An overview of gibberellin metabolism enzyme genes and their related mutants in rice.

PubWeight™: 3.32‹?› | Rank: Top 1%

🔗 View Article (PMC 419838)

Published in Plant Physiol on April 09, 2004

Authors

Tomoaki Sakamoto1, Koutarou Miura, Hironori Itoh, Tomoko Tatsumi, Miyako Ueguchi-Tanaka, Kanako Ishiyama, Masatomo Kobayashi, Ganesh K Agrawal, Shin Takeda, Kiyomi Abe, Akio Miyao, Hirohiko Hirochika, Hidemi Kitano, Motoyuki Ashikari, Makoto Matsuoka

Author Affiliations

1: Field Production Science Center, University of Tokyo, Nishi-Tokyo, Tokyo 188-0002, Japan.

Articles citing this

(truncated to the top 100)

Ohno's dilemma: evolution of new genes under continuous selection. Proc Natl Acad Sci U S A (2007) 3.10

Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Plant Cell (2005) 2.56

Two rings in them all: the labdane-related diterpenoids. Nat Prod Rep (2010) 2.07

Identification of syn-pimara-7,15-diene synthase reveals functional clustering of terpene synthases involved in rice phytoalexin/allelochemical biosynthesis. Plant Physiol (2004) 2.06

Rice contains two disparate ent-copalyl diphosphate synthases with distinct metabolic functions. Plant Physiol (2004) 1.88

ELONGATED UPPERMOST INTERNODE encodes a cytochrome P450 monooxygenase that epoxidizes gibberellins in a novel deactivation reaction in rice. Plant Cell (2006) 1.83

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions. Nucleic Acids Res (2010) 1.79

Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice. Plant Cell Physiol (2008) 1.77

CYP76M7 is an ent-cassadiene C11alpha-hydroxylase defining a second multifunctional diterpenoid biosynthetic gene cluster in rice. Plant Cell (2009) 1.73

A novel pathway for sesquiterpene biosynthesis from Z,Z-farnesyl pyrophosphate in the wild tomato Solanum habrochaites. Plant Cell (2009) 1.68

Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB. Plant Cell (2009) 1.65

Auxin biosynthesis by the YUCCA genes in rice. Plant Physiol (2007) 1.62

A novel class of gibberellin 2-oxidases control semidwarfism, tillering, and root development in rice. Plant Cell (2008) 1.60

GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley. Funct Integr Genomics (2009) 1.60

A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis. Plant J (2010) 1.47

Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice. Plant Physiol (2006) 1.39

Synergistic substrate inhibition of ent-copalyl diphosphate synthase: a potential feed-forward inhibition mechanism limiting gibberellin metabolism. Plant Physiol (2007) 1.37

A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes. Plant Mol Biol (2006) 1.33

Gibberellin regulates pollen viability and pollen tube growth in rice. Plant Cell (2007) 1.31

To gibberellins and beyond! Surveying the evolution of (di)terpenoid metabolism. Annu Rev Plant Biol (2014) 1.28

The rice dwarf virus P2 protein interacts with ent-kaurene oxidases in vivo, leading to reduced biosynthesis of gibberellins and rice dwarf symptoms. Plant Physiol (2005) 1.28

Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2, and -3 are the dominant paralogs. Plant Cell (2012) 1.28

Characterization of CYP76M5-8 indicates metabolic plasticity within a plant biosynthetic gene cluster. J Biol Chem (2012) 1.26

Molecular cloning of GA 2-oxidase3 from spinach and its ectopic expression in Nicotiana sylvestris. Plant Physiol (2005) 1.23

The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism. Plant Physiol (2007) 1.22

Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice. Mol Genet Genomics (2008) 1.19

Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in rice. Plant Cell (2014) 1.17

Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant. Plant Cell (2008) 1.16

Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling. EMBO J (2010) 1.15

CYP701A8: a rice ent-kaurene oxidase paralog diverted to more specialized diterpenoid metabolism. Plant Physiol (2012) 1.14

Function and transcript analysis of gibberellin-biosynthetic enzymes in wheat. Planta (2005) 1.11

Rice GIBBERELLIN INSENSITIVE DWARF1 is a gibberellin receptor that illuminates and raises questions about GA signaling. Plant Cell (2006) 1.11

Gibberellin signaling: a theme and variations on DELLA repression. Plant Physiol (2012) 1.10

Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling. Plant Physiol (2005) 1.09

A copal-8-ol diphosphate synthase from the angiosperm Cistus creticus subsp. creticus is a putative key enzyme for the formation of pharmacologically active, oxygen-containing labdane-type diterpenes. Plant Physiol (2010) 1.08

OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J Biol Chem (2009) 1.08

Gene clusters for secondary metabolic pathways: an emerging theme in plant biology. Plant Physiol (2010) 1.07

Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene. Plant Physiol (2011) 1.06

The application of synthetic biology to elucidation of plant mono-, sesqui-, and diterpenoid metabolism. Mol Plant (2014) 1.03

RiceFREND: a platform for retrieving coexpressed gene networks in rice. Nucleic Acids Res (2012) 1.03

Gibberellin metabolism in Vitis vinifera L. during bloom and fruit-set: functional characterization and evolution of grapevine gibberellin oxidases. J Exp Bot (2013) 1.00

Gibberellin deficiency pleiotropically induces culm bending in sorghum: an insight into sorghum semi-dwarf breeding. Sci Rep (2014) 1.00

Gibberellin biosynthesis in developing pumpkin seedlings. Plant Physiol (2005) 1.00

The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS Genet (2010) 0.99

Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family. BMC Plant Biol (2015) 0.98

A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor, GID1, and DELLA proteins. Plant Cell (2010) 0.97

Functional characterization of wheat ent-kaurene(-like) synthases indicates continuing evolution of labdane-related diterpenoid metabolism in the cereals. Phytochemistry (2012) 0.97

A Gibberellin-Mediated DELLA-NAC Signaling Cascade Regulates Cellulose Synthesis in Rice. Plant Cell (2015) 0.97

Whole genome association mapping of plant height in winter wheat (Triticum aestivum L.). PLoS One (2014) 0.95

Gibberellins and heterosis of plant height in wheat (Triticum aestivum L.). BMC Genet (2007) 0.95

Evolutionary rate patterns of the Gibberellin pathway genes. BMC Evol Biol (2009) 0.95

Functional characterization of wheat copalyl diphosphate synthases sheds light on the early evolution of labdane-related diterpenoid metabolism in the cereals. Phytochemistry (2012) 0.94

Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway. Plant Cell Rep (2005) 0.93

Tomato SlDREB gene restricts leaf expansion and internode elongation by downregulating key genes for gibberellin biosynthesis. J Exp Bot (2012) 0.92

Genetic and physiological architecture of early vigor in Aegilops tauschii, the D-genome donor of hexaploid wheat. A quantitative trait loci analysis. Plant Physiol (2005) 0.90

A single residue switch for Mg(2+)-dependent inhibition characterizes plant class II diterpene cyclases from primary and secondary metabolism. J Biol Chem (2010) 0.90

Relationship between symptoms and gene expression induced by the infection of three strains of Rice dwarf virus. PLoS One (2011) 0.89

Gibberellin biosynthesis and signal transduction is essential for internode elongation in deepwater rice. Plant Cell Environ (2014) 0.87

SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice. Proc Jpn Acad Ser B Phys Biol Sci (2010) 0.87

Transcriptome analysis of Gerbera hybrida ray florets: putative genes associated with gibberellin metabolism and signal transduction. PLoS One (2013) 0.87

Characterization of the monoterpene synthase gene tps26, the ortholog of a gene induced by insect herbivory in maize. Plant Physiol (2008) 0.86

Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters. Nat Commun (2016) 0.86

OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress. PLoS One (2014) 0.86

Effects of the semi-dwarfing sdw1/denso gene in barley. J Appl Genet (2013) 0.86

The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance. Mol Genet Genomics (2007) 0.85

A Tandem Array of ent-Kaurene Synthases in Maize with Roles in Gibberellin and More Specialized Metabolism. Plant Physiol (2015) 0.85

Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice. Planta (2010) 0.85

Cryptochrome and phytochrome cooperatively but independently reduce active gibberellin content in rice seedlings under light irradiation. Plant Cell Physiol (2012) 0.85

OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa). J Exp Bot (2016) 0.84

A high-density genetic map for anchoring genome sequences and identifying QTLs associated with dwarf vine in pumpkin (Cucurbita maxima Duch.). BMC Genomics (2015) 0.83

Oryza sativa cytochrome P450 family member OsCYP96B4 reduces plant height in a transcript dosage dependent manner. PLoS One (2011) 0.83

Relationship between gene responses and symptoms induced by Rice grassy stunt virus. Front Microbiol (2013) 0.83

Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores. Elife (2015) 0.83

Heterosis in rice seedlings: its relationship to gibberellin content and expression of gibberellin metabolism and signaling genes. Plant Physiol (2011) 0.83

Isolation of prostrate turfgrass mutants via screening of dwarf phenotype and characterization of a perennial ryegrass prostrate mutant. Hortic Res (2016) 0.82

The SnRK2-APC/C(TE) regulatory module mediates the antagonistic action of gibberellic acid and abscisic acid pathways. Nat Commun (2015) 0.82

Towards Elucidating Carnosic Acid Biosynthesis in Lamiaceae: Functional Characterization of the Three First Steps of the Pathway in Salvia fruticosa and Rosmarinus officinalis. PLoS One (2015) 0.82

Transcriptome comparison reveals key candidate genes responsible for the unusual reblooming trait in tree peonies. PLoS One (2013) 0.82

Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths. Mol Genet Genomics (2008) 0.81

Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet (2014) 0.81

Haplotype Analysis and Linkage Disequilibrium at Five Loci in Eragrostis tef. G3 (Bethesda) (2012) 0.81

Map-Based Cloning of Seed Dormancy1-2 Identified a Gibberellin Synthesis Gene Regulating the Development of Endosperm-Imposed Dormancy in Rice. Plant Physiol (2015) 0.81

Functional characterization of ent-copalyl diphosphate synthase, kaurene synthase and kaurene oxidase in the Salvia miltiorrhiza gibberellin biosynthetic pathway. Sci Rep (2016) 0.80

The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice. J Integr Plant Biol (2016) 0.80

Gibberellin metabolism enzymes in rice. Plant Physiol (2006) 0.80

The multiple contributions of phytochromes to the control of internode elongation in rice. Plant Physiol (2011) 0.80

The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems. PLoS Genet (2016) 0.80

Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines. BMC Genomics (2016) 0.80

An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice. Plant Signal Behav (2013) 0.79

Microarray analyses and comparisons of upper or lower flanks of rice shoot base preceding gravitropic bending. PLoS One (2013) 0.79

Over-expression of the AtGA2ox8 gene decreases the biomass accumulation and lignification in rapeseed (Brassica napus L.). J Zhejiang Univ Sci B (2010) 0.79

A study of phytohormone biosynthetic gene expression using a circadian clock-related mutant in rice. Plant Signal Behav (2011) 0.79

Divergence and adaptive evolution of the gibberellin oxidase genes in plants. BMC Evol Biol (2015) 0.78

Single-feature polymorphism mapping of isogenic rice lines identifies the influence of terpene synthase on brown planthopper feeding preferences. Rice (N Y) (2013) 0.78

Genus Cistus: a model for exploring labdane-type diterpenes' biosynthesis and a natural source of high value products with biological, aromatic, and pharmacological properties. Front Chem (2014) 0.78

SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice. Planta (2012) 0.78

Identification of tillering node proteins differentially accumulated in barley recombinant inbred lines with different juvenile growth habits. Int J Mol Sci (2012) 0.78

Purification and kinetic studies of recombinant gibberellin dioxygenases. BMC Plant Biol (2005) 0.77

Genome-wide association for grain yield under rainfed conditions in historical wheat cultivars from Pakistan. Front Plant Sci (2015) 0.77

Isolation and expression profiles of gibberellin metabolism genes in developing male and female cones of Pinus tabuliformis. Funct Integr Genomics (2014) 0.77

Articles cited by this

MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics (1987) 54.39

A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (2002) 42.78

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science (2002) 21.26

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science (2003) 8.65

Green revolution: a mutant gibberellin-synthesis gene in rice. Nature (2002) 5.84

The genome sequence and structure of rice chromosome 1. Nature (2002) 4.99

GIBBERELLIN BIOSYNTHESIS: Enzymes, Genes and Their Regulation. Annu Rev Plant Physiol Plant Mol Biol (1997) 4.83

Gibberellin metabolism: new insights revealed by the genes. Trends Plant Sci (2000) 4.79

Sequence and analysis of rice chromosome 4. Nature (2002) 4.39

slender rice, a constitutive gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8. Plant Cell (2001) 4.22

Genomic analysis of the terpenoid synthase ( AtTPS) gene family of Arabidopsis thaliana. Mol Genet Genomics (2002) 2.64

Overexpression of a novel class of gibberellin 2-oxidases decreases gibberellin levels and creates dwarf plants. Plant Cell (2003) 2.16

Cloning and functional analysis of two gibberellin 3 beta -hydroxylase genes that are differently expressed during the growth of rice. Proc Natl Acad Sci U S A (2001) 2.09

A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase. Plant Mol Biol (2004) 2.00

Gibberellin 2-oxidation and the SLN gene of Pisum sativum. Plant J (1999) 1.96

Expression of a gibberellin 2-oxidase gene around the shoot apex is related to phase transition in rice. Plant Physiol (2001) 1.86

The SLENDER gene of pea encodes a gibberellin 2-oxidase. Plant Physiol (1999) 1.74

Gibberellin Biosynthesis in Plants and Fungi: A Case of Convergent Evolution? J Plant Growth Regul (2001) 1.67

Molecular cloning and characterization of a cDNA encoding ent-cassa-12,15-diene synthase, a putative diterpenoid phytoalexin biosynthetic enzyme, from suspension-cultured rice cells treated with a chitin elicitor. Plant J (2004) 1.42

Expression of novel rice gibberellin 2-oxidase gene is under homeostatic regulation by biologically active gibberellins. J Plant Res (2003) 1.15

Biosynthesis of rice phytoalexins: identification of putative diterpene hydrocarbon precursors. Arch Biochem Biophys (1992) 1.07

Biosynthesis of cyclic diterpene hydrocarbons in rice cell suspensions: conversion of 9,10-syn-labda-8(17),13-dienyl diphosphate to 9beta-pimara-7,15-diene and stemar-13-ene. Arch Biochem Biophys (1996) 1.04

Characterization of an inducible P450 hydroxylase involved in the rice diterpene phytoalexin biosynthetic pathway. Arch Biochem Biophys (1995) 0.98

Articles by these authors

GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin. Nature (2005) 5.60

Cytokinin oxidase regulates rice grain production. Science (2005) 5.60

Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant. Science (2003) 4.44

Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana. Plant J (2002) 4.04

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature (2009) 3.74

In planta functions of the Arabidopsis cytokinin receptor family. Proc Natl Acad Sci U S A (2004) 3.47

Rice plant development: from zygote to spikelet. Plant Cell Physiol (2005) 3.45

Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome. Plant Cell (2003) 3.45

The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei. Plant Cell (2002) 3.41

An active DNA transposon family in rice. Nature (2003) 3.24

OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat Genet (2010) 3.23

Retrotransposon-induced mutations in grape skin color. Science (2004) 3.16

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res (2007) 3.13

Loss of function of a proline-containing protein confers durable disease resistance in rice. Science (2009) 3.03

Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice. Nat Biotechnol (2005) 2.89

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc Natl Acad Sci U S A (2007) 2.82

Identification and characterization of Arabidopsis gibberellin receptors. Plant J (2006) 2.82

Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray. Plant Physiol (2004) 2.71

The OsTB1 gene negatively regulates lateral branching in rice. Plant J (2003) 2.69

Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy. Plant Cell Physiol (2009) 2.60

A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450. Plant Cell (2003) 2.58

Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Plant Cell (2005) 2.56

Structural basis for gibberellin recognition by its receptor GID1. Nature (2008) 2.54

Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice. Plant Cell Physiol (2005) 2.47

Epithelial-to-mesenchymal transition predicts prognosis of pancreatic cancer. Surgery (2013) 2.43

Mutations in mitochondrial carrier family gene SLC25A38 cause nonsyndromic autosomal recessive congenital sideroblastic anemia. Nat Genet (2009) 2.37

A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length. Plant Cell (2005) 2.30

Mutations in origin recognition complex gene ORC4 cause Meier-Gorlin syndrome. Nat Genet (2011) 2.18

Drosophila IKK-related kinase regulates nonapoptotic function of caspases via degradation of IAPs. Cell (2006) 2.15

Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin. Plant Cell (2007) 2.14

Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem. Plant J (2002) 2.14

Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice. Plant Cell (2005) 2.09

The YABBY gene DROOPING LEAF regulates carpel specification and midrib development in Oryza sativa. Plant Cell (2004) 2.08

Three SnRK2 protein kinases are the main positive regulators of abscisic acid signaling in response to water stress in Arabidopsis. Plant Cell Physiol (2009) 2.06

Mutations in centrosomal protein CEP152 in primary microcephaly families linked to MCPH4. Am J Hum Genet (2010) 2.05

Gibberellin receptor and its role in gibberellin signaling in plants. Annu Rev Plant Biol (2007) 2.05

A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase. Plant Mol Biol (2004) 2.00

Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa. Plant Cell Physiol (2009) 1.99

A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice. Plant Cell (2007) 1.97

Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J (2008) 1.91

Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant Physiol (2003) 1.90

Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants? Plant J (2003) 1.87

High temperature-induced abscisic acid biosynthesis and its role in the inhibition of gibberellin action in Arabidopsis seeds. Plant Physiol (2007) 1.83

Genetic manipulation of gibberellin metabolism in transgenic rice. Nat Biotechnol (2003) 1.83