Published in Genes Dev on July 01, 2001
The microRNAs of Caenorhabditis elegans. Genes Dev (2003) 17.70
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci U S A (2002) 7.99
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Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res (2007) 2.75
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Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA (2003) 2.57
MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli. J Bacteriol (2004) 2.53
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The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A (2012) 2.39
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Identification of the Hfq-binding site on DsrA RNA: Hfq binds without altering DsrA secondary structure. RNA (2003) 2.31
Small RNA regulators and the bacterial response to stress. Cold Spring Harb Symp Quant Biol (2006) 2.31
A computational approach to identify genes for functional RNAs in genomic sequences. Nucleic Acids Res (2001) 2.28
Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing. Nucleic Acids Res (2009) 2.25
Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics. Nucleic Acids Res (2003) 2.15
RNA chaperone activity of the Sm-like Hfq protein. EMBO Rep (2003) 2.13
Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2. Nucleic Acids Res (2006) 2.11
An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J (2012) 2.10
Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. Genome Biol (2009) 2.06
Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence. Nucleic Acids Res (2008) 2.04
A PhoQ/P-regulated small RNA regulates sensitivity of Escherichia coli to antimicrobial peptides. Mol Microbiol (2009) 2.03
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. BMC Bioinformatics (2006) 2.01
Identification of small Hfq-binding RNAs in Listeria monocytogenes. RNA (2006) 2.00
An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc Natl Acad Sci U S A (2006) 1.95
Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli. Nucleic Acids Res (2003) 1.91
RNA expression analysis using an antisense Bacillus subtilis genome array. J Bacteriol (2001) 1.89
Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli. J Bacteriol (2006) 1.86
Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA. EMBO J (2010) 1.85
Repression of small toxic protein synthesis by the Sib and OhsC small RNAs. Mol Microbiol (2008) 1.85
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Small membrane proteins found by comparative genomics and ribosome binding site models. Mol Microbiol (2008) 1.84
Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol (2005) 1.82
Genome-wide detection of novel regulatory RNAs in E. coli. Genome Res (2011) 1.82
High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs. PLoS One (2008) 1.80
Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases. BMC Struct Biol (2003) 1.80
Experimental approaches to identify non-coding RNAs. Nucleic Acids Res (2006) 1.80
The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli. Nucleic Acids Res (2008) 1.80
Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target. Genes Dev (2009) 1.78
Identification of small RNAs in Mycobacterium tuberculosis. Mol Microbiol (2009) 1.75
The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus. PLoS Genet (2008) 1.74
The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior. J Bacteriol (2008) 1.68
SigmaE regulates and is regulated by a small RNA in Escherichia coli. J Bacteriol (2007) 1.68
Discovery of Fur binding site clusters in Escherichia coli by information theory models. Nucleic Acids Res (2007) 1.67
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability. Proc Natl Acad Sci U S A (2009) 1.66
An antibody-based microarray assay for small RNA detection. Nucleic Acids Res (2006) 1.65
The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator. Nucleic Acids Res (2008) 1.63
Characterization of the role of ribonucleases in Salmonella small RNA decay. Nucleic Acids Res (2007) 1.62
6S RNA function enhances long-term cell survival. J Bacteriol (2004) 1.61
The Escherichia coli small protein MntS and exporter MntP optimize the intracellular concentration of manganese. PLoS Genet (2015) 1.61
Toward a protein profile of Escherichia coli: comparison to its transcription profile. Proc Natl Acad Sci U S A (2003) 1.60
Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae. J Bacteriol (2005) 1.60
The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res (2007) 1.55
RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq. Proc Natl Acad Sci U S A (2012) 1.54
Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis. EMBO J (2010) 1.53
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A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya. RNA (2003) 1.52
Searching for RNA genes using base-composition statistics. Nucleic Acids Res (2002) 1.51
Quorum sensing in Escherichia coli is signaled by AI-2/LsrR: effects on small RNA and biofilm architecture. J Bacteriol (2007) 1.47
Reprogramming of anaerobic metabolism by the FnrS small RNA. Mol Microbiol (2010) 1.46
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Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD. J Bacteriol (2007) 1.41
Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs. Proc Natl Acad Sci U S A (2004) 1.41
Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence. Proc Natl Acad Sci U S A (2011) 1.38
Sigma E controls biogenesis of the antisense RNA MicA. Nucleic Acids Res (2007) 1.38
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