Published in Mol Cell Biol on December 01, 2000
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell (2011) 10.56
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. Proc Natl Acad Sci U S A (2009) 4.58
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution. Proc Natl Acad Sci U S A (2012) 2.79
Control of eukaryotic protein synthesis by upstream open reading frames in the 5'-untranslated region of an mRNA. Biochem J (2002) 2.73
Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo. Cell (2011) 2.55
Ribosomal protein L24 defect in belly spot and tail (Bst), a mouse Minute. Development (2004) 2.54
Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens. Nat Rev Microbiol (2009) 2.54
Constraints on reinitiation of translation in mammals. Nucleic Acids Res (2001) 2.52
Non-canonical translation in RNA viruses. J Gen Virol (2012) 2.50
What determines whether mammalian ribosomes resume scanning after translation of a short upstream open reading frame? Genes Dev (2003) 2.40
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res (2011) 2.26
Brain-derived neurotrophic factor and the development of structural neuronal connectivity. Dev Neurobiol (2010) 2.04
Derepression of the Her-2 uORF is mediated by a novel post-transcriptional control mechanism in cancer cells. Genes Dev (2006) 2.02
Physical evidence for distinct mechanisms of translational control by upstream open reading frames. EMBO J (2001) 2.02
Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements. Cell Mol Life Sci (2012) 1.96
Identification of four highly conserved genes between breakpoint hotspots BP1 and BP2 of the Prader-Willi/Angelman syndromes deletion region that have undergone evolutionary transposition mediated by flanking duplicons. Am J Hum Genet (2003) 1.82
Tracking and coordinating an international curation effort for the CCDS Project. Database (Oxford) (2012) 1.78
Gene expression regulation by upstream open reading frames and human disease. PLoS Genet (2013) 1.76
The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6. Proc Natl Acad Sci U S A (2002) 1.76
SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center. PLoS Biol (2011) 1.68
The key function of a conserved and modified rRNA residue in the ribosomal response to the nascent peptide. EMBO J (2010) 1.67
The mechanism of tryptophan induction of tryptophanase operon expression: tryptophan inhibits release factor-mediated cleavage of TnaC-peptidyl-tRNA(Pro). Proc Natl Acad Sci U S A (2001) 1.66
Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array. Proc Natl Acad Sci U S A (2006) 1.66
Regulation of transcription by unnatural amino acids. Nat Biotechnol (2011) 1.64
Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs. Genome Res (2004) 1.63
The novel ER membrane protein PRO41 is essential for sexual development in the filamentous fungus Sordaria macrospora. Mol Microbiol (2007) 1.63
AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis. Plant Cell (2006) 1.61
Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest. EMBO Rep (2010) 1.59
Inhibition of CHOP translation by a peptide encoded by an open reading frame localized in the chop 5'UTR. Nucleic Acids Res (2001) 1.58
Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nucleic Acids Res (2007) 1.52
Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals. Nucleic Acids Res (2004) 1.49
Genetic identification of nascent peptides that induce ribosome stalling. J Biol Chem (2009) 1.48
Nascent peptide-mediated translation elongation arrest coupled with mRNA degradation in the CGS1 gene of Arabidopsis. Genes Dev (2005) 1.48
Extremely high-level and rapid transient protein production in plants without the use of viral replication. Plant Physiol (2008) 1.48
5'-untranslated regions with multiple upstream AUG codons can support low-level translation via leaky scanning and reinitiation. Nucleic Acids Res (2004) 1.47
The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning. Plant Cell (2005) 1.46
A conserved upstream open reading frame mediates sucrose-induced repression of translation. Plant Cell (2004) 1.45
Nonsense-mediated RNA decay regulation by cellular stress: implications for tumorigenesis. Mol Cancer Res (2010) 1.44
A nascent polypeptide domain that can regulate translation elongation. Proc Natl Acad Sci U S A (2004) 1.43
Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide. Proc Natl Acad Sci U S A (2006) 1.43
Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast. BMC Genomics (2009) 1.42
Identification of functional, endogenous programmed -1 ribosomal frameshift signals in the genome of Saccharomyces cerevisiae. Nucleic Acids Res (2006) 1.40
Epidermal growth factor receptor stimulation activates the RNA binding protein CUG-BP1 and increases expression of C/EBPbeta-LIP in mammary epithelial cells. Mol Cell Biol (2004) 1.39
Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions. BMC Genomics (2013) 1.38
KSHV 2.0: a comprehensive annotation of the Kaposi's sarcoma-associated herpesvirus genome using next-generation sequencing reveals novel genomic and functional features. PLoS Pathog (2014) 1.37
The undertranslated transcriptome reveals widespread translational silencing by alternative 5' transcript leaders. Genome Biol (2006) 1.36
Mechanisms and implications of programmed translational frameshifting. Wiley Interdiscip Rev RNA (2012) 1.34
Eukaryotic translation initiation factor 5 is critical for integrity of the scanning preinitiation complex and accurate control of GCN4 translation. Mol Cell Biol (2005) 1.34
Inhibition of translation termination mediated by an interaction of eukaryotic release factor 1 with a nascent peptidyl-tRNA. Mol Cell Biol (2002) 1.33
uORFs with unusual translational start codons autoregulate expression of eukaryotic ornithine decarboxylase homologs. Proc Natl Acad Sci U S A (2008) 1.33
Powdery mildew-induced Mla mRNAs are alternatively spliced and contain multiple upstream open reading frames. Plant Physiol (2003) 1.31
Evolutionary conservation suggests a regulatory function of AUG triplets in 5'-UTRs of eukaryotic genes. Nucleic Acids Res (2005) 1.31
S-adenosyl-L-methionine is an effector in the posttranscriptional autoregulation of the cystathionine gamma-synthase gene in Arabidopsis. Proc Natl Acad Sci U S A (2003) 1.30
Expression of the Alzheimer protease BACE1 is suppressed via its 5'-untranslated region. EMBO Rep (2004) 1.27
Differential utilization of upstream AUGs in the beta-secretase mRNA suggests that a shunting mechanism regulates translation. Proc Natl Acad Sci U S A (2004) 1.26
C/EBPbetaDeltauORF mice--a genetic model for uORF-mediated translational control in mammals. Genes Dev (2010) 1.25
TOR and S6K1 promote translation reinitiation of uORF-containing mRNAs via phosphorylation of eIF3h. EMBO J (2013) 1.24
Before It Gets Started: Regulating Translation at the 5' UTR. Comp Funct Genomics (2012) 1.22
Alternative initiation and splicing in dicer gene expression in human breast cells. Breast Cancer Res (2005) 1.20
Upstream AUGs in embryonic proinsulin mRNA control its low translation level. EMBO J (2003) 1.19
Stem-loop III in the 5' untranslated region is a cis-acting element in bovine coronavirus defective interfering RNA replication. J Virol (2003) 1.18
Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5. Nucleic Acids Res (2011) 1.18
Translation repression by GLD-1 protects its mRNA targets from nonsense-mediated mRNA decay in C. elegans. Genes Dev (2004) 1.17
Quantitative profiling of initiating ribosomes in vivo. Nat Methods (2014) 1.17
Promoters, transcripts, and regulatory proteins of Mungbean yellow mosaic geminivirus. J Virol (2005) 1.16
Irreversible translation arrest in the reperfused brain. J Cereb Blood Flow Metab (2006) 1.15
Trans-regulation of the expression of the transcription factor MtHAP2-1 by a uORF controls root nodule development. Genes Dev (2008) 1.15
The role of alternative translation start sites in the generation of human protein diversity. Mol Genet Genomics (2005) 1.14
Sucrose control of translation mediated by an upstream open reading frame-encoded peptide. Plant Physiol (2009) 1.12
An upstream open reading frame modulates ebola virus polymerase translation and virus replication. PLoS Pathog (2013) 1.12
Geminivirus infection up-regulates the expression of two Arabidopsis protein kinases related to yeast SNF1- and mammalian AMPK-activating kinases. Plant Physiol (2006) 1.12
Leaky scanning and reinitiation regulate BACE1 gene expression. Mol Cell Biol (2006) 1.11
CCAAT/enhancer binding proteins in normal mammary development and breast cancer. Breast Cancer Res (2002) 1.11
An upstream open reading frame controls translation of var2csa, a gene implicated in placental malaria. PLoS Pathog (2009) 1.10
Translational control of SCL-isoform expression in hematopoietic lineage choice. Genes Dev (2003) 1.10
Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages. Elife (2014) 1.09
New universal rules of eukaryotic translation initiation fidelity. PLoS Comput Biol (2013) 1.09
Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay. BMC Genomics (2010) 1.07
Role of antibiotic ligand in nascent peptide-dependent ribosome stalling. Proc Natl Acad Sci U S A (2011) 1.07
An upstream open reading frame and the context of the two AUG codons affect the abundance of mitochondrial and nuclear RNase H1. Mol Cell Biol (2010) 1.07
Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation. BMC Bioinformatics (2007) 1.06
Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites. BMC Bioinformatics (2008) 1.06
PSGL-1 and mTOR regulate translation of ROCK-1 and physiological functions of macrophages. EMBO J (2007) 1.06
Translational regulation of BACE-1 expression in neuronal and non-neuronal cells. Nucleic Acids Res (2004) 1.05
Many lncRNAs, 5'UTRs, and pseudogenes are translated and some are likely to express functional proteins. Elife (2015) 1.04
A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation. Mol Cell (2015) 1.04
The uORF-containing thrombopoietin mRNA escapes nonsense-mediated decay (NMD). Nucleic Acids Res (2006) 1.03
An upstream open reading frame impedes translation of the huntingtin gene. Nucleic Acids Res (2002) 1.03
Alterations of the 5'untranslated region of SLC16A12 lead to age-related cataract. Invest Ophthalmol Vis Sci (2010) 1.03
Complex translational regulation of BACE1 involves upstream AUGs and stimulatory elements within the 5' untranslated region. Nucleic Acids Res (2007) 1.03
Dual targeting of Arabidopsis holocarboxylase synthetase1: a small upstream open reading frame regulates translation initiation and protein targeting. Plant Physiol (2007) 1.02
Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Plant Physiol (2007) 1.02
Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale. Wiley Interdiscip Rev RNA (2013) 1.02
Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens. Genome Biol (2014) 1.01
Translation of the first upstream ORF in the hepatitis B virus pregenomic RNA modulates translation at the core and polymerase initiation codons. Nucleic Acids Res (2005) 1.01
Autogenous translational regulation of the Borna disease virus negative control factor X from polycistronic mRNA using host RNA helicases. PLoS Pathog (2009) 1.01
Translational repression of mouse mu opioid receptor expression via leaky scanning. Nucleic Acids Res (2007) 1.00
mRNA translation regulation by the Gly-Ala repeat of Epstein-Barr virus nuclear antigen 1. J Virol (2008) 1.00
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The leader peptide of yeast gene CPA1 is essential for the translational repression of its expression. Cell (1987) 4.91
The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames. Cell (2000) 4.59
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Effect of sequence context at stop codons on efficiency of reinitiation in GCN4 translational control. Mol Cell Biol (1994) 2.17
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Translational inhibition by a human cytomegalovirus upstream open reading frame despite inefficient utilization of its AUG codon. J Virol (1995) 1.47
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Regulation of the p53 protein by the MDM2 oncoprotein--thirty-eighth G.H.A. Clowes Memorial Award Lecture. Cancer Res (1999) 1.37
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