PubRank

Hanspeter Herzel

Author PubWeight™ 90.89‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Biological profiling of gene groups utilizing Gene Ontology. Genome Inform 2005 4.10
2 Differential effects of PER2 phosphorylation: molecular basis for the human familial advanced sleep phase syndrome (FASPS). Genes Dev 2006 3.78
3 Spontaneous synchronization of coupled circadian oscillators. Biophys J 2005 2.55
4 UniHI: an entry gate to the human protein interactome. Nucleic Acids Res 2006 2.45
5 Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability. PLoS Comput Biol 2006 2.30
6 Molecular insights into human daily behavior. Proc Natl Acad Sci U S A 2008 2.03
7 Coupling governs entrainment range of circadian clocks. Mol Syst Biol 2010 1.85
8 Effects of sequestration on signal transduction cascades. FEBS J 2006 1.84
9 Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol 2005 1.82
10 Comparison of human protein-protein interaction maps. Bioinformatics 2007 1.79
11 Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Comput Biol 2007 1.71
12 Regulation of clock-controlled genes in mammals. PLoS One 2009 1.65
13 Beta-TrCP1-mediated degradation of PERIOD2 is essential for circadian dynamics. J Biol Rhythms 2007 1.64
14 How robust are switches in intracellular signaling cascades? J Theor Biol 2003 1.47
15 Functioning and robustness of a bacterial circadian clock. Mol Syst Biol 2007 1.46
16 Modeling feedback loops of the Mammalian circadian oscillator. Biophys J 2004 1.45
17 Comparison of biomechanical modeling of register transitions and voice instabilities with excised larynx experiments. J Acoust Soc Am 2007 1.43
18 Recurrent design patterns in the feedback regulation of the mammalian signalling network. Mol Syst Biol 2008 1.41
19 Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations. Philos Trans A Math Phys Eng Sci 2006 1.36
20 Inferring combinatorial regulation of transcription in silico. Nucleic Acids Res 2005 1.26
21 Small RNAs establish delays and temporal thresholds in gene expression. Biophys J 2008 1.24
22 Bifurcation analysis of the regulatory modules of the mammalian G1/S transition. Bioinformatics 2004 1.22
23 Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. Bioinformatics 2008 1.20
24 Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4. Nucleic Acids Res 2003 1.18
25 Tuning the mammalian circadian clock: robust synergy of two loops. PLoS Comput Biol 2011 1.18
26 Nonlinear analysis of irregular animal vocalizations. J Acoust Soc Am 2002 1.17
27 Quantification of circadian rhythms in single cells. PLoS Comput Biol 2009 1.14
28 Measuring similarities between transcription factor binding sites. BMC Bioinformatics 2005 1.13
29 Competing docking interactions can bring about bistability in the MAPK cascade. Biophys J 2007 1.13
30 Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells. PLoS Genet 2010 1.12
31 Global parameter search reveals design principles of the mammalian circadian clock. BMC Syst Biol 2008 1.08
32 Quantitative analysis of ultrasensitive responses. FEBS J 2005 1.08
33 Identification of distinct antibody epitopes and mimotopes from a peptide array of 5520 randomly generated sequences. J Immunol Methods 2002 1.05
34 Periodicities of 10-11bp as indicators of the supercoiled state of genomic DNA. J Mol Biol 2004 1.05
35 How to achieve fast entrainment? The timescale to synchronization. PLoS One 2009 1.04
36 Entrainment in a model of the mammalian circadian oscillator. J Biol Rhythms 2005 1.03
37 HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. Nucleic Acids Res 2005 1.02
38 A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts. FEBS J 2009 1.00
39 Nonlinear phenomena in contemporary vocal music. J Voice 2004 0.98
40 DNA motifs and sequence periodicities. In Silico Biol 2006 0.98
41 Systematic functional assessment of human protein-protein interaction maps. Genome Inform 2006 0.97
42 Biomechanical modeling of register transitions and the role of vocal tract resonators. J Acoust Soc Am 2010 0.96
43 Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction. PLoS Comput Biol 2005 0.95
44 Repeats and correlations in human DNA sequences. Phys Rev E Stat Nonlin Soft Matter Phys 2003 0.94
45 Bifurcations and chaos in register transitions of excised larynx experiments. Chaos 2008 0.93
46 The interplay of cis-regulatory elements rules circadian rhythms in mouse liver. PLoS One 2012 0.93
47 Why do cells cycle with a 24 hour period? Genome Inform 2006 0.92
48 Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Res 2009 0.92
49 Biomechanics and control of vocalization in a non-songbird. J R Soc Interface 2008 0.91
50 Mechanism for 12 hr rhythm generation by the circadian clock. Cell Rep 2013 0.91
51 Human chronotypes from a theoretical perspective. PLoS One 2013 0.90
52 Promoter analysis of Mammalian clock controlled genes. Genome Inform 2007 0.90
53 Visualization of system dynamics using phasegrams. J R Soc Interface 2013 0.90
54 High reproducibility of large-gel two-dimensional electrophoresis. Electrophoresis 2004 0.89
55 Reverse engineering a hierarchical regulatory network downstream of oncogenic KRAS. Mol Syst Biol 2012 0.88
56 Tumor growth rate determines the timing of optimal chronomodulated treatment schedules. PLoS Comput Biol 2010 0.88
57 Circadian desynchronization. Interface Focus 2010 0.84
58 Prediction of regulatory transcription factors in T helper cell differentiation and maintenance. Genome Inform 2010 0.83
59 Prediction of cis-regulatory elements of coregulated genes. Genome Inform 2004 0.83
60 3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming. Nucleic Acids Res 2011 0.83
61 Global analysis of host tissue gene expression in the invasive front of colorectal liver metastases. Int J Cancer 2006 0.83
62 Dissecting the action of an evolutionary conserved non-coding region on renin promoter activity. Nucleic Acids Res 2007 0.83
63 HOMGL-comparing genelists across species and with different accession numbers. Bioinformatics 2004 0.82
64 Regulation of mammalian cell cycle progression in the regenerating liver. J Theor Biol 2011 0.80
65 IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of  T Cell Activation. Front Immunol 2012 0.80
66 Stable IL-2 decision making by endogenous c-Fos amounts in peripheral memory T-helper cells. J Biol Chem 2012 0.80
67 Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett 2008 0.80
68 A model of the mammalian circadian oscillator including the REV-ERBalpha module. Genome Inform 2004 0.79
69 Death of neuronal clusters contributes to variance of age at onset in Huntington's disease. Neurogenetics 2006 0.79
70 Graph-theoretical comparison reveals structural divergence of human protein interaction networks. Genome Inform 2007 0.78
71 A minimal circadian clock model. Genome Inform 2007 0.78
72 A mesoscale model of G1/S phase transition in liver regeneration. J Theor Biol 2008 0.78
73 Regulatory elements of marine cyanobacteria. Genome Inform 2007 0.77
74 Aggregation in Huntington's disease: insights through modelling. Genome Inform 2005 0.77
75 Modeling IL-2 gene expression in human regulatory T cells. Genome Inform 2008 0.76
76 Detecting synchronizations in an asymmetric vocal fold model from time series data. Chaos 2005 0.76
77 Alternans and 2:1 rhythms in an ionic model of heart cells. Biosystems 2002 0.75
78 Sequence-related human proteins cluster by degree of evolutionary conservation. Phys Rev E Stat Nonlin Soft Matter Phys 2004 0.75