Archaeal dominance in the mesopelagic zone of the Pacific Ocean.

PubWeight™: 7.21‹?› | Rank: Top 1%

🔗 View Article (PMID 11206545)

Published in Nature on January 25, 2001

Authors

M B Karner1, E F DeLong, D M Karl

Author Affiliations

1: University of Hawaii, Department of Oceanography, Honolulu 96822, USA. mkarner@soest.hawaii.edu

Articles citing this

(truncated to the top 100)

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci U S A (2005) 7.04

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol (2002) 5.90

Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol (2006) 5.77

Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol Mol Biol Rev (2007) 5.24

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature (2009) 4.84

Archaeal nitrification in the ocean. Proc Natl Acad Sci U S A (2006) 4.59

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc Natl Acad Sci U S A (2010) 4.12

Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One (2011) 4.04

Temporal changes in archaeal diversity and chemistry in a mid-ocean ridge subseafloor habitat. Appl Environ Microbiol (2002) 3.97

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci U S A (2006) 3.85

Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl Environ Microbiol (2003) 3.60

Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proc Natl Acad Sci U S A (2006) 3.46

Diversity and distribution of methanotrophic archaea at cold seeps. Appl Environ Microbiol (2005) 3.45

Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proc Natl Acad Sci U S A (2006) 3.34

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci U S A (2011) 3.25

Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean. Appl Environ Microbiol (2005) 3.13

Microbial ecology of the dark ocean above, at, and below the seafloor. Microbiol Mol Biol Rev (2011) 2.97

A role for the ESCRT system in cell division in archaea. Science (2008) 2.94

Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proc Natl Acad Sci U S A (2007) 2.82

Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton. Appl Environ Microbiol (2001) 2.76

Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon. Proc Natl Acad Sci U S A (2006) 2.66

Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean. Appl Environ Microbiol (2004) 2.64

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proc Natl Acad Sci U S A (2008) 2.56

Autotrophic carbon fixation in archaea. Nat Rev Microbiol (2010) 2.36

Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre. Appl Environ Microbiol (2009) 2.35

Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Appl Environ Microbiol (2002) 2.24

Interactions between diatoms and bacteria. Microbiol Mol Biol Rev (2012) 2.23

Prokaryotic metabolic activity and community structure in Antarctic continental shelf sediments. Appl Environ Microbiol (2003) 2.23

Metagenomic characterization of Chesapeake Bay virioplankton. Appl Environ Microbiol (2007) 2.22

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology. Curr Opin Microbiol (2011) 2.14

Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea. Appl Environ Microbiol (2002) 1.96

Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian Sea. Appl Environ Microbiol (2002) 1.92

Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblages. Appl Environ Microbiol (2004) 1.89

Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean. Environ Microbiol (2009) 1.89

Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari, Mexico. Appl Environ Microbiol (2006) 1.87

Ecological aspects of the distribution of different autotrophic CO2 fixation pathways. Appl Environ Microbiol (2011) 1.86

Metagenomics of the deep Mediterranean, a warm bathypelagic habitat. PLoS One (2007) 1.78

Quantum dots as strain- and metabolism-specific microbiological labels. Appl Environ Microbiol (2003) 1.78

Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea. Appl Environ Microbiol (2012) 1.77

Two bacteria phylotypes are predominant in the Suiyo seamount hydrothermal plume. Appl Environ Microbiol (2004) 1.75

Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii. Genome Res (2003) 1.75

Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment. Proc Natl Acad Sci U S A (2003) 1.72

Prokaryote diversity and taxonomy: current status and future challenges. Philos Trans R Soc Lond B Biol Sci (2004) 1.68

Phylogenetic diversity of nitrogenase (nifH) genes in deep-sea and hydrothermal vent environments of the Juan de Fuca Ridge. Appl Environ Microbiol (2003) 1.67

Stratified communities of active Archaea in deep marine subsurface sediments. Appl Environ Microbiol (2006) 1.63

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype. ISME J (2014) 1.60

Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales? Genome Biol (2005) 1.60

The origin and evolution of Archaea: a state of the art. Philos Trans R Soc Lond B Biol Sci (2006) 1.54

Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean. Proc Natl Acad Sci U S A (2014) 1.53

Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean. Science (2012) 1.53

Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria. Appl Environ Microbiol (2010) 1.53

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments. ISME J (2012) 1.51

Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara. ISME J (2010) 1.49

Prokaryotic lifestyles in deep sea habitats. Extremophiles (2007) 1.49

Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton. Appl Environ Microbiol (2002) 1.48

Past and future rainfall in the Horn of Africa. Sci Adv (2015) 1.45

Axial differences in community structure of Crenarchaeota and Euryarchaeota in the highly compartmentalized gut of the soil-feeding termite Cubitermes orthognathus. Appl Environ Microbiol (2001) 1.44

Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Appl Environ Microbiol (2006) 1.41

Novel PCR primers for the archaeal phylum Thaumarchaeota designed based on the comparative analysis of 16S rRNA gene sequences. PLoS One (2014) 1.39

Role for urea in nitrification by polar marine Archaea. Proc Natl Acad Sci U S A (2012) 1.38

A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters. ISME J (2012) 1.34

Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes. Appl Environ Microbiol (2004) 1.34

Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage. ISME J (2010) 1.33

Identification of novel positive-strand RNA viruses by metagenomic analysis of archaea-dominated Yellowstone hot springs. J Virol (2012) 1.33

The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats. Front Microbiol (2013) 1.30

Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1. J Bacteriol (2011) 1.30

Nonmarine crenarchaeol in Nevada hot springs. Appl Environ Microbiol (2004) 1.30

Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea). ISME J (2011) 1.28

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs. ISME J (2012) 1.27

Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments. Extremophiles (2008) 1.26

Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep. PLoS One (2010) 1.26

Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone. ISME J (2011) 1.24

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters. Proc Natl Acad Sci U S A (2013) 1.23

Going deeper: metagenome of a hadopelagic microbial community. PLoS One (2011) 1.23

Coping with our cold planet. Appl Environ Microbiol (2008) 1.22

Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation. Proc Natl Acad Sci U S A (2014) 1.22

Molecular analysis of the diversity of sulfate-reducing and sulfur-oxidizing prokaryotes in the environment, using aprA as functional marker gene. Appl Environ Microbiol (2007) 1.21

Communities of archaea and bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps, and evidence of ammonia-oxidizing Crenarchaeota. Appl Environ Microbiol (2006) 1.20

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation. Proc Natl Acad Sci U S A (2014) 1.19

Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota. Int J Syst Evol Microbiol (2014) 1.18

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses. ISME J (2013) 1.18

Fate of heterotrophic microbes in pelagic habitats: focus on populations. Microbiol Mol Biol Rev (2005) 1.18

Autotrophic carbon dioxide assimilation in Thermoproteales revisited. J Bacteriol (2009) 1.17

A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters. ISME J (2012) 1.15

Intact membrane lipids of "Candidatus Nitrosopumilus maritimus," a cultivated representative of the cosmopolitan mesophilic group I Crenarchaeota. Appl Environ Microbiol (2008) 1.15

Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume. ISME J (2012) 1.15

Histones in crenarchaea. J Bacteriol (2005) 1.15

Microbial Surface Colonization and Biofilm Development in Marine Environments. Microbiol Mol Biol Rev (2015) 1.14

Diversity and stratification of archaea in a hypersaline microbial mat. Appl Environ Microbiol (2008) 1.14

Cultivation of mesophilic soil crenarchaeotes in enrichment cultures from plant roots. Appl Environ Microbiol (2005) 1.13

Impact of virioplankton on archaeal and bacterial community richness as assessed in seawater batch cultures. Appl Environ Microbiol (2004) 1.13

High abundance of ammonia-oxidizing Archaea in coastal waters, determined using a modified DNA extraction method. Appl Environ Microbiol (2010) 1.12

Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems. Appl Environ Microbiol (2004) 1.12

Phylogenetic diversity and spatial distribution of the microbial community associated with the Caribbean deep-water sponge Polymastia cf. corticata by 16S rRNA, aprA, and amoA gene analysis. Microb Ecol (2008) 1.11

Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment. Appl Microbiol Biotechnol (2010) 1.11

Archaea on human skin. PLoS One (2013) 1.09

Cold adaptation in the Antarctic Archaeon Methanococcoides burtonii involves membrane lipid unsaturation. J Bacteriol (2004) 1.09

Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfidic Urania deep hypersaline basin. Proc Natl Acad Sci U S A (2009) 1.09

Archaeal communities in a tropical estuarine ecosystem: Guanabara Bay, Brazil. Microb Ecol (2007) 1.09

Archaeal amoA gene diversity points to distinct biogeography of ammonia-oxidizing Crenarchaeota in the ocean. Environ Microbiol (2012) 1.09

Articles by these authors

Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. J Bacteriol (1988) 21.38

Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol (1991) 18.78

Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science (2000) 10.82

Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl Environ Microbiol (1997) 6.51

Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Appl Environ Microbiol (1990) 5.98

Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon. J Bacteriol (1996) 5.95

Proteorhodopsin phototrophy in the ocean. Nature (2001) 5.73

Methane-consuming archaebacteria in marine sediments. Nature (1999) 5.44

Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays. Appl Environ Microbiol (2000) 5.24

Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol (1995) 5.04

Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol (1994) 4.87

Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Appl Environ Microbiol (1998) 4.85

Unicellular cyanobacteria fix N2 in the subtropical North Pacific Ocean. Nature (2001) 4.77

A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. Proc Natl Acad Sci U S A (1996) 4.73

Cellular nucleotide measurements and applications in microbial ecology. Microbiol Rev (1980) 4.34

Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science (2001) 4.29

Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ Microbiol (2000) 3.99

Phosphate depletion in the western North Atlantic Ocean. Science (2000) 3.83

A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl Environ Microbiol (1996) 3.53

A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl Environ Microbiol (2000) 3.02

Application of rRNA-based probes for observing marine nanoplanktonic protists. Appl Environ Microbiol (1993) 2.99

Phylogenetic characterization and in situ localization of the bacterial symbiont of shipworms (Teredinidae: Bivalvia) by using 16S rRNA sequence analysis and oligodeoxynucleotide probe hybridization. Appl Environ Microbiol (1991) 2.95

Effects of luciferin concentration on the quantitative assay of ATP using crude luciferase preparations. Anal Biochem (1976) 2.40

Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria. Appl Environ Microbiol (1996) 2.34

Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur. Appl Environ Microbiol (2002) 2.24

Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum. J Bacteriol (1998) 2.10

Adaptation of the membrane lipids of a deep-sea bacterium to changes in hydrostatic pressure. Science (1985) 1.98

Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host. Proc Natl Acad Sci U S A (2007) 1.87

Climate change and the integrity of science. Science (2010) 1.80

Screening of a fosmid library of marine environmental genomic DNA fragments reveals four clones related to members of the order Planctomycetales. Appl Environ Microbiol (1998) 1.77

Design and application of rRNA-targeted oligonucleotide probes for the dissimilatory iron- and manganese-reducing bacterium Shewanella putrefaciens. Appl Environ Microbiol (1993) 1.60

Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay. Microb Ecol (2004) 1.51

Human pharmacology and clinical evaluation of an oral carbenicillin preparation. Clin Pharmacol Ther (1971) 1.44

Top predators in the Southern ocean: a major leak in the biological carbon pump. Science (1991) 1.37

Characterization of a DNA polymerase from the uncultivated psychrophilic archaeon Cenarchaeum symbiosum. J Bacteriol (1997) 1.33

Aquatic ecology. Phosphorus, the staff of life. Nature (2000) 1.28

Isolation of anaerobic respiratory mutants of Shewannella putrefaciens and genetic analysis of mutants deficient in anaerobic growth on Fe3+. J Bacteriol (1994) 1.21

Laboratory calibrations of the [h]adenine technique for measuring rates of RNA and DNA synthesis in marine microorganisms. Appl Environ Microbiol (1984) 1.20

Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker. J Bacteriol (1999) 1.15

Influence of deep ocean sewage outfalls on the microbial activity of the surrounding sediment. Appl Environ Microbiol (1985) 1.12

Occurrence and metabolic activity of organisms under the ross ice shelf, antarctica, at station j9. Science (1979) 1.06

A rapid sensitive method for the measurement of guanine ribonucleotides in bacterial and environmental extracts. Anal Biochem (1978) 1.05

Catabolism of tritiated thymidine by aquatic microbial communities and incorporation of tritium into RNA and protein. Appl Environ Microbiol (1990) 0.98

Resolving a methane mystery. Nature (2000) 0.87

Parathyroid hormone status and renal responsiveness in familial hypophosphatemic rickets. J Clin Endocrinol Metab (1975) 0.85

A novel method for the measurement of dissolved adenosine and guanosine triphosphate in aquatic habitats: applications to marine microbial ecology. J Microbiol Methods (2001) 0.82

Fasting hypoglycemia associated with disopyramide. Am Heart J (1983) 0.76

Method for Assessing Heterogeneity in Turnover Rates within Microbial Communities. Appl Environ Microbiol (1986) 0.75

Insulin treatment for type 2 diabetes. JAMA (1998) 0.75

ATP as a biomass indicator for closed ecosystems. Biosystems (1983) 0.75

Response. Science (1992) 0.75

Quantification of chemiluminescent DNA probes using liquid scintillation counting. Anal Biochem (1993) 0.75

The National Association of Marine Laboratories: a connected web for studying long-term changes in U.S. coastal and marine waters. Biol Bull (1996) 0.75

A new source of 'new' nitrogen in the sea. Trends Microbiol (2000) 0.75