Published in Bioinformatics on March 22, 2003
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Protein function prediction by massive integration of evolutionary analyses and multiple data sources. BMC Bioinformatics (2013) 1.07
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FFPred 2.0: improved homology-independent prediction of gene ontology terms for eukaryotic protein sequences. PLoS One (2013) 0.98
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Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish. BMC Genomics (2013) 0.97
A protein domain co-occurrence network approach for predicting protein function and inferring species phylogeny. PLoS One (2011) 0.96
Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis. BMC Genomics (2011) 0.94
Three-level prediction of protein function by combining profile-sequence search, profile-profile search, and domain co-occurrence networks. BMC Bioinformatics (2013) 0.92
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Integration of the Gene Ontology into an object-oriented architecture. BMC Bioinformatics (2005) 0.89
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Hierarchical ensemble methods for protein function prediction. ISRN Bioinform (2014) 0.84
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The relationship between protein sequences and their gene ontology functions. BMC Bioinformatics (2006) 0.82
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Identifying Schistosoma japonicum excretory/secretory proteins and their interactions with host immune system. PLoS One (2011) 0.81
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Local function conservation in sequence and structure space. PLoS Comput Biol (2008) 0.81
Predicting protein function by machine learning on amino acid sequences--a critical evaluation. BMC Genomics (2007) 0.81
Structure and function predictions of the Msa protein in Staphylococcus aureus. BMC Bioinformatics (2007) 0.80
Predictability of gene ontology slim-terms from primary structure information in Embryophyta plant proteins. BMC Bioinformatics (2013) 0.80
Predicting DNA-binding specificities of eukaryotic transcription factors. PLoS One (2010) 0.79
Genome-wide identification and characterization of maize expansin genes expressed in endosperm. Mol Genet Genomics (2014) 0.79
Automatic discovery of cross-family sequence features associated with protein function. BMC Bioinformatics (2006) 0.79
The effector candidate repertoire of the arbuscular mycorrhizal fungus Rhizophagus clarus. BMC Genomics (2016) 0.78
Properties and identification of antibiotic drug targets. BMC Bioinformatics (2010) 0.78
Discovery of Azurin-Like Anticancer Bacteriocins from Human Gut Microbiome through Homology Modeling and Molecular Docking against the Tumor Suppressor p53. Biomed Res Int (2016) 0.78
Classifying genes to the correct Gene Ontology Slim term in Saccharomyces cerevisiae using neighbouring genes with classification learning. BMC Genomics (2010) 0.77
Molecular cloning and expression profiling of a chalcone synthase gene from hairy root cultures of Scutellaria viscidula Bunge. Genet Mol Biol (2010) 0.77
Prediction of functional class of proteins and peptides irrespective of sequence homology by support vector machines. Bioinform Biol Insights (2009) 0.76
Characterization of a Novel Endoplasmic Reticulum Protein Involved in Tubercidin Resistance in Leishmania major. PLoS Negl Trop Dis (2016) 0.75
FFPred 3: feature-based function prediction for all Gene Ontology domains. Sci Rep (2016) 0.75
The Membrane Protein LasM Promotes the Culturability of Legionella pneumophila in Water. Front Cell Infect Microbiol (2016) 0.75
Function annotation of peptides generated from the non-coding regions of D. melanogaster genome. Bioinformation (2016) 0.75
Integrating Information in Biological Ontologies and Molecular Networks to Infer Novel Terms. Sci Rep (2016) 0.75
Analyses of the general rule on residue pair frequencies in local amino acid sequences of soluble, ordered proteins. Protein Sci (2013) 0.75
MUC16/CA125 in the context of modular proteins with an annotated role in adhesion-related processes: in silico analysis. Int J Mol Sci (2012) 0.75
ProtNN: fast and accurate protein 3D-structure classification in structural and topological space. BioData Min (2016) 0.75
The effect of bacterial challenge on ferritin regulation in the yellow fever mosquito, Aedes aegypti. Insect Sci (2012) 0.75
Functional prediction of hypothetical proteins in human adenoviruses. Bioinformation (2015) 0.75
A Method for the Annotation of Functional Similarities of Coding DNA Sequences: the Case of a Populated Cluster of Transmembrane Proteins. J Mol Evol (2016) 0.75
A database for orphan genes in Poaceae. Exp Ther Med (2017) 0.75
ScMED7, a sugarcane mediator subunit gene, acts as a regulator of plant immunity and is responsive to diverse stress and hormone treatments. Mol Genet Genomics (2017) 0.75
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