Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea.

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Published in Proc Natl Acad Sci U S A on April 26, 2010

Authors

C B Walker1, J R de la Torre, M G Klotz, H Urakawa, N Pinel, D J Arp, C Brochier-Armanet, P S G Chain, P P Chan, A Gollabgir, J Hemp, M Hügler, E A Karr, M Könneke, M Shin, T J Lawton, T Lowe, W Martens-Habbena, L A Sayavedra-Soto, D Lang, S M Sievert, A C Rosenzweig, G Manning, D A Stahl

Author Affiliations

1: Department of Civil and Environmental Engineering, University of Washington, Seattle, WA 98195, USA.

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Archaea in coastal marine environments. Proc Natl Acad Sci U S A (1992) 24.98

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The small nucleolar RNAs. Annu Rev Biochem (1995) 6.26

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Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol (1990) 28.74

The phylogeny of prokaryotes. Science (1980) 24.57

Microbial ecology and evolution: a ribosomal RNA approach. Annu Rev Microbiol (1986) 22.39

The genome sequence of Schizosaccharomyces pombe. Nature (2002) 14.26

Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms. Appl Environ Microbiol (1992) 10.81

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence. Nucleic Acids Res (1980) 9.50

Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol (1994) 9.21

The oligonucleotide probe database. Appl Environ Microbiol (1996) 9.18

Use of rRNA fluorescence in situ hybridization for measuring the activity of single cells in young and established biofilms. Appl Environ Microbiol (1993) 7.77

Genomics. Genome project standards in a new era of sequencing. Science (2009) 7.72

Molecular weights of coliphages and coliphage DNA. 3. Contour length and molecular weight of DNA from bacteriophages T4, T5 and T7, and from bovine papilloma virus. J Mol Biol (1970) 7.20

Secondary structure model for 23S ribosomal RNA. Nucleic Acids Res (1981) 7.12

Construction and properties of an integrable plasmid for Bacillus subtilis. J Bacteriol (1983) 7.12

Analysis of hydrothermal vent-associated symbionts by ribosomal RNA sequences. Science (1984) 7.06

Dual staining of natural bacterioplankton with 4',6-diamidino-2-phenylindole and fluorescent oligonucleotide probes targeting kingdom-level 16S rRNA sequences. Appl Environ Microbiol (1992) 6.83

Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences. Appl Environ Microbiol (1993) 6.44

Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences. Appl Environ Microbiol (1985) 6.06

Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies. Appl Environ Microbiol (1996) 5.99

Simplified quantitative electron microscopy of biopolymers. Biopolymers (1970) 5.37

Natural relationships among sulfate-reducing eubacteria. J Bacteriol (1989) 5.35

Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization. Appl Environ Microbiol (1994) 4.84

Netrins are diffusible chemotropic factors for commissural axons in the embryonic spinal cord. Cell (1994) 4.74

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Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. J Bacteriol (1994) 4.43

Test statistics and sample size formulae for comparative binomial trials with null hypothesis of non-zero risk difference or non-unity relative risk. Stat Med (1990) 4.43

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Diversity and origin of Desulfovibrio species: phylogenetic definition of a family. J Bacteriol (1990) 3.68

Crystal structure of double-stranded DNA containing the major adduct of the anticancer drug cisplatin. Nature (1995) 3.67

Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes. Appl Environ Microbiol (1992) 3.48

Construction of the mycoplasma evolutionary tree from 5S rRNA sequence data. Proc Natl Acad Sci U S A (1985) 3.38

Interaction of Ammonia Monooxygenase from Nitrosomonas europaea with Alkanes, Alkenes, and Alkynes. Appl Environ Microbiol (1988) 3.20

Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp. J Bacteriol (1987) 3.17

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Electron microscopy of size and shape of viral DNA in solutions of different ionic strengths. J Mol Biol (1967) 3.16

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Crenarchaeota in Lake Michigan sediment. Appl Environ Microbiol (1997) 2.99

Development of the Drosophila tracheal system occurs by a series of morphologically distinct but genetically coupled branching events. Development (1996) 2.85

Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology. Appl Environ Microbiol (1997) 2.83

Taxon-specific probes for the cellulolytic genus Fibrobacter reveal abundant and novel equine-associated populations. Appl Environ Microbiol (1995) 2.74

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An unusual 5S rRNA, from Sulfolobus acidocaldarius, and its implications for a general 5S rRNA structure. Nucleic Acids Res (1981) 2.66

Phylogenetic analysis of the genera Thiobacillus and Thiomicrospira by 5S rRNA sequences. J Bacteriol (1985) 2.62

Community structure of a microbial mat: the phylogenetic dimension. Proc Natl Acad Sci U S A (1994) 2.57

Diversity of sulfate-reducing bacteria in oxic and anoxic regions of a microbial mat characterized by comparative analysis of dissimilatory sulfite reductase genes. Appl Environ Microbiol (1999) 2.55

14C2H2- and 14CO2-labeling studies of the de novo synthesis of polypeptides by Nitrosomonas europaea during recovery from acetylene and light inactivation of ammonia monooxygenase. J Biol Chem (1992) 2.52

Purification and properties of the particulate hydrogenase from the bacteroids of soybean root nodules. Biochim Biophys Acta (1979) 2.41

Dog and rat pancreatic phospholipases A2: complete amino acid sequences deduced from complementary DNAs. J Biochem (1986) 2.36

Structural basis for copper transfer by the metallochaperone for the Menkes/Wilson disease proteins. Nat Struct Biol (2000) 2.26

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Factors Limiting Aliphatic Chlorocarbon Degradation by Nitrosomonas europaea: Cometabolic Inactivation of Ammonia Monooxygenase and Substrate Specificity. Appl Environ Microbiol (1991) 2.19

Competition and coexistence of sulfate-reducing and methanogenic populations in anaerobic biofilms. Appl Environ Microbiol (1996) 2.13

Mice with disrupted GM2/GD2 synthase gene lack complex gangliosides but exhibit only subtle defects in their nervous system. Proc Natl Acad Sci U S A (1996) 2.10

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Genetic control of epithelial tube fusion during Drosophila tracheal development. Development (1996) 1.95

Cometabolic degradation of chlorinated alkenes by alkene monooxygenase in a propylene-grown Xanthobacter strain. Appl Environ Microbiol (1992) 1.93

The gene encoding ammonia monooxygenase subunit A exists in three nearly identical copies in Nitrosospira sp. NpAV. FEMS Microbiol Lett (1996) 1.91

Glutamate-receptor genes in plants. Nature (1998) 1.86

An enzymic reduction system for metmyoglobin and methemoglobin, and its application to functional studies of oxygen carriers. Biochim Biophys Acta (1973) 1.82

Oxidation of monohalogenated ethanes and n-chlorinated alkanes by whole cells of Nitrosomonas europaea. J Bacteriol (1990) 1.81

B cells of HIV-1-infected patients bind virions through CD21-complement interactions and transmit infectious virus to activated T cells. J Exp Med (2000) 1.79

Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach. Environ Microbiol (2001) 1.79

Sulphate reduction and vertical distribution of sulphate-reducing bacteria quantified by rRNA slot-blot hybridization in a coastal marine sediment. Environ Microbiol (1999) 1.76

'Brain attack'--aneurysmal subarachnoid haemorrhage: death due to delayed diagnosis. J R Coll Physicians Lond (1997) 1.76

Unexpected population distribution in a microbial mat community: sulfate-reducing bacteria localized to the highly oxic chemocline in contrast to a eukaryotic preference for anoxia. Appl Environ Microbiol (1999) 1.75

Identification of binding sites for the 86-kilodalton IE2 protein of human cytomegalovirus within an IE2-responsive viral early promoter. J Virol (1994) 1.73

Shunt implantation: reducing the incidence of shunt infection. J Neurosurg (1992) 1.69

Sentinel lymph node biopsy with metastasis: can axillary dissection be avoided in some patients with breast cancer? J Clin Oncol (1999) 1.69

In vitro activation of ammonia monooxygenase from Nitrosomonas europaea by copper. J Bacteriol (1993) 1.68

The immunogenic glycoprotein gp35-37 of human herpesvirus 8 is encoded by open reading frame K8.1. J Virol (1998) 1.66

Multiple snoRNA gene clusters from Arabidopsis. RNA (2001) 1.62

Gas-chromatographic method of analysis for urinary organic acids. II. Description of the procedure, and its application to diagnosis of patients with organic acidurias. Clin Chem (1980) 1.60

The crystal structure of a hyper-thermophilic carboxylesterase from the archaeon Archaeoglobus fulgidus. J Mol Biol (2001) 1.58

Results of radiosurgery for brain stem arteriovenous malformations. J Neurol Neurosurg Psychiatry (2000) 1.56

Metabolism and excretion of rivaroxaban, an oral, direct factor Xa inhibitor, in rats, dogs, and humans. Drug Metab Dispos (2009) 1.53

Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay. Microb Ecol (2004) 1.51

The diameter of coronary arteries in infants and children without heart disease. Eur J Pediatr (1989) 1.51

Differential expression of E-cadherin in lobular and ductal neoplasms of the breast and its biologic and diagnostic implications. Am J Clin Pathol (2001) 1.51

Use of identification cards by underage youth to purchase tobacco. JAMA (2001) 1.51

Spatiotemporal distribution of marine magnetotactic bacteria in a seasonally stratified coastal salt pond. Appl Environ Microbiol (2004) 1.50

Development of an oligonucleotide probe targeting 16S rRNA and its application for detection and quantitation of the ruminal bacterium Synergistes jonesii in a mixed-population chemostat. Appl Environ Microbiol (1993) 1.50

Transformations of Aromatic Compounds by Nitrosomonas europaea. Appl Environ Microbiol (1994) 1.50

Axillary web syndrome after axillary dissection. Am J Surg (2001) 1.49

Chemotherapeutic drugs released from polymers: distribution of 1,3-bis(2-chloroethyl)-1-nitrosourea in the rat brain. Pharm Res (1996) 1.45

Precursor-specific nucleotide sequences can govern RNA folding. Cell (1979) 1.44

Two distinct monooxygenases for alkane oxidation in Nocardioides sp. strain CF8. Appl Environ Microbiol (2001) 1.43

Analysis of rewarming curves in Raynaud's phenomenon of various aetiologies. J Hand Surg Eur Vol (2009) 1.43

Migration of cardiac neural crest cells in Splotch embryos. Development (2000) 1.43

Delayed improvement in exercise capacity after cardioversion of atrial fibrillation to sinus rhythm. Br Heart J (1988) 1.41

The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: development of probes for Ruminococcus species and evidence for bacteriocin production. Appl Environ Microbiol (1994) 1.41

Proteinuria and the expression of the podocyte slit diaphragm protein, nephrin, in diabetic nephropathy: effects of angiotensin converting enzyme inhibition. Diabetologia (2002) 1.40

Prolonged akinetic mutism due to multiple sclerosis. J Neuropsychiatry Clin Neurosci (1995) 1.40

Safe paediatric neurosurgery 2001. Br J Neurosurg (2002) 1.40

Bilateral thickening of the pericapsular renal area in a patient with refractory oedema of the legs. Nephrol Dial Transplant (1999) 1.39