Published in J Comput Biol on January 01, 1998
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A novel Bayesian DNA motif comparison method for clustering and retrieval. PLoS Comput Biol (2008) 1.20
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Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis. Nucleic Acids Res (2009) 1.07
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Functional characterization of transcription factor motifs using cross-species comparison across large evolutionary distances. PLoS Comput Biol (2010) 0.98
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Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. BMC Med (2013) 0.97
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A system-level model for the microbial regulatory genome. Mol Syst Biol (2014) 0.95
Comparative analysis of regulatory motif discovery tools for transcription factor binding sites. Genomics Proteomics Bioinformatics (2007) 0.95
Multiple sequence-specific DNA-binding proteins mediate estrogen receptor signaling through a tethering pathway. Mol Endocrinol (2011) 0.95
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The distribution of GYR- and YLP-like motifs in Drosophila suggests a general role in cuticle assembly and other protein-protein interactions. PLoS One (2010) 0.82
Transcriptional regulation of fatty acid biosynthesis in mycobacteria. Mol Microbiol (2013) 0.82
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions. PLoS Genet (2016) 0.82
CENP-A nucleosomes localize to transcription factor hotspots and subtelomeric sites in human cancer cells. Epigenetics Chromatin (2015) 0.81
Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control. Genome Res (2012) 0.81
Identifying and characterizing Hfq-RNA interactions. Methods (2013) 0.81
Sequence signatures extracted from proximal promoters can be used to predict distal enhancers. Genome Biol (2013) 0.80
Fending off decay: a combinatorial approach in intact cells for identifying mRNA stability elements. RNA (2001) 0.79
Genome-wide prediction and validation of sigma70 promoters in Lactobacillus plantarum WCFS1. PLoS One (2012) 0.79
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A lepidopteran orthologue of reaper reveals functional conservation and evolution of IAP antagonists. Insect Mol Biol (2009) 0.78
Mutagenesis Objective Search and Selection Tool (MOSST): an algorithm to predict structure-function related mutations in proteins. BMC Bioinformatics (2011) 0.78
Application of motif-based tools on evolutionary analysis of multipartite single-stranded DNA viruses. PLoS One (2013) 0.77
Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data. Nucleic Acids Res (2010) 0.77
Algorithmic discovery of methylation "hot spots" in DNA from lymphoma patients. Cancer Inform (2008) 0.76
Molecular evolution of Drosophila Cdc6, an essential DNA replication-licensing gene, suggests an adaptive choice of replication origins. Fly (Austin) (2008) 0.76
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The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science (2006) 21.03
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The sigma 70 family: sequence conservation and evolutionary relationships. J Bacteriol (1992) 9.07
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The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression. Nucleic Acids Res (1984) 6.98
Phylogenetic relationships within cation transporter families of Arabidopsis. Plant Physiol (2001) 4.74
Identification and characterization of genes and mutants for an N-terminal acetyltransferase from yeast. EMBO J (1989) 4.08
Use of keyword hierarchies to interpret gene expression patterns. Bioinformatics (2001) 3.41
Score distributions for simultaneous matching to multiple motifs. J Comput Biol (1997) 3.40
A systematic analysis of human disease-associated gene sequences in Drosophila melanogaster. Genome Res (2001) 2.73
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Overexpression and purification of the sigma subunit of Escherichia coli RNA polymerase. Gene (1983) 1.92
The protein kinase resource. Trends Biochem Sci (1997) 1.85
PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package. Nucleic Acids Res (1986) 1.27
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The megaprior heuristic for discovering protein sequence patterns. Proc Int Conf Intell Syst Mol Biol (1996) 1.09
An integrated Arabidopsis annotation database for Affymetrix Genechip data analysis, and tools for regulatory motif searches. Trends Plant Sci (2001) 1.02
Concerning the accuracy of MAST E-values. Bioinformatics (2000) 0.96
A prototype molecular interactive collaborative environment (MICE). Pac Symp Biocomput (1998) 0.89
Analysis of the structure of chemically synthesized HIV-1 protease complexed with a hexapeptide inhibitor. Part I: Crystallographic refinement of 2 A data. Proteins (1997) 0.86
RNA binding domain of HDV antigen is homologous to the HMG box of SRY. Arch Virol (1999) 0.77
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