Published in J Bacteriol on April 01, 2001
Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening. Structure (2008) 1.91
A gold standard set of mechanistically diverse enzyme superfamilies. Genome Biol (2006) 1.52
On the origins of cyanuric acid hydrolase: purification, substrates, and prevalence of AtzD from Pseudomonas sp. strain ADP. Appl Environ Microbiol (2003) 1.30
Arthrobacter aurescens TC1 metabolizes diverse s-triazine ring compounds. Appl Environ Microbiol (2002) 1.28
Purification, substrate range, and metal center of AtzC: the N-isopropylammelide aminohydrolase involved in bacterial atrazine metabolism. J Bacteriol (2002) 1.22
Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily. Proc Natl Acad Sci U S A (2012) 1.17
Evolution of efficient pathways for degradation of anthropogenic chemicals. Nat Chem Biol (2009) 1.14
Missing in action: enzyme functional annotations in biological databases. Nat Chem Biol (2009) 1.11
Evolution of catabolic pathways: Genomic insights into microbial s-triazine metabolism. J Bacteriol (2006) 1.09
Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution. Bioinformatics (2010) 1.09
Expanding the enzyme universe: accessing non-natural reactions by mechanism-guided directed evolution. Angew Chem Int Ed Engl (2015) 1.05
Atrazine biodegradation in the lab and in the field: enzymatic activities and gene regulation. Microb Biotechnol (2008) 0.93
Hydroxyatrazine N-ethylaminohydrolase (AtzB): an amidohydrolase superfamily enzyme catalyzing deamination and dechlorination. J Bacteriol (2007) 0.91
Assignment of pterin deaminase activity to an enzyme of unknown function guided by homology modeling and docking. J Am Chem Soc (2013) 0.90
Intramolecular epistasis and the evolution of a new enzymatic function. PLoS One (2012) 0.90
Biodegradation of 5-nitroanthranilic acid by Bradyrhizobium sp. strain JS329. Appl Environ Microbiol (2010) 0.89
The enzymatic basis for pesticide bioremediation. Indian J Microbiol (2008) 0.88
Catalytic improvement and evolution of atrazine chlorohydrolase. Appl Environ Microbiol (2009) 0.87
Large-scale analysis of orthologs and paralogs under covarion-like and constant-but-different models of amino acid evolution. Mol Biol Evol (2010) 0.87
Enzyme recruitment and its role in metabolic expansion. Biochemistry (2014) 0.85
Enzymatic degradation of chlorodiamino-s-triazine. Appl Environ Microbiol (2002) 0.84
Leveraging structure for enzyme function prediction: methods, opportunities, and challenges. Trends Biochem Sci (2014) 0.83
X-ray structure of the amidase domain of AtzF, the allophanate hydrolase from the cyanuric acid-mineralizing multienzyme complex. Appl Environ Microbiol (2014) 0.83
Phylogenetics in the bioinformatics culture of understanding. Comp Funct Genomics (2004) 0.82
The HigB/HigA toxin/antitoxin system of Pseudomonas aeruginosa influences the virulence factors pyochelin, pyocyanin, and biofilm formation. Microbiologyopen (2016) 0.82
Molecular and biochemical characterization of the 5-nitroanthranilic acid degradation pathway in Bradyrhizobium sp. strain JS329. J Bacteriol (2011) 0.81
Prediction of function in protein superfamilies. F1000 Biol Rep (2009) 0.80
Structure-guided discovery of new deaminase enzymes. J Am Chem Soc (2013) 0.80
Plasmid localization and organization of melamine degradation genes in Rhodococcus sp. strain Mel. Appl Environ Microbiol (2011) 0.80
Isolation and characterization of atrazine mineralizing Bacillus subtilis strain HB-6. PLoS One (2014) 0.80
Occurrence, diversity and community structure of culturable atrazine degraders in industrial and agricultural soils exposed to the herbicide in Shandong Province, P.R. China. BMC Microbiol (2016) 0.80
Functional Trade-Offs in Promiscuous Enzymes Cannot Be Explained by Intrinsic Mutational Robustness of the Native Activity. PLoS Genet (2016) 0.79
Bacterial ammeline metabolism via guanine deaminase. J Bacteriol (2009) 0.78
Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate. Biochemistry (2014) 0.78
Ancient Evolution and Recent Evolution Converge for the Biodegradation of Cyanuric Acid and Related Triazines. Appl Environ Microbiol (2016) 0.77
The structure of the hexameric atrazine chlorohydrolase AtzA. Acta Crystallogr D Biol Crystallogr (2015) 0.77
Stepwise enhancement of catalytic performance of haloalkane dehalogenase LinB towards β-hexachlorocyclohexane. AMB Express (2014) 0.77
Rapid bursts and slow declines: on the possible evolutionary trajectories of enzymes. J R Soc Interface (2015) 0.77
Prediction of functionally important residues in globular proteins from unusual central distances of amino acids. BMC Struct Biol (2011) 0.77
Function discovery and structural characterization of a methylphosphonate esterase. Biochemistry (2015) 0.76
Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: investigating acetamidase gene function. Sci Rep (2016) 0.76
Exploring functionally related enzymes using radially distributed properties of active sites around the reacting points of bound ligands. BMC Struct Biol (2012) 0.75
Risks associated with melamine and related triazine contamination of food. Emerg Health Threats J (2009) 0.75
Identification of a new class of adenosine deaminase from Helicobacter pylori with homologs among diverse taxa. J Bacteriol (2013) 0.75
Large-scale search for genes on which positive selection may operate. Mol Biol Evol (1996) 6.14
On the constancy of the evolutionary rate of cistrons. J Mol Evol (1971) 4.49
An evolutionary treasure: unification of a broad set of amidohydrolases related to urease. Proteins (1997) 4.42
Isolation and Characterization of a Pseudomonas sp. That Mineralizes the s-Triazine Herbicide Atrazine. Appl Environ Microbiol (1995) 2.96
Degradation and mineralization of atrazine by a soil bacterial isolate. Appl Environ Microbiol (1995) 2.57
Cloning and comparison of the DNA encoding ammelide aminohydrolase and cyanuric acid amidohydrolase from three s-triazine-degrading bacterial strains. J Bacteriol (1991) 2.10
Within- and between-species DNA sequence variation and the 'footprint' of natural selection. Gene (1999) 2.06
Accepted mutations in a gene family: evolutionary diversification of duplicated DNA. J Mol Evol (1982) 2.03
Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: gene sequence, enzyme purification, and protein characterization. J Bacteriol (1996) 1.97
Catalytic plasticity of fatty acid modification enzymes underlying chemical diversity of plant lipids. Science (1998) 1.88
Purification and Characterization of an Inducible s-Triazine Hydrolase from Rhodococcus corallinus NRRL B-15444R. Appl Environ Microbiol (1994) 1.88
Novel enzymic hydrolytic dehalogenation of a chlorinated aromatic. Science (1991) 1.81
Mössbauer studies of alkane omega-hydroxylase: evidence for a diiron cluster in an integral-membrane enzyme. Proc Natl Acad Sci U S A (1997) 1.67
The atrazine catabolism genes atzABC are widespread and highly conserved. J Bacteriol (1998) 1.59
AtzC is a new member of the amidohydrolase protein superfamily and is homologous to other atrazine-metabolizing enzymes. J Bacteriol (1998) 1.58
Molecular basis of a bacterial consortium: interspecies catabolism of atrazine. Appl Environ Microbiol (1998) 1.55
Cloning, characterization, and expression of a gene region from Pseudomonas sp. strain ADP involved in the dechlorination of atrazine. Appl Environ Microbiol (1995) 1.45
The atzB gene of Pseudomonas sp. strain ADP encodes the second enzyme of a novel atrazine degradation pathway. Appl Environ Microbiol (1997) 1.40
Biodegradation of atrazine by Agrobacterium radiobacter J14a and use of this strain in bioremediation of contaminated soil. Appl Environ Microbiol (1998) 1.39
Structure of 4-chlorobenzoyl coenzyme A dehalogenase determined to 1.8 A resolution: an enzyme catalyst generated via adaptive mutation. Biochemistry (1996) 1.39
Cloning and expression of the s-triazine hydrolase gene (trzA) from Rhodococcus corallinus and development of Rhodococcus recombinant strains capable of dealkylating and dechlorinating the herbicide atrazine. J Bacteriol (1995) 1.34
Dechlorination of Atrazine by a Rhizobium sp. Isolate. Appl Environ Microbiol (1997) 1.29
Characterization of an atrazine-degrading Pseudaminobacter sp. isolated from Canadian and French agricultural soils. Appl Environ Microbiol (2000) 1.27
Silent nucleotide substitutions and the molecular evolutionary clock. Science (1980) 1.22
Abalone sperm lysin: unusual mode of evolution of a gamete recognition protein. Zygote (1993) 1.16
Three-dimensional structure of the binuclear metal center of phosphotriesterase. Biochemistry (1995) 1.16
A pre-transition-state mimic of an enzyme: X-ray structure of adenosine deaminase with bound 1-deazaadenosine and zinc-activated water. Biochemistry (1993) 1.14
The atzABC genes encoding atrazine catabolism are located on a self-transmissible plasmid in Pseudomonas sp. strain ADP. Appl Environ Microbiol (1998) 1.14
Substrate specificity of atrazine chlorohydrolase and atrazine-catabolizing bacteria. Appl Environ Microbiol (2000) 1.11
Mechanistically diverse enzyme superfamilies: the importance of chemistry in the evolution of catalysis. Curr Opin Chem Biol (1998) 1.10
Three-dimensional structure of phosphotriesterase: an enzyme capable of detoxifying organophosphate nerve agents. Biochemistry (1994) 1.06
Interchange of catalytic activity within the 2-enoyl-coenzyme A hydratase/isomerase superfamily based on a common active site template. Biochemistry (1999) 1.04
Refined 2.5 A structure of murine adenosine deaminase at pH 6.0. J Mol Biol (1992) 0.90
Preliminary X-ray analysis of crystals of murine adenosine deaminase. J Mol Biol (1988) 0.85
Role of Na+ in transport of Hg2+ and induction of the Tn21 mer operon. Appl Environ Microbiol (1994) 0.82
Expression of naphthalene oxidation genes in Escherichia coli results in the biosynthesis of indigo. Science (1983) 5.10
The University of Minnesota Biocatalysis/Biodegradation database: microorganisms, genomics and prediction. Nucleic Acids Res (2000) 4.62
Competition of Rhizobium japonicum Strains in Early Stages of Soybean Nodulation. Appl Environ Microbiol (1983) 3.67
Use of repetitive DNA sequences and the PCR To differentiate Escherichia coli isolates from human and animal sources. Appl Environ Microbiol (2000) 3.53
Haloalkene oxidation by the soluble methane monooxygenase from Methylosinus trichosporium OB3b: mechanistic and environmental implications. Biochemistry (1990) 3.52
Accumulation of Mn(II) in Deinococcus radiodurans facilitates gamma-radiation resistance. Science (2004) 3.39
Mineralization of the s-triazine ring of atrazine by stable bacterial mixed cultures. Appl Environ Microbiol (1993) 3.10
Isolation and Characterization of a Pseudomonas sp. That Mineralizes the s-Triazine Herbicide Atrazine. Appl Environ Microbiol (1995) 2.96
The University of Minnesota Biocatalysis/Biodegradation Database: specialized metabolism for functional genomics. Nucleic Acids Res (1999) 2.93
The University of Minnesota Biocatalysis/Biodegradation Database: emphasizing enzymes. Nucleic Acids Res (2001) 2.85
Optimization of trichloroethylene oxidation by methanotrophs and the use of a colorimetric assay to detect soluble methane monooxygenase activity. Biodegradation (1990) 2.81
Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP. J Bacteriol (2001) 2.30
Purification and properties of ferredoxinTOL. A component of toluene dioxygenase from Pseudomonas putida F1. J Biol Chem (1985) 2.30
Bacterial carbon-phosphorus lyase: products, rates, and regulation of phosphonic and phosphinic acid metabolism. J Bacteriol (1987) 2.26
Engineering a recombinant Deinococcus radiodurans for organopollutant degradation in radioactive mixed waste environments. Nat Biotechnol (1998) 2.10
Genetics of competition for nodulation of legumes. Annu Rev Microbiol (1992) 2.07
Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: gene sequence, enzyme purification, and protein characterization. J Bacteriol (1996) 1.97
Use of repetitive sequences and the polymerase chain reaction technique to classify genetically related Bradyrhizobium japonicum serocluster 123 strains. Appl Environ Microbiol (1993) 1.92
Desaturation, dioxygenation, and monooxygenation reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp. strain 9816-4. J Bacteriol (1995) 1.84
Purification and characterization of toluene 2-monooxygenase from Burkholderia cepacia G4. Biochemistry (1995) 1.79
Influence of soil variables on in situ plasmid transfer from Escherichia coli to Rhizobium fredii. Appl Environ Microbiol (1989) 1.60
The atrazine catabolism genes atzABC are widespread and highly conserved. J Bacteriol (1998) 1.59
AtzC is a new member of the amidohydrolase protein superfamily and is homologous to other atrazine-metabolizing enzymes. J Bacteriol (1998) 1.58
Molecular basis of a bacterial consortium: interspecies catabolism of atrazine. Appl Environ Microbiol (1998) 1.55
Trichloroethylene degradation by Escherichia coli containing the cloned Pseudomonas putida F1 toluene dioxygenase genes. Appl Environ Microbiol (1989) 1.49
Cloning, characterization, and expression of a gene region from Pseudomonas sp. strain ADP involved in the dechlorination of atrazine. Appl Environ Microbiol (1995) 1.45
Involvement of the phosphate regulon and the psiD locus in carbon-phosphorus lyase activity of Escherichia coli K-12. J Bacteriol (1987) 1.42
Biodegradation of atrazine and related s-triazine compounds: from enzymes to field studies. Appl Microbiol Biotechnol (2002) 1.41
The atzB gene of Pseudomonas sp. strain ADP encodes the second enzyme of a novel atrazine degradation pathway. Appl Environ Microbiol (1997) 1.40
Host Plant Effects on Nodulation and Competitiveness of the Bradyrhizobium japonicum Serotype Strains Constituting Serocluster 123. Appl Environ Microbiol (1989) 1.38
Engineering Deinococcus radiodurans for metal remediation in radioactive mixed waste environments. Nat Biotechnol (2000) 1.37
Trichloroethylene oxidation by purified toluene 2-monooxygenase: products, kinetics, and turnover-dependent inactivation. J Bacteriol (1997) 1.37
Dichloromethane dehalogenase with improved catalytic activity isolated from a fast-growing dichloromethane-utilizing bacterium. J Bacteriol (1988) 1.36
Physiologic determinants of radiation resistance in Deinococcus radiodurans. Appl Environ Microbiol (2000) 1.33
Electron microscopy of nickel-containing methanogenic enzymes: methyl reductase and F420-reducing hydrogenase. J Bacteriol (1987) 1.33
Plasmids pJP4 and r68.45 Can Be Transferred between Populations of Bradyrhizobia in Nonsterile Soil. Appl Environ Microbiol (1993) 1.32
A Selective Medium for the Isolation and Quantification of Bradyrhizobium japonicum and Bradyrhizobium elkanii Strains from Soils and Inoculants. Appl Environ Microbiol (1994) 1.26
Therapeutic transplantation of the distal gut microbiota. Mucosal Immunol (2010) 1.24
MIF protein are theta-class glutathione S-transferase homologs. Protein Sci (1993) 1.23
Effect of Brazilian green propolis on the production of reactive oxygen species by stimulated neutrophils. J Ethnopharmacol (2004) 1.20
Novel enzyme activities and functional plasticity revealed by recombining highly homologous enzymes. Chem Biol (2001) 1.20
Biodegradation, biotransformation, and biocatalysis (b3). Appl Environ Microbiol (2002) 1.18
Trichloroethylene oxidation by toluene dioxygenase. Biochem Biophys Res Commun (1992) 1.16
Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River. J Appl Microbiol (2013) 1.15
Manganese(II)-dependent extradiol-cleaving catechol dioxygenase from Arthrobacter globiformis CM-2. Biochemistry (1996) 1.15
The atzABC genes encoding atrazine catabolism are located on a self-transmissible plasmid in Pseudomonas sp. strain ADP. Appl Environ Microbiol (1998) 1.14
Substrate specificity of atrazine chlorohydrolase and atrazine-catabolizing bacteria. Appl Environ Microbiol (2000) 1.11
Biodegradation of low-molecular-weight halogenated hydrocarbons by methanotrophic bacteria. FEMS Microbiol Rev (1990) 1.09
Rapid evolution of bacterial catabolic enzymes: a case study with atrazine chlorohydrolase. Biochemistry (2001) 1.09
Evolution of catabolic pathways: Genomic insights into microbial s-triazine metabolism. J Bacteriol (2006) 1.09
A manganese-dependent dioxygenase from Arthrobacter globiformis CM-2 belongs to the major extradiol dioxygenase family. J Bacteriol (1995) 1.08
Tellurium and Selenium Resistance in Rhizobia and Its Potential Use for Direct Isolation of Rhizobium meliloti from Soil. Appl Environ Microbiol (1994) 1.08
Metabolism of polyhalogenated compounds by a genetically engineered bacterium. Nature (1994) 1.08
Influence of earthworm activity on gene transfer from Pseudomonas fluorescens to indigenous soil bacteria. Appl Environ Microbiol (1996) 1.05
In vivo transfer of pR68.45 from Pseudomonas aeruginosa into indigenous soil bacteria. Microb Releases (1993) 1.05
Reductive dehalogenation by cytochrome P450CAM: substrate binding and catalysis. Biochemistry (1993) 1.02
Plasmid Transfer between Spatially Separated Donor and Recipient Bacteria in Earthworm-Containing Soil Microcosms. Appl Environ Microbiol (1997) 1.01
Genome analysis of Bradyrhizobium japonicum serocluster 123 field isolates by using field inversion gel electrophoresis. Appl Environ Microbiol (1990) 1.01
Characterization of cytochromes c550 and c555 from Bradyrhizobium japonicum: cloning, mutagenesis, and sequencing of the c555 gene (cycC). J Bacteriol (1991) 1.01
Cytochrome mutants of bradyrhizobium induced by transposon tn5. Plant Physiol (1989) 1.00
Hyperreiterated DNA regions are conserved among Bradyrhizobium japonicum serocluster 123 strains. Appl Environ Microbiol (1992) 0.98
Oxidation of aliphatic olefins by toluene dioxygenase: enzyme rates and product identification. J Bacteriol (1997) 0.98
Field-scale remediation of atrazine-contaminated soil using recombinant Escherichia coli expressing atrazine chlorohydrolase. Environ Microbiol (2000) 0.97
Rat liver protein linking chemical and immunological detoxification systems. Nature (1992) 0.97
The Bradyrhizobium japonicum nolA gene encodes three functionally distinct proteins. J Bacteriol (1999) 0.96
Gene expression profiling of Escherichia coli in response to interactions with the lettuce rhizosphere. J Appl Microbiol (2012) 0.95
Toluene dioxygenase from Pseudomonas putida F1. Methods Enzymol (1990) 0.94
Toluene 2-Monooxygenase-Dependent Growth of Burkholderia cepacia G4/PR1 on Diethyl Ether. Appl Environ Microbiol (1997) 0.94
Host-Controlled Restriction of Nodulation by Bradyrhizobium japonicum Strains in Serogroup 110. Appl Environ Microbiol (1995) 0.92
Sphingobacterium sp. strain PM2-P1-29 harbours a functional tet(X) gene encoding for the degradation of tetracycline. J Appl Microbiol (2009) 0.90
Diversity among Field Populations of Bradyrhizobium japonicum in Poland. Appl Environ Microbiol (1995) 0.90
Rapid Colored-Nodule Assay for Assessing Root Exudate-Enhanced Competitiveness of Bradyrhizobium japonicum. Appl Environ Microbiol (1986) 0.89
The Bradyrhizobium japonicum serocluster 123 hyperreiterated DNA region, HRS1, has DNA and amino acid sequence homology to IS1380, an insertion sequence from Acetobacter pasteurianus. Appl Environ Microbiol (1993) 0.89
Reaction of rat liver glutathione S-transferases and bacterial dichloromethane dehalogenase with dihalomethanes. J Biol Chem (1994) 0.89
Fate of 2,2,2-trichloroacetaldehyde (chloral hydrate) produced during trichloroethylene oxidation by methanotrophs. Appl Environ Microbiol (1991) 0.86
HTLV-I and HTLV-II infections among HIV-1 seropositive patients in Sao Paulo, Brazil. Eur J Epidemiol (1994) 0.85
Restriction of Nodulation by Bradyrhizobium japonicum Is Mediated by Factors Present in the Roots of Glycine max. Appl Environ Microbiol (1995) 0.85
Regioselective dioxygenation of ortho-trifluoromethylbenzoate by Pseudomonas aeruginosa 142: evidence for 1,2-dioxygenation as a mechanism in ortho-halobenzoate dehalogenation. Biochem Biophys Res Commun (1995) 0.85
Manganese(II) active site mutants of 3,4-dihydroxyphenylacetate 2,3-dioxygenase from Arthrobacter globiformis strain CM-2. Biochemistry (1997) 0.85
Immunological demonstration of a unique 3,4-dihydroxyphenylacetate 2,3-dioxygenase in soil Arthrobacter strains. Appl Environ Microbiol (1992) 0.85
Oxidation of low molecular weight chloroalkanes by cytochrome P450CAM. Biochem Biophys Res Commun (1994) 0.84
Cosubstrate effects in reductive dehalogenation by Pseudomonas putida G786 expressing cytochrome P-450CAM. Biodegradation (1993) 0.82
Metabolism of xenobiotic compounds by enzymes in cell extracts of the fungus Cunninghamella elegans. Biochem J (1982) 0.81
Metabolism of chlorofluorocarbons and polybrominated compounds by Pseudomonas putida G786(pHG-2) via an engineered metabolic pathway. Appl Environ Microbiol (1994) 0.81
A marker-dense physical map of the Bradyrhizobium japonicum genome. Genome Res (2001) 0.81