionine and cysteine from cyanobacterial light-harvesting proteins. Nature (1989) 1.99
Ion-exchange thin-layer chromatography. 13. Resolution of complex nucleoside triphosphate mixtures. Anal Biochem (1965) 1.98
Mast cell-dependent B and T lymphocyte activation is mediated by the secretion of immunologically active exosomes. J Immunol (2001) 1.91
Deoxycytidine triphosphate deaminase: characterization of an Escherichia coli mutant deficient in the enzyme. J Bacteriol (1971) 1.88
Regulation of nucleoside triphosphate pools in Escherichia coli. J Mol Biol (1967) 1.85
Cold-sensitive mutants of Salmonella typhimurium defective in uridine monophosphate kinase (pyrH). J Biol Chem (1972) 1.71
Location on the chromosome of Salmonella typhimurium of genes governing pyrimidine metabolism. II. Uridine kinase, cytosine deaminase and thymidine kinase. Mol Gen Genet (1972) 1.70
Studies on the acid-soluble nucleotide pool in thymine-requiring mutants of Escherichia coli during thymine starvation. 3. On the regulation of the deoxyadenosine triphosphate and deoxycytidine triphosphate pools of Escherichia coli. Biochim Biophys Acta (1966) 1.68
Isolation and characterization of catalytic and calmodulin-binding domains of Bordetella pertussis adenylate cyclase. Eur J Biochem (1991) 1.63
Characterization of the Escherichia coli codBA operon encoding cytosine permease and cytosine deaminase. Mol Microbiol (1992) 1.62
Deoxycytidine triphosphate deaminase: identification and function in Salmonella typhimurium. J Bacteriol (1971) 1.55
Convergent evolution of amino acid usage in archaebacterial and eubacterial lineages adapted to high salt. Res Microbiol (1995) 1.55
Genetic evidence for a repressor of synthesis of cytosine deaminase and purine biosynthesis enzymes in Escherichia coli. J Bacteriol (1989) 1.52
Molecular evolution of protein atomic composition. Science (2001) 1.50
Metabolism of exogenous purine bases and nucleosides by Salmonella typhimurium. J Bacteriol (1971) 1.50
pyrR identical to pyrH in Salmonella typhimurium: control of expression of the pyr genes. J Bacteriol (1975) 1.49
Methionine biosynthesis in Enterobacteriaceae: biochemical, regulatory, and evolutionary aspects. CRC Crit Rev Biochem (1988) 1.48
Modulation of NifA activity by PII in Azospirillum brasilense: evidence for a regulatory role of the NifA N-terminal domain. J Bacteriol (1996) 1.43
Two thymidylate synthetases in Bacillus subtilis. Proc Natl Acad Sci U S A (1978) 1.42
dacD, an Escherichia coli gene encoding a novel penicillin-binding protein (PBP6b) with DD-carboxypeptidase activity. J Bacteriol (1996) 1.40
Directed evolution of biosynthetic pathways. Recruitment of cysteine thioethers for constructing the cell wall of Escherichia coli. J Biol Chem (1993) 1.40
Exploring the functional robustness of an enzyme by in vitro evolution. EMBO J (1996) 1.38
Potential secondary structure at translation-initiation sites. Nucleic Acids Res (1987) 1.36
Artificially ambiguous genetic code confers growth yield advantage. Proc Natl Acad Sci U S A (2004) 1.36
Bacteriophage phi W-14-infected Pseudomonas acidovorans synthesizes hydroxymethyldeoxyuridine triphosphate. J Virol (1980) 1.35
Pyrimidine, purine and nitrogen control of cytosine deaminase synthesis in Escherichia coli K 12. Involvement of the glnLG and purR genes in the regulation of codA expression. Arch Microbiol (1989) 1.35
Characterization of the calmodulin-binding and of the catalytic domains of Bordetella pertussis adenylate cyclase. J Biol Chem (1989) 1.33
Deoxycytidine triphosphate deaminase of Salmonella typhimurium. Purification and characterization. J Biol Chem (1975) 1.32
Interactions of the Escherichia coli methionine repressor with the metF operator and with its corepressor, S-adenosylmethionine. J Biol Chem (1986) 1.32
Deglycosylation of the 45/47-kilodalton antigen complex of Mycobacterium tuberculosis decreases its capacity to elicit in vivo or in vitro cellular immune responses. Infect Immun (1999) 1.32
The pyrimidine biosynthesis operon of the thermophile Bacillus caldolyticus includes genes for uracil phosphoribosyltransferase and uracil permease. J Bacteriol (1994) 1.31
Determination of phosphoenolpyruvate carboxykinase activity with deoxyguanosine 5'-diphosphate as nucleotide substrate. Anal Biochem (1979) 1.29
Identification of residues essential for catalysis and binding of calmodulin in Bordetella pertussis adenylate cyclase by site-directed mutagenesis. EMBO J (1989) 1.27
Properties of a human cytomegalovirus-induced protein kinase. Virology (1984) 1.27
Dual transcriptional initiation sites from the pyrC promoter control expression of the gene in Salmonella typhimurium. Mol Gen Genet (1991) 1.27
Identification of 12 new yeast mitochondrial ribosomal proteins including 6 that have no prokaryotic homologues. J Biol Chem (2001) 1.24
Functional analysis of the fixNOQP region of Azorhizobium caulinodans. J Bacteriol (1994) 1.24
Nucleotide pool-sensitive selection of the transcriptional start site in vivo at the Salmonella typhimurium pyrC and pyrD promoters. J Bacteriol (1993) 1.22
[Transfer of adenine-nucleotides through mitochondrial membranes during oxidative phosphorylation]. Bull Soc Chim Biol (Paris) (1970) 1.21
Structural gene and complete amino acid sequence of Vibrio alginolyticus collagenase. Biochem J (1992) 1.19
Decreased capacity of recombinant 45/47-kDa molecules (Apa) of Mycobacterium tuberculosis to stimulate T lymphocyte responses related to changes in their mannosylation pattern. J Biol Chem (1999) 1.19
Synthesis of thymine and alpha-putrescinylthymine in bacteriophage phi W-14-infected Pseudomonas acidovorans. J Virol (1980) 1.17
Escherichia coli UMP-kinase, a member of the aspartokinase family, is a hexamer regulated by guanine nucleotides and UTP. Biochemistry (1995) 1.17
Pyrimidine regulation of tandem promoters for carAB in Salmonella typhimurium. J Bacteriol (1989) 1.16
Utilization of orotate as a pyrimidine source by Salmonella typhimurium and Escherichia coli requires the dicarboxylate transport protein encoded by dctA. J Bacteriol (1996) 1.15
Salmonella typhimurium mutants defective in cytidine monophosphate kinase (cmk). J Bacteriol (1974) 1.15
Multienzymatic non ribosomal peptide biosynthesis: identification of the functional domains catalysing peptide elongation and epimerisation. C R Acad Sci III (1995) 1.14
The sulfhydryl groups of the thiol-dependent cytolytic toxin from Bacillus alvei evidence for one essential sulfhydryl group. Biochem Biophys Res Commun (1981) 1.11
Molecular characterization of pyrimidine biosynthesis genes from the thermophile Bacillus caldolyticus. Microbiology (1994) 1.10
Identification of a nifA-like regulatory gene of Azospirillum brasilense Sp7 expressed under conditions of nitrogen fixation and in the presence of air and ammonia. Mol Microbiol (1991) 1.09
Nucleotide sequence of the fixABC region of Azorhizobium caulinodans ORS571: similarity of the fixB product with eukaryotic flavoproteins, characterization of fixX, and identification of nifW. Mol Gen Genet (1991) 1.08
sbmC, a stationary-phase induced SOS Escherichia coli gene, whose product protects cells from the DNA replication inhibitor microcin B17. Mol Microbiol (1995) 1.08
Structural and catalytic characteristics of Escherichia coli adenylate kinase. J Biol Chem (1987) 1.08
Cloning, nucleotide sequence and regulation of the Salmonella typhimurium pyrD gene encoding dihydroorotate dehydrogenase. Eur J Biochem (1990) 1.07
Cloning and characterization of the pyrE gene and of PyrE::Mud1 (Ap lac) fusions from Salmonella typhimurium. Eur J Biochem (1985) 1.07
A yeast homolog of chromatin assembly factor 1 is involved in early ribosome assembly. Curr Biol (2001) 1.05
Studies on the acid-soluble nucleotide pool in Escherichia coli. IV. Effects of hydroxyurea. Biochim Biophys Acta (1967) 1.05
Ribosomal -1 frameshifting during decoding of Bacillus subtilis cdd occurs at the sequence CGA AAG. J Bacteriol (1999) 1.05
The cmk gene encoding cytidine monophosphate kinase is located in the rpsA operon and is required for normal replication rate in Escherichia coli. J Bacteriol (1995) 1.05
alpha-Clostripain. Chemical characterization, activity, and thiol content of the highly active form of clostripain. J Biol Chem (1979) 1.04
Improved spectrophotometric assay of nucleoside monophosphate kinase activity using the pyruvate kinase/lactate dehydrogenase coupling system. Anal Biochem (1994) 1.03
Zinc, a novel structural element found in the family of bacterial adenylate kinases. Biochemistry (1992) 1.03
Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure (1998) 1.03
Comparison of protein patterns of Listeria monocytogenes grown in biofilm or in planktonic mode by proteomic analysis. FEMS Microbiol Lett (2002) 1.01
Phenotypic suppression by incorporation of an alien amino acid. J Mol Biol (1993) 1.01
Acquired thermotolerance and heat shock proteins in thermophiles from the three phylogenetic domains. J Bacteriol (1994) 1.00
Cytidine deaminases from B. subtilis and E. coli: compensating effects of changing zinc coordination and quaternary structure. Biochemistry (1999) 1.00
Deoxycytidylate deaminase from Bacillus subtilis. Purification, characterization, and physiological function. J Biol Chem (1978) 0.99
Chromosomal location, cloning and nucleotide sequence of the Bacillus subtilis cdd gene encoding cytidine/deoxycytidine deaminase. Mol Gen Genet (1989) 0.99
Cloning and structural characterization of the Salmonella typhimurium pyrC gene encoding dihydroorotase. Eur J Biochem (1986) 0.98
Enzymatic incorporation in DNA of 1,5-anhydrohexitol nucleotides. Biochemistry (2000) 0.98
Thymidine-requiring mutants of Salmonella typhimurium that are defective in deoxyuridine 5'-phosphate synthesis. J Bacteriol (1977) 0.98
Simple and fast purification of Escherichia coli adenylate kinase. FEBS Lett (1983) 0.98
Regulation of pyrC expression in Salmonella typhimurium: identification of a regulatory region. Mol Gen Genet (1988) 0.98
Characterization of ATP and calmodulin-binding properties of a truncated form of Bacillus anthracis adenylate cyclase. Biochemistry (1990) 0.98
Recombinant human cytidine deaminase: expression, purification, and characterization. Protein Expr Purif (1996) 0.98