Published in Nucleic Acids Res on June 01, 2003
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A (2003) 3.55
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Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A (2003) 3.55
An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad Sci U S A (2011) 2.84
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Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability. PLoS Comput Biol (2006) 2.30
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Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biol (2008) 2.06
Molecular insights into human daily behavior. Proc Natl Acad Sci U S A (2008) 2.03
Evidence for a major role of antisense RNAs in cyanobacterial gene regulation. Mol Syst Biol (2009) 2.02
An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc Natl Acad Sci U S A (2006) 1.95
Coupling governs entrainment range of circadian clocks. Mol Syst Biol (2010) 1.85
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Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol (2005) 1.82
Comparison of human protein-protein interaction maps. Bioinformatics (2007) 1.79
The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus. PLoS Genet (2008) 1.74
Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Comput Biol (2007) 1.71
Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120. Proc Natl Acad Sci U S A (2011) 1.67
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Beta-TrCP1-mediated degradation of PERIOD2 is essential for circadian dynamics. J Biol Rhythms (2007) 1.64
Computational prediction of sRNAs and their targets in bacteria. RNA Biol (2010) 1.49
How robust are switches in intracellular signaling cascades? J Theor Biol (2003) 1.47
Functioning and robustness of a bacterial circadian clock. Mol Syst Biol (2007) 1.46
Modeling feedback loops of the Mammalian circadian oscillator. Biophys J (2004) 1.45
Comparison of biomechanical modeling of register transitions and voice instabilities with excised larynx experiments. J Acoust Soc Am (2007) 1.43
Recurrent design patterns in the feedback regulation of the mammalian signalling network. Mol Syst Biol (2008) 1.41
Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula. Proc Natl Acad Sci U S A (2011) 1.40
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. BMC Plant Biol (2007) 1.38
Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations. Philos Trans A Math Phys Eng Sci (2006) 1.36
The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms. BMC Genomics (2012) 1.32
Comparative genomics boosts target prediction for bacterial small RNAs. Proc Natl Acad Sci U S A (2013) 1.29
Inferring combinatorial regulation of transcription in silico. Nucleic Acids Res (2005) 1.26
Biocomputational prediction of non-coding RNAs in model cyanobacteria. BMC Genomics (2009) 1.25
Small RNAs establish delays and temporal thresholds in gene expression. Biophys J (2008) 1.24
Bifurcation analysis of the regulatory modules of the mammalian G1/S transition. Bioinformatics (2004) 1.22
Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. Bioinformatics (2008) 1.20
Tuning the mammalian circadian clock: robust synergy of two loops. PLoS Comput Biol (2011) 1.18
Nonlinear analysis of irregular animal vocalizations. J Acoust Soc Am (2002) 1.17
Microevolution in cyanobacteria: re-sequencing a motile substrain of Synechocystis sp. PCC 6803. DNA Res (2012) 1.14
Quantification of circadian rhythms in single cells. PLoS Comput Biol (2009) 1.14
Fluorescence staining of live cyanobacterial cells suggest non-stringent chromosome segregation and absence of a connection between cytoplasmic and thylakoid membranes. BMC Cell Biol (2007) 1.13
Competing docking interactions can bring about bistability in the MAPK cascade. Biophys J (2007) 1.13
Measuring similarities between transcription factor binding sites. BMC Bioinformatics (2005) 1.13
CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein. PLoS One (2013) 1.13
Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells. PLoS Genet (2010) 1.12
Genetic manipulation of Prochlorococcus strain MIT9313: green fluorescent protein expression from an RSF1010 plasmid and Tn5 transposition. Appl Environ Microbiol (2006) 1.12
Global parameter search reveals design principles of the mammalian circadian clock. BMC Syst Biol (2008) 1.08
A sequestration feedback determines dynamics and temperature entrainment of the KaiABC circadian clock. Mol Syst Biol (2010) 1.08
Quantitative analysis of ultrasensitive responses. FEBS J (2005) 1.08
A novel type of lycopene epsilon-cyclase in the marine cyanobacterium Prochlorococcus marinus MED4. Arch Microbiol (2003) 1.07
Adaptation and modification of three CRISPR loci in two closely related cyanobacteria. RNA Biol (2013) 1.06
The antisense RNA As1_flv4 in the Cyanobacterium Synechocystis sp. PCC 6803 prevents premature expression of the flv4-2 operon upon shift in inorganic carbon supply. J Biol Chem (2012) 1.06
Chloroplast development affects expression of phage-type RNA polymerases in barley leaves. Plant J (2004) 1.06
Identification of distinct antibody epitopes and mimotopes from a peptide array of 5520 randomly generated sequences. J Immunol Methods (2002) 1.05
The infinitely many genes model for the distributed genome of bacteria. Genome Biol Evol (2012) 1.05
A green light-absorbing phycoerythrin is present in the high-light-adapted marine cyanobacterium Prochlorococcus sp. MED4. Environ Microbiol (2005) 1.05
Periodicities of 10-11bp as indicators of the supercoiled state of genomic DNA. J Mol Biol (2004) 1.05
How to achieve fast entrainment? The timescale to synchronization. PLoS One (2009) 1.04
Heterocyst differentiation: from single mutants to global approaches. Trends Microbiol (2012) 1.03
The Yfr2 ncRNA family, a group of abundant RNA molecules widely conserved in cyanobacteria. RNA Biol (2009) 1.03
Entrainment in a model of the mammalian circadian oscillator. J Biol Rhythms (2005) 1.03
The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803. Microbiology (2008) 1.02
Positive regulation of psbA gene expression by cis-encoded antisense RNAs in Synechocystis sp. PCC 6803. Plant Physiol (2012) 1.02
Two distinct types of 6S RNA in Prochlorococcus. Gene (2007) 1.02
HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. Nucleic Acids Res (2005) 1.02
Genome streamlining results in loss of robustness of the circadian clock in the marine cyanobacterium Prochlorococcus marinus PCC 9511. J Biol Rhythms (2008) 1.01
Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein. Mol Microbiol (2011) 1.00
Structure of transcription factor HetR required for heterocyst differentiation in cyanobacteria. Proc Natl Acad Sci U S A (2011) 0.99
Nonlinear phenomena in contemporary vocal music. J Voice (2004) 0.98
A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria. BMC Genomics (2007) 0.98
DNA motifs and sequence periodicities. In Silico Biol (2006) 0.98
Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction. Proc Natl Acad Sci U S A (2014) 0.97
Systematic functional assessment of human protein-protein interaction maps. Genome Inform (2006) 0.97
Heterocyst-specific transcription of NsiR1, a non-coding RNA encoded in a tandem array of direct repeats in cyanobacteria. J Mol Biol (2010) 0.97
A new chlorophyll d-containing cyanobacterium: evidence for niche adaptation in the genus Acaryochloris. ISME J (2010) 0.97
Biomechanical modeling of register transitions and the role of vocal tract resonators. J Acoust Soc Am (2010) 0.96
Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction. PLoS Comput Biol (2005) 0.95
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Bifurcations and chaos in register transitions of excised larynx experiments. Chaos (2008) 0.93
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Glucosylglycerate: a secondary compatible solute common to marine cyanobacteria from nitrogen-poor environments. Environ Microbiol (2009) 0.92
Draft Genome Sequence of the Filamentous Cyanobacterium Leptolyngbya sp. Strain Heron Island J, Exhibiting Chromatic Acclimation. Genome Announc (2014) 0.92
Mechanism for 12 hr rhythm generation by the circadian clock. Cell Rep (2013) 0.91
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Human chronotypes from a theoretical perspective. PLoS One (2013) 0.90
Biochemical analysis of three putative KaiC clock proteins from Synechocystis sp. PCC 6803 suggests their functional divergence. Microbiology (2013) 0.90