Published in J Bacteriol on August 01, 2000
How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol Mol Biol Rev (2006) 6.39
DNA microarray analysis of differential gene expression in Borrelia burgdorferi, the Lyme disease spirochete. Proc Natl Acad Sci U S A (2002) 3.82
Expression of Borrelia burgdorferi OspC and DbpA is controlled by a RpoN-RpoS regulatory pathway. Proc Natl Acad Sci U S A (2001) 3.65
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The response regulator Rrp2 is essential for the expression of major membrane lipoproteins in Borrelia burgdorferi. Proc Natl Acad Sci U S A (2003) 2.31
Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli. Microbiol Mol Biol Rev (2001) 2.29
Alternative sigma factors and their roles in bacterial virulence. Microbiol Mol Biol Rev (2005) 2.15
Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach. BMC Bioinformatics (2004) 2.14
Structural insights into the activity of enhancer-binding proteins. Science (2005) 2.04
Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev (2001) 1.84
Nitrogen recycling and nutritional provisioning by Blattabacterium, the cockroach endosymbiont. Proc Natl Acad Sci U S A (2009) 1.80
The transition from transcriptional initiation to elongation. Curr Opin Genet Dev (2008) 1.78
A negative feedback loop involving small RNAs accelerates Vibrio cholerae's transition out of quorum-sensing mode. Genes Dev (2008) 1.74
A dynamic and intricate regulatory network determines Pseudomonas aeruginosa virulence. Nucleic Acids Res (2012) 1.70
Essential role of the response regulator Rrp2 in the infectious cycle of Borrelia burgdorferi. Infect Immun (2008) 1.63
Nooks and crannies in type VI secretion regulation. J Bacteriol (2010) 1.60
Mechanism of transcription initiation at an activator-dependent promoter defined by single-molecule observation. Cell (2012) 1.57
Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400. Appl Environ Microbiol (2004) 1.56
Insights into the complex regulation of rpoS in Borrelia burgdorferi. Mol Microbiol (2007) 1.54
The role of bacterial enhancer binding proteins as specialized activators of σ54-dependent transcription. Microbiol Mol Biol Rev (2012) 1.53
A novel signaling network essential for regulating Pseudomonas aeruginosa biofilm development. PLoS Pathog (2009) 1.49
Identification of Listeria monocytogenes genes expressed in response to growth at low temperature. Appl Environ Microbiol (2002) 1.48
Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. J Bacteriol (2006) 1.46
The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: identifying a surface that binds sigma 54. Proc Natl Acad Sci U S A (2003) 1.45
Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae. J Bacteriol (2011) 1.41
Organization of an activator-bound RNA polymerase holoenzyme. Mol Cell (2008) 1.39
Prediction and overview of the RpoN-regulon in closely related species of the Rhizobiales. Genome Biol (2002) 1.35
Evidence that RpoS (sigmaS) in Borrelia burgdorferi is controlled directly by RpoN (sigma54/sigmaN). J Bacteriol (2006) 1.34
An intricate network of regulators controls biofilm formation and colonization by Vibrio fischeri. Mol Microbiol (2009) 1.34
Multipartite regulation of rctB, the replication initiator gene of Vibrio cholerae chromosome II. J Bacteriol (2005) 1.33
Sigma54 enhancer binding proteins and Myxococcus xanthus fruiting body development. J Bacteriol (2004) 1.33
The NifL-NifA System: a multidomain transcriptional regulatory complex that integrates environmental signals. J Bacteriol (2004) 1.31
DNA supercoiling allows enhancer action over a large distance. Proc Natl Acad Sci U S A (2001) 1.24
Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins. J Bacteriol (2011) 1.21
Characterization of the RpoN regulon reveals differential regulation of T6SS and new flagellar operons in Vibrio cholerae O37 strain V52. Nucleic Acids Res (2012) 1.20
Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4. Nucleic Acids Res (2003) 1.18
Genetic evidence that Legionella pneumophila RpoS modulates expression of the transmission phenotype in both the exponential phase and the stationary phase. Infect Immun (2004) 1.17
Bacterial stress responses: what doesn't kill them can make then stronger. PLoS Biol (2006) 1.16
Identification and inactivation of three group 2 sigma factor genes in Anabaena sp. strain PCC 7120. J Bacteriol (2001) 1.15
Adaptation and response of Bifidobacterium animalis subsp. lactis to bile: a proteomic and physiological approach. Appl Environ Microbiol (2007) 1.13
Enhancer-binding proteins with a forkhead-associated domain and the sigma54 regulon in Myxococcus xanthus fruiting body development. Proc Natl Acad Sci U S A (2005) 1.13
Environmental regulation operating at the promoter clearance step of bacterial transcription. Genes Dev (2007) 1.08
Cross-regulation between a novel two-component signal transduction system for catabolism of toluene in Pseudomonas mendocina and the TodST system from Pseudomonas putida. J Bacteriol (2002) 1.08
Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior. BMC Genomics (2011) 1.07
Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis. Nucleic Acids Res (2009) 1.07
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Building enhancers from the ground up: a synthetic biology approach. Cell (2011) 1.06
Rationally designed insulator-like elements can block enhancer action in vitro. EMBO J (2003) 1.06
Regulation of sigL expression by the catabolite control protein CcpA involves a roadblock mechanism in Bacillus subtilis: potential connection between carbon and nitrogen metabolism. J Bacteriol (2005) 1.04
Molecular cloning and characterization of Escherichia coli K12 ygjG gene. BMC Microbiol (2003) 1.03
Escherichia coli dihydroxyacetone kinase controls gene expression by binding to transcription factor DhaR. EMBO J (2004) 1.02
Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective. Microbiol Mol Biol Rev (2013) 1.02
Role of Escherichia coli nitrogen regulatory genes in the nitrogen response of the Azotobacter vinelandii NifL-NifA complex. J Bacteriol (2001) 1.02
Control of expression of divergent Pseudomonas putida put promoters for proline catabolism. Appl Environ Microbiol (2000) 1.02
Genome shrinkage and loss of nutrient-providing potential in the obligate symbiont of the primitive termite Mastotermes darwiniensis. Appl Environ Microbiol (2011) 1.01
Chromatin structure can strongly facilitate enhancer action over a distance. Proc Natl Acad Sci U S A (2006) 1.00
Tuning the dials of Synthetic Biology. Microbiology (2013) 1.00
The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins. Nucleic Acids Res (2009) 1.00
Cyanobacterial-type, heteropentameric, NAD+-reducing NiFe hydrogenase in the purple sulfur photosynthetic bacterium Thiocapsa roseopersicina. Appl Environ Microbiol (2004) 0.99
Reorganisation of an RNA polymerase-promoter DNA complex for DNA melting. EMBO J (2004) 0.98
Distinguishing features of delta-proteobacterial genomes. Proc Natl Acad Sci U S A (2006) 0.98
Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process. J Bacteriol (2001) 0.97
Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum. J Bacteriol (2006) 0.97
Action of prokaryotic enhancer over a distance does not require continued presence of promoter-bound sigma54 subunit. Nucleic Acids Res (2002) 0.97
Phenylphosphate synthase: a new phosphotransferase catalyzing the first step in anaerobic phenol metabolism in Thauera aromatica. J Bacteriol (2004) 0.97
Regulated communication between the upstream face of RNA polymerase and the beta' subunit jaw domain. EMBO J (2004) 0.96
Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species. Nucleic Acids Res (2009) 0.96
Sigma L is important for cold shock adaptation of Bacillus subtilis. J Bacteriol (2006) 0.94
What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira. PLoS Negl Trop Dis (2016) 0.94
Probability of the site juxtaposition determines the rate of protein-mediated DNA looping. Biophys J (2007) 0.94
Model of transcriptional activation by MarA in Escherichia coli. PLoS Comput Biol (2009) 0.93
TRANSCRIPTION. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies. Science (2015) 0.93
A vitamin B12-based system for conditional expression reveals dksA to be an essential gene in Myxococcus xanthus. J Bacteriol (2009) 0.91
Eukaryotic-like signaling and gene regulation in a prokaryote that undergoes multicellular development. Proc Natl Acad Sci U S A (2005) 0.91
Molecular signaling mechanisms of the periopathogen, Treponema denticola. J Dent Res (2011) 0.90
Two chemosensory operons of Rhodobacter sphaeroides are regulated independently by sigma 28 and sigma 54. J Bacteriol (2006) 0.90
Characterization of the alternative sigma factor sigma54 and the transcriptional regulator FleQ of Legionella pneumophila, which are both involved in the regulation cascade of flagellar gene expression. J Bacteriol (2004) 0.90
Whole-genome mapping of 5' RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis. RNA (2015) 0.89
Regulation of expression of the fibronectin-binding protein BBK32 in Borrelia burgdorferi. J Bacteriol (2007) 0.89
Structure and regulation of the gab gene cluster, involved in the gamma-aminobutyric acid shunt, are controlled by a sigma54 factor in Bacillus thuringiensis. J Bacteriol (2010) 0.89
Domain movements of the enhancer-dependent sigma factor drive DNA delivery into the RNA polymerase active site: insights from single molecule studies. Nucleic Acids Res (2014) 0.89
Ralstonia eutropha H16 flagellation changes according to nutrient supply and state of poly(3-hydroxybutyrate) accumulation. Appl Environ Microbiol (2008) 0.88
Purification and characterization of the AAA+ domain of Sinorhizobium meliloti DctD, a sigma54-dependent transcriptional activator. J Bacteriol (2004) 0.88
Manganese and zinc regulate virulence determinants in Borrelia burgdorferi. Infect Immun (2013) 0.88
Amino Acid Uptake and Metabolism of Legionella pneumophila Hosted by Acanthamoeba castellanii. J Biol Chem (2014) 0.88
IHF-binding sites inhibit DNA loop formation and transcription initiation. Nucleic Acids Res (2009) 0.87
Monitoring intracellular levels of XylR in Pseudomonas putida with a single-chain antibody specific for aromatic-responsive enhancer-binding proteins. J Bacteriol (2001) 0.87
Rrp2, a prokaryotic enhancer-like binding protein, is essential for viability of Borrelia burgdorferi. J Bacteriol (2012) 0.87
Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1. J Bacteriol (2007) 0.87
Secondary structure and DNA binding by the C-terminal domain of the transcriptional activator NifA from Klebsiella pneumoniae. Nucleic Acids Res (2002) 0.87
The syp enhancer sequence plays a key role in transcriptional activation by the σ54-dependent response regulator SypG and in biofilm formation and host colonization by Vibrio fischeri. J Bacteriol (2013) 0.86
Transcriptional hierarchy of Aeromonas hydrophila polar-flagellum genes. J Bacteriol (2011) 0.86
Correlating protein footprinting with mutational analysis in the bacterial transcription factor sigma54 (sigmaN). Nucleic Acids Res (2002) 0.86
The anaerobe-specific orange protein complex of Desulfovibrio vulgaris hildenborough is encoded by two divergent operons coregulated by σ54 and a cognate transcriptional regulator. J Bacteriol (2011) 0.85
Structure, function, and tethering of DNA-binding domains in σ(54) transcriptional activators. Biopolymers (2013) 0.84
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Mutational analysis of the Myxococcus xanthus Omega4406 promoter region reveals an upstream negative regulatory element that mediates C-signal dependence. J Bacteriol (2006) 0.84
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