Published in J Mol Biol on September 19, 2003
In vivo X-ray footprinting of pre-30S ribosomes reveals chaperone-dependent remodeling of late assembly intermediates. Mol Cell (2013) 1.85
Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering. Mol Cell Proteomics (2010) 1.50
Identification of novel Escherichia coli ribosome-associated proteins using isobaric tags and multidimensional protein identification techniques. J Bacteriol (2007) 1.34
Transcriptome profiling reveals the importance of plasmid pSymB for osmoadaptation of Sinorhizobium meliloti. J Bacteriol (2006) 1.33
The Escherichia coli proteome: past, present, and future prospects. Microbiol Mol Biol Rev (2006) 1.23
Characterization of the ribosome biogenesis landscape in E. coli using quantitative mass spectrometry. J Mol Biol (2012) 1.23
Structural aspects of RbfA action during small ribosomal subunit assembly. Mol Cell (2007) 1.20
The PRC-barrel domain of the ribosome maturation protein RimM mediates binding to ribosomal protein S19 in the 30S ribosomal subunits. RNA (2004) 1.13
Structural basis for the function of a small GTPase RsgA on the 30S ribosomal subunit maturation revealed by cryoelectron microscopy. Proc Natl Acad Sci U S A (2011) 1.05
Suppression of a cold-sensitive mutation in ribosomal protein S5 reveals a role for RimJ in ribosome biogenesis. Mol Microbiol (2008) 1.02
RsgA releases RbfA from 30S ribosome during a late stage of ribosome biosynthesis. EMBO J (2010) 0.98
Activation of mRNA translation by phage protein and low temperature: the case of Lactococcus lactis abortive infection system AbiD1. BMC Mol Biol (2009) 0.94
RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA. Plant Physiol (2013) 0.91
The aminoglycoside resistance methyltransferases from the ArmA/Rmt family operate late in the 30S ribosomal biogenesis pathway. RNA (2010) 0.88
Importance of trmE for growth of the psychrophile Pseudomonas syringae at low temperatures. Appl Environ Microbiol (2009) 0.85
Overexpression of RbfA in the absence of the KsgA checkpoint results in impaired translation initiation. Mol Microbiol (2013) 0.85
Structural insights into the assembly of the 30S ribosomal subunit in vivo: functional role of S5 and location of the 17S rRNA precursor sequence. Protein Cell (2014) 0.85
A Proteomic Perspective on the Bacterial Adaptation to Cold: Integrating OMICs Data of the Psychrotrophic Bacterium Exiguobacterium antarcticum B7. Proteomes (2017) 0.80
Group II intron-ribosome association protects intron RNA from degradation. RNA (2013) 0.79
NMR assignments of the cold-shock protein ribosome-binding factor A (RbfA) from Thermotoga maritima. J Biomol NMR (2005) 0.76
The human RNA-binding protein RBFA promotes the maturation of the mitochondrial ribosome. Biochem J (2017) 0.75
Mutations of ribosomal protein S5 suppress a defect in late-30S ribosomal subunit biogenesis caused by lack of the RbfA biogenesis factor. RNA (2015) 0.75
MazF cleaves cellular mRNAs specifically at ACA to block protein synthesis in Escherichia coli. Mol Cell (2003) 4.63
Protein production and purification. Nat Methods (2008) 3.97
The expression profile of microRNAs in mouse embryos. Nucleic Acids Res (2006) 3.49
Toxin-antitoxin systems in bacteria and archaea. Annu Rev Genet (2011) 2.99
MazF, an mRNA interferase, mediates programmed cell death during multicellular Myxococcus development. Cell (2008) 2.70
Cold-shock induced high-yield protein production in Escherichia coli. Nat Biotechnol (2004) 2.62
Insights into the mRNA cleavage mechanism by MazF, an mRNA interferase. J Biol Chem (2004) 2.57
Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium. Methods Enzymol (2005) 2.54
Regulation of growth and death in Escherichia coli by toxin-antitoxin systems. Nat Rev Microbiol (2011) 2.49
EnvZ-OmpR interaction and osmoregulation in Escherichia coli. J Biol Chem (2002) 2.03
Single protein production in living cells facilitated by an mRNA interferase. Mol Cell (2005) 2.00
Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit. Proc Natl Acad Sci U S A (2008) 1.81
Characterization of mRNA interferases from Mycobacterium tuberculosis. J Biol Chem (2006) 1.80
mRNA interferases, sequence-specific endoribonucleases from the toxin-antitoxin systems. Prog Mol Biol Transl Sci (2009) 1.77
MqsR, a crucial regulator for quorum sensing and biofilm formation, is a GCU-specific mRNA interferase in Escherichia coli. J Biol Chem (2009) 1.74
Characterization of ChpBK, an mRNA interferase from Escherichia coli. J Biol Chem (2005) 1.73
Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage. Mol Microbiol (2009) 1.71
Interference of mRNA function by sequence-specific endoribonuclease PemK. J Biol Chem (2004) 1.68
Suppression of defective ribosome assembly in a rbfA deletion mutant by overexpression of Era, an essential GTPase in Escherichia coli. Mol Microbiol (2003) 1.67
Superoxide dismutase expression attenuates cigarette smoke- or elastase-generated emphysema in mice. Am J Respir Crit Care Med (2005) 1.61
Mechanism of stabilization of a bacterial collagen triple helix in the absence of hydroxyproline. J Biol Chem (2007) 1.56
The mRNA interferases, MazF-mt3 and MazF-mt7 from Mycobacterium tuberculosis target unique pentad sequences in single-stranded RNA. Mol Microbiol (2008) 1.53
NBK/BIK antagonizes MCL-1 and BCL-XL and activates BAK-mediated apoptosis in response to protein synthesis inhibition. Genes Dev (2007) 1.53
Characterization of the interactions within the mazEF addiction module of Escherichia coli. J Biol Chem (2003) 1.48
YeeU enhances the bundling of cytoskeletal polymers of MreB and FtsZ, antagonizing the CbtA (YeeV) toxicity in Escherichia coli. Mol Microbiol (2012) 1.47
Transcription regulation of ompF and ompC by a single transcription factor, OmpR. J Biol Chem (2006) 1.47
The inhibitory mechanism of protein synthesis by YoeB, an Escherichia coli toxin. J Biol Chem (2009) 1.47
Bacterial bioreactors for high yield production of recombinant protein. J Biol Chem (2006) 1.46
Single protein production (SPP) system in Escherichia coli. Nat Protoc (2007) 1.44
Domain arrangement of Der, a switch protein containing two GTPase domains. Structure (2002) 1.39
The nucleic acid melting activity of Escherichia coli CspE is critical for transcription antitermination and cold acclimation of cells. J Biol Chem (2001) 1.37
Inhibitory mechanism of Escherichia coli RelE-RelB toxin-antitoxin module involves a helix displacement near an mRNA interferase active site. J Biol Chem (2009) 1.35
Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli. J Bacteriol (2004) 1.32
YeeV is an Escherichia coli toxin that inhibits cell division by targeting the cytoskeleton proteins, FtsZ and MreB. Mol Microbiol (2010) 1.31
Staphylococcus aureus MazF specifically cleaves a pentad sequence, UACAU, which is unusually abundant in the mRNA for pathogenic adhesive factor SraP. J Bacteriol (2009) 1.31
Three amino acids in Escherichia coli CspE surface-exposed aromatic patch are critical for nucleic acid melting activity leading to transcription antitermination and cold acclimation of cells. J Biol Chem (2002) 1.29
The tandem GTPase, Der, is essential for the biogenesis of 50S ribosomal subunits in Escherichia coli. Mol Microbiol (2006) 1.27
Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad. Biochemistry (2008) 1.27
Structural mechanism of transcriptional autorepression of the Escherichia coli RelB/RelE antitoxin/toxin module. J Mol Biol (2008) 1.26
Enhancement of translation initiation by A/T-rich sequences downstream of the initiation codon in Escherichia coli. J Mol Microbiol Biotechnol (2003) 1.23
Self-association of streptococcus pyogenes collagen-like constructs into higher order structures. Protein Sci (2009) 1.21
Biochemical basis of regulation of human copper-transporting ATPases. Arch Biochem Biophys (2007) 1.21
MazG, a nucleoside triphosphate pyrophosphohydrolase, interacts with Era, an essential GTPase in Escherichia coli. J Bacteriol (2002) 1.20
Complementation analysis of the cold-sensitive phenotype of the Escherichia coli csdA deletion strain. J Bacteriol (2007) 1.18
An interdomain binding site on HIV-1 Nef interacts with PACS-1 and PACS-2 on endosomes to down-regulate MHC-I. Mol Biol Cell (2012) 1.18
Characterization of YafO, an Escherichia coli toxin. J Biol Chem (2009) 1.16
At the crossroads of homoeostasis and disease: roles of the PACS proteins in membrane traffic and apoptosis. Biochem J (2009) 1.15
Identification of a pH sensor in the furin propeptide that regulates enzyme activation. J Biol Chem (2006) 1.14
Interaction of EnvZ, a sensory histidine kinase, with phosphorylated OmpR, the cognate response regulator. Mol Microbiol (2002) 1.13
Production of membrane proteins for NMR studies using the condensed single protein (cSPP) production system. J Struct Funct Genomics (2009) 1.12
Bacillus subtilis MazF-bs (EndoA) is a UACAU-specific mRNA interferase. FEBS Lett (2011) 1.11
Noncognate Mycobacterium tuberculosis toxin-antitoxins can physically and functionally interact. J Biol Chem (2010) 1.11
Characterization of dual substrate binding sites in the homodimeric structure of Escherichia coli mRNA interferase MazF. J Mol Biol (2005) 1.10
Spontaneous subunit exchange and biochemical evidence for trans-autophosphorylation in a dimer of Escherichia coli histidine kinase (EnvZ). J Mol Biol (2003) 1.10
Solution NMR structure of ribosome-binding factor A (RbfA), a cold-shock adaptation protein from Escherichia coli. J Mol Biol (2003) 1.08
Positive selection dictates the choice between kinetic and thermodynamic protein folding and stability in subtilases. Biochemistry (2004) 1.08
Escherichia coli RNase R has dual activities, helicase and RNase. J Bacteriol (2009) 1.07
The New York Consortium on Membrane Protein Structure (NYCOMPS): a high-throughput platform for structural genomics of integral membrane proteins. J Struct Funct Genomics (2010) 1.07
Era and RbfA have overlapping function in ribosome biogenesis in Escherichia coli. J Mol Microbiol Biotechnol (2006) 1.07
The intramolecular chaperone-mediated protein folding. Curr Opin Struct Biol (2008) 1.06
Structural organization of human Cu-transporting ATPases: learning from building blocks. J Biol Inorg Chem (2009) 1.05
The role of the G2 box, a conserved motif in the histidine kinase superfamily, in modulating the function of EnvZ. Mol Microbiol (2002) 1.05
Ras is required for the cyclic AMP-dependent activation of Rap1 via Epac2. Mol Cell Biol (2008) 1.03
Staphylococcus aureus YoeB homologues inhibit translation initiation. J Bacteriol (2009) 1.02
A Streptococcus pyogenes derived collagen-like protein as a non-cytotoxic and non-immunogenic cross-linkable biomaterial. Biomaterials (2010) 1.02
Structural and functional studies of the HAMP domain of EnvZ, an osmosensing transmembrane histidine kinase in Escherichia coli. J Biol Chem (2007) 1.02
Cysteine-scanning analysis of the dimerization domain of EnvZ, an osmosensing histidine kinase. J Bacteriol (2003) 1.01
Identification of the first functional toxin-antitoxin system in Streptomyces. PLoS One (2012) 1.00
Molecular biology, genetics and biochemistry of the repulsive guidance molecule family. Biochem J (2009) 1.00
Expanding the family of collagen proteins: recombinant bacterial collagens of varying composition form triple-helices of similar stability. Biomacromolecules (2010) 1.00
Inhibition of specific gene expressions by protein-mediated mRNA interference. Nat Commun (2012) 1.00
The mechanism of nucleic acid melting by a CspA family protein. J Mol Biol (2004) 1.00
An allosteric rheostat in HIV-1 gp120 reduces CCR5 stoichiometry required for membrane fusion and overcomes diverse entry limitations. J Mol Biol (2007) 0.99
RatA (YfjG), an Escherichia coli toxin, inhibits 70S ribosome association to block translation initiation. Mol Microbiol (2011) 0.99
Crystal structures of Phd-Doc, HigA, and YeeU establish multiple evolutionary links between microbial growth-regulating toxin-antitoxin systems. Structure (2010) 0.99
Defining requirements for collagenase cleavage in collagen type III using a bacterial collagen system. J Biol Chem (2012) 0.98
COMMD1 forms oligomeric complexes targeted to the endocytic membranes via specific interactions with phosphatidylinositol 4,5-bisphosphate. J Biol Chem (2008) 0.98
Growth and translation inhibition through sequence-specific RNA binding by Mycobacterium tuberculosis VapC toxin. J Biol Chem (2012) 0.97
Soluble repulsive guidance molecule c/hemojuvelin is a broad spectrum bone morphogenetic protein (BMP) antagonist and inhibits both BMP2- and BMP6-mediated signaling and gene expression. J Biol Chem (2010) 0.96
The HAMP linker in histidine kinase dimeric receptors is critical for symmetric transmembrane signal transduction. J Biol Chem (2004) 0.96
Enhancement of the solubility of proteins overexpressed in Escherichia coli by heat shock. J Mol Microbiol Biotechnol (2002) 0.96
Folding pathway mediated by an intramolecular chaperone: dissecting conformational changes coincident with autoprocessing and the role of Ca(2+) in subtilisin maturation. J Biochem (2002) 0.95
A role for SSRP1 in recombination-mediated DNA damage response. J Cell Biochem (2009) 0.95
RNase activity of polynucleotide phosphorylase is critical at low temperature in Escherichia coli and is complemented by RNase II. J Bacteriol (2008) 0.95
Formation of the stoichiometric complex of EnvZ, a histidine kinase, with its response regulator, OmpR. Mol Microbiol (2002) 0.95
An ab Initio structural model of a nucleoside permease predicts functionally important residues. J Biol Chem (2009) 0.95
Analysis of the role of the EnvZ linker region in signal transduction using a chimeric Tar/EnvZ receptor protein, Tez1. J Biol Chem (2003) 0.95
Acquisition of HIV-1 resistance in T lymphocytes using an ACA-specific E. coli mRNA interferase. Hum Gene Ther (2010) 0.95
Characterization of a mazEF toxin-antitoxin homologue from Staphylococcus equorum. J Bacteriol (2012) 0.95
A novel membrane-bound toxin for cell division, CptA (YgfX), inhibits polymerization of cytoskeleton proteins, FtsZ and MreB, in Escherichia coli. FEMS Microbiol Lett (2012) 0.93
DNA microarray analysis of the expression profile of Escherichia coli in response to treatment with 4,5-dihydroxy-2-cyclopenten-1-one. J Bacteriol (2002) 0.92
Functional and structural characterization of EnvZ, an osmosensing histidine kinase of E. coli. Methods Enzymol (2007) 0.92
Significant bias against the ACA triplet in the tmRNA sequence of Escherichia coli K-12. J Bacteriol (2009) 0.92
Noncollagenous region of the streptococcal collagen-like protein is a trimerization domain that supports refolding of adjacent homologous and heterologous collagenous domains. Protein Sci (2010) 0.92
Interactions between copper-binding sites determine the redox status and conformation of the regulatory N-terminal domain of ATP7B. J Biol Chem (2009) 0.92
Thermotoga maritima MazG protein has both nucleoside triphosphate pyrophosphohydrolase and pyrophosphatase activities. J Biol Chem (2003) 0.91