Published in Nucleic Acids Res on January 01, 2003
NONCODE: an integrated knowledge database of non-coding RNAs. Nucleic Acids Res (2005) 3.16
RNAdb--a comprehensive mammalian noncoding RNA database. Nucleic Acids Res (2005) 2.84
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change. BMC Bioinformatics (2006) 2.01
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. Nucleic Acids Res (2006) 1.94
Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element. RNA (2003) 1.89
A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription. BMC Genomics (2005) 1.47
RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences. Nucleic Acids Res (2004) 1.38
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. Nucleic Acids Res (2006) 1.24
Noncoding RNAs database (ncRNAdb). Nucleic Acids Res (2006) 1.08
From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease. Endocr Rev (2014) 0.98
From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite. Physiol Genomics (2010) 0.96
Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation. Nucleic Acids Res (2009) 0.96
MicroRNAs - Biology and clinical applications. J Oral Maxillofac Pathol (2014) 0.93
Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. Nucleic Acids Res (2009) 0.92
Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis. Int J Mol Sci (2011) 0.92
Non-coding RNAs revealed during identification of genes involved in chicken immune responses. Immunogenetics (2008) 0.91
miRAS: a data processing system for miRNA expression profiling study. BMC Bioinformatics (2007) 0.75
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell (1993) 64.62
Identification of novel genes coding for small expressed RNAs. Science (2001) 44.44
An extensive class of small RNAs in Caenorhabditis elegans. Science (2001) 34.17
MicroRNAs in plants. Genes Dev (2002) 20.12
Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev (2001) 7.65
Novel small RNA-encoding genes in the intergenic regions of Escherichia coli. Curr Biol (2001) 7.56
Tsix, a gene antisense to Xist at the X-inactivation centre. Nat Genet (1999) 6.77
An expanding universe of noncoding RNAs. Science (2002) 5.96
The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription. Nature (2001) 5.14
7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes. Nature (2001) 5.11
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex. Cell (1999) 4.65
Computational identification of noncoding RNAs in E. coli by comparative genomics. Curr Biol (2001) 4.58
6S RNA regulates E. coli RNA polymerase activity. Cell (2000) 3.81
X-chromosome inactivation: counting, choice and initiation. Nat Rev Genet (2001) 3.75
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinformatics (2000) 3.37
Small RNAs in Escherichia coli. Trends Microbiol (1999) 3.20
Noncoding RNA genes identified in AT-rich hyperthermophiles. Proc Natl Acad Sci U S A (2002) 2.33
A computational approach to identify genes for functional RNAs in genomic sequences. Nucleic Acids Res (2001) 2.28
The non-coding RNAs as riboregulators. Nucleic Acids Res (2001) 2.11
Ordered assembly of roX RNAs into MSL complexes on the dosage-compensated X chromosome in Drosophila. Curr Biol (2000) 1.98
Identification and analysis of Arabidopsis expressed sequence tags characteristic of non-coding RNAs. Plant Physiol (2001) 1.76
Targeted disruption of the human LIT1 locus defines a putative imprinting control element playing an essential role in Beckwith-Wiedemann syndrome. Hum Mol Genet (2000) 1.71
Transcripts of the MHM region on the chicken Z chromosome accumulate as non-coding RNA in the nucleus of female cells adjacent to the DMRT1 locus. Chromosome Res (2001) 1.39
Imprinting in Angelman and Prader-Willi syndromes. Curr Opin Genet Dev (1998) 1.23
Beyond the proteome: non-coding regulatory RNAs. Genome Biol (2002) 0.96
Identification of an endogenous RNA transcribed from the antisense strand of the HFE gene. Hum Mol Genet (2001) 0.92
Loss of imprinting of long QT intronic transcript 1 in colorectal cancer. Oncology (2001) 0.88
TTY2: a multicopy Y-linked gene family. Genome Res (2001) 0.82
5S Ribosomal RNA Database. Nucleic Acids Res (2002) 5.95
Design of antisense oligonucleotides stabilized by locked nucleic acids. Nucleic Acids Res (2002) 2.58
Local RNA target structure influences siRNA efficacy: systematic analysis of intentionally designed binding regions. J Mol Biol (2005) 1.86
Identification of modifications in microbial, native tRNA that suppress immunostimulatory activity. J Exp Med (2012) 1.57
Application of locked nucleic acids to improve aptamer in vivo stability and targeting function. Nucleic Acids Res (2004) 1.54
Comparison of different antisense strategies in mammalian cells using locked nucleic acids, 2'-O-methyl RNA, phosphorothioates and small interfering RNA. Nucleic Acids Res (2003) 1.42
Probing the SELEX process with next-generation sequencing. PLoS One (2011) 1.34
A new frontier for molecular medicine: noncoding RNAs. Biochim Biophys Acta (2005) 1.31
5 S rRNA: structure and interactions. Biochem J (2003) 1.20
A streamlined protocol for emulsion polymerase chain reaction and subsequent purification. Anal Biochem (2010) 1.15
RNA cleaving '10-23' DNAzymes with enhanced stability and activity. Nucleic Acids Res (2003) 1.14
Comparative study of DNA enzymes and ribozymes against the same full-length messenger RNA of the vanilloid receptor subtype I. J Biol Chem (2001) 1.13
Cellular uptake and localization of a Cy3-labeled siRNA specific for the serine/threonine kinase Pim-1. Oligonucleotides (2003) 1.10
Silencing of vanilloid receptor TRPV1 by RNAi reduces neuropathic and visceral pain in vivo. Biochem Biophys Res Commun (2006) 1.09
Noncoding RNAs database (ncRNAdb). Nucleic Acids Res (2006) 1.08
The first crystal structure of an RNA racemate. Acta Crystallogr D Biol Crystallogr (2006) 1.08
Sequence requirements in the catalytic core of the "10-23" DNA enzyme. J Biol Chem (2002) 1.08
Noncoding RNA transcripts. J Appl Genet (2003) 1.06
The Nano-tag, a streptavidin-binding peptide for the purification and detection of recombinant proteins. Protein Expr Purif (2004) 1.03
Investigation of TRPV1 loss-of-function phenotypes in transgenic shRNA expressing and knockout mice. Mol Cell Neurosci (2007) 0.99
A DNA aptamer with high affinity and specificity for therapeutic anthracyclines. Anal Biochem (2007) 0.98
Searching sequence space for high-affinity binding peptides using ribosome display. J Mol Biol (2003) 0.97
Beyond the proteome: non-coding regulatory RNAs. Genome Biol (2002) 0.96
Gaining target access for deoxyribozymes. J Mol Biol (2004) 0.95
Selection of RNA aptamers to the Alzheimer's disease amyloid peptide. Biochem Biophys Res Commun (2002) 0.95
Structure of mistletoe lectin I from Viscum album in complex with the phytohormone zeatin. Biochim Biophys Acta (2008) 0.94
Detection of oncofetal h19 RNA in rheumatoid arthritis synovial tissue. Am J Pathol (2003) 0.94
A calibrated diversity assay for nucleic acid libraries using DiStRO--a Diversity Standard of Random Oligonucleotides. Nucleic Acids Res (2009) 0.94
Antinociceptive effect of antisense oligonucleotides against the vanilloid receptor VR1/TRPV1. Neurochem Int (2006) 0.94
Analysis of structure and function of tenascin-C. Int J Biochem Cell Biol (2006) 0.92
Evaluation of the dynamic structure of DsrA RNA from E. coli and its functional consequences. J Biochem (2006) 0.90
The 1.2A crystal structure of an E. coli tRNASer)acceptor stem microhelix reveals two magnesium binding sites. Biochem Biophys Res Commun (2009) 0.90
Semi-automated selection of DNA aptamers using magnetic particle handling. Biotechniques (2007) 0.89
Deletion analysis in the catalytic region of the 10-23 DNA enzyme. FEBS Lett (2005) 0.88
Promising human brain tumors therapy with interference RNA intervention (iRNAi). Cancer Biol Ther (2010) 0.87
Regulation by RNA. Int Rev Cytol (2003) 0.87
Suppression of human brain tumor with interference RNA specific for tenascin-C. Cancer Biol Ther (2006) 0.87
Spiegelzymes: sequence specific hydrolysis of L-RNA with mirror image hammerhead ribozymes and DNAzymes. PLoS One (2013) 0.87
The crystal structure of an 'All Locked' nucleic acid duplex. Nucleic Acids Res (2010) 0.87
A nature of conformational changes of yeast tRNA(Phe). High hydrostatic pressure effects. Int J Biol Macromol (2005) 0.87
Developing an effective RNA interference strategy against a plus-strand RNA virus: silencing of coxsackievirus B3 and its cognate coxsackievirus-adenovirus receptor. Biol Chem (2005) 0.87
Maintaining inhibition: siRNA double expression vectors against coxsackieviral RNAs. J Mol Biol (2004) 0.86
Biosensor-based on-site explosives detection using aptamers as recognition elements. Anal Bioanal Chem (2008) 0.85
Global changes in DNA methylation in seeds and seedlings of Pyrus communis after seed desiccation and storage. PLoS One (2013) 0.85
Structure prediction, evolution and ligand interaction of CHASE domain. FEBS Lett (2004) 0.85
Highly active low magnesium hammerhead ribozyme. J Biochem (2009) 0.83
Palindromes in proteins. J Protein Chem (2003) 0.83
A new family of ferritin genes from Lupinus luteus--comparative analysis of plant ferritins, their gene structure, and evolution. Mol Biol Evol (2010) 0.83
Squalene monooxygenase - a target for hypercholesterolemic therapy. Biol Chem (2011) 0.82
The mechanism of acidic hydrolysis of esters explains the HDV ribozyme activity. Mol Biol Rep (2008) 0.82
Organelle trafficking of chimeric ribozymes and genetic manipulation of mitochondria. Nucleic Acids Res (2011) 0.82
A multivariate analysis of patients with brain tumors treated with ATN-RNA. Acta Pol Pharm (2009) 0.82
On the importance of the primer activation signal for initiation of tRNA(lys3)-primed reverse transcription of the HIV-1 RNA genome. Nucleic Acids Res (2003) 0.81
Structural similarity of E. coli 5S rRNA in solution and within the ribosome. Biopolymers (2004) 0.81
Crystallization and preliminary X-ray diffraction analysis of a tRNASer acceptor-stem microhelix. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.81
Phloretamide, an apple phenolic compound, activates the Nrf2/ARE pathway in human hepatocytes. Food Chem Toxicol (2012) 0.81
RNA regulation in mammals. Ann N Y Acad Sci (2006) 0.81
Effects of kinetin riboside on proliferation and proapoptotic activities in human normal and cancer cell lines. J Cell Biochem (2011) 0.80
The genetic code--40 years on. Acta Biochim Pol (2007) 0.80
Crystallization and X-ray diffraction analysis of an 'all-locked' nucleic acid duplex derived from a tRNA(Ser) microhelix. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.80
Combination of soluble coxsackievirus-adenovirus receptor and anti-coxsackievirus siRNAs exerts synergistic antiviral activity against coxsackievirus B3. Antiviral Res (2009) 0.80
2D-PAGE as an effective method of RNA degradome analysis. Mol Biol Rep (2011) 0.80
Evaluation of bacterial RNase P RNA as a drug target. Chembiochem (2003) 0.80
Comparative crystallization and preliminary X-ray diffraction studies of locked nucleic acid and RNA stems of a tenascin C-binding aptamer. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.80
Effect of desiccation on the dynamics of genome-wide DNA methylation in orthodox seeds of Acer platanoides L. Plant Physiol Biochem (2014) 0.79
Comprehensive insight into human aminoacyl-tRNA synthetases as autoantigens in idiopathic inflammatory myopathies. Crit Rev Immunol (2007) 0.79
Crystallization and preliminary X-ray diffraction analysis of an Escherichia coli tRNA(Gly) acceptor-stem microhelix. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.79
Lead toxicity through the leadzyme. Mutat Res (2004) 0.79
eHiTS-to-VMD interface application. The search for tyrosine-tRNA ligase inhibitors. J Chem Inf Model (2007) 0.79
Crystallization and preliminary X-ray diffraction data of an LNA 7-mer duplex derived from a ricin aptamer. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.78
Charging of tRNA with non-natural amino acids at high pressure. FEBS J (2006) 0.78
Strand-specific silencing of a picornavirus by RNA interference: evidence for the superiority of plus-strand specific siRNAs. Antiviral Res (2006) 0.78
Human tRNA(Gly) acceptor-stem microhelix: crystallization and preliminary X-ray diffraction analysis at 1.2 A resolution. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.78
RNA aptamers directed against release factor 1 from Thermus thermophilus. FEBS Lett (2002) 0.78
Nucleic acid-based technologies in therapy of malignant gliomas. Curr Pharm Biotechnol (2011) 0.78
[Effect of cigarette smoking on blood lead levels in pregnant women]. Med Wieku Rozwoj (2013) 0.78
Isoenergetic microarray mapping reveals differences in structure between tRNAiMet and tRNAmMet from Lupinus luteus. Nucleic Acids Symp Ser (Oxf) (2008) 0.78
Locked nucleic acid aptamers. Methods Mol Biol (2009) 0.78
Cocrystallizing natural RNA with its unnatural mirror image: biochemical and preliminary X-ray diffraction analysis of a 5S rRNA A-helix racemate. Acta Crystallogr Sect F Struct Biol Cryst Commun (2007) 0.77
Native transfer RNA catalyzes Diels-Alder reaction. Biochem Biophys Res Commun (2002) 0.77
Hydrostatic and osmotic pressure study of the RNA hydration. Mol Biol Rep (2012) 0.77
"Action-at-a distance" of a new DNA oxidative damage product 6-furfuryl-adenine (kinetin) on template properties of modified DNA. Biochim Biophys Acta (2003) 0.77
Pushing the detection limits: the evanescent field in surface plasmon resonance and analyte-induced folding observation of long human telomeric repeats. Biosens Bioelectron (2011) 0.77
5S rRNA is a leadzyme. A molecular basis for lead toxicity. J Biochem (2003) 0.77
A new and efficient method for inhibition of RNA viruses by DNA interference. FEBS J (2009) 0.76
New cytosine derivatives as inhibitors of DNA methylation. Eur J Med Chem (2012) 0.76
[The influence of lead on concentration of the pregnancy-associated plasma protein A (PAPP-A) in pregnant women smoking tobacco--preliminary study]. Przegl Lek (2008) 0.76
A critical role of water in the specific cleavage of the anticodon loop of some eukaryotic methionine initiator tRNAs. Mol Biol Rep (2003) 0.76
Escherichia coli tRNA(Arg) acceptor-stem isoacceptors: comparative crystallization and preliminary X-ray diffraction analysis. Acta Crystallogr Sect F Struct Biol Cryst Commun (2009) 0.75
Binding of the plant hormone kinetin in the active site of Mistletoe Lectin I from Viscum album. Biochim Biophys Acta (2011) 0.75